View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7033_high_7 (Length: 400)

Name: NF7033_high_7
Description: NF7033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7033_high_7
NF7033_high_7
[»] chr4 (10 HSPs)
chr4 (34-390)||(37232557-37232913)
chr4 (47-390)||(37252799-37253162)
chr4 (165-332)||(37257059-37257238)
chr4 (170-250)||(37244881-37244961)
chr4 (168-243)||(37237606-37237681)
chr4 (327-371)||(37241994-37242038)
chr4 (249-304)||(37237699-37237754)
chr4 (324-371)||(37245014-37245061)
chr4 (47-100)||(37237486-37237539)
chr4 (47-94)||(37256943-37256990)
[»] chr6 (4 HSPs)
chr6 (149-290)||(14316667-14316817)
chr6 (164-250)||(14253954-14254040)
chr6 (149-243)||(14248129-14248223)
chr6 (250-381)||(14351659-14351790)
[»] scaffold1652 (1 HSPs)
scaffold1652 (149-238)||(595-684)
[»] scaffold0902 (2 HSPs)
scaffold0902 (149-241)||(3185-3277)
scaffold0902 (321-371)||(3360-3410)
[»] scaffold1176 (2 HSPs)
scaffold1176 (164-243)||(371-450)
scaffold1176 (250-302)||(123-175)
[»] scaffold1801 (2 HSPs)
scaffold1801 (172-242)||(268-338)
scaffold1801 (322-371)||(127-176)


Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 34 - 390
Target Start/End: Original strand, 37232557 - 37232913
Alignment:
Q  34 tgtataattaaattaatagaatgaatgaatcgtagtcacacggatcgaaacagggcaacaacaaaaaggaaaatagttctcacgatcagtgtaaattcgt 133  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37232557 tgtataattaaattaatagaatgaatgaatcgtagtcacacagatcgaaacagggcaacaacaaaaaggaaaatagttctcacgatctgtgtaaattcgt 37232656  T
Q  134 gataagaaaaagaacaaaataaactaagagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctatt 233  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37232657 gataagaaaaagaacataataaactaagagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctatt 37232756  T
Q  234 caaagcggcgccgtttgatggtgcttcagcaggaggagtggagatcgatgatggagtaagagcaggagcgacggcgggtgaaccagaggaagcaggagga 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  37232757 caaagcggcgccgtttgatggtgcttcagcaggaggagtggagatcgatgatggagtaacagcaggagcggcggcgggtgaaccagaggaagcaggagga 37232856  T
Q  334 ggagatggtggagagttgatggtggatggtgaaggagatggagaattcttcacaggt 390  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  37232857 ggagatggtggagagttgatggcggatggcgaaggagatggagaattcttcacaggt 37232913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 47 - 390
Target Start/End: Original strand, 37252799 - 37253162
Alignment:
Q  47 taatagaatgaatgaatcgtagtcacacggatcgaaacagggcaacaacaaaaaggaaaatagt---tctcacgatcagtgtaaattcgtgat----aag 139  Q
    |||| |||||||| |||||| ||| ||| ||||||||||| | ||||||||||||| | |||||   ||||||||||  ||||||||||||||    ||     
T  37252799 taatcgaatgaataaatcgtcgtcgcacagatcgaaacagagaaacaacaaaaaggtacatagtagttctcacgatccatgtaaattcgtgatgtaaaaa 37252898  T
Q  140 aaaaagaacaaaataaactaa----------gagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatc 229  Q
    ||| | || |||||||| |||          ||||||||||||| |  ||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||    
T  37252899 aaacaaaataaaataaaataaaataaaactcgagtaactctctatagtatcaaagcggcggcgaaaaccactacagcagcagatccggcaacggtaaatc 37252998  T
Q  230 tattcaaagcggcgccgttt---gatggtgcttcagcaggaggagtggagatcgatgatggagtaagagcaggagcgacggcgggtgaaccagaggaagc 326  Q
    | ||||||||||| ||||||   || ||| |||| | |||||||||||| || |||||||||||||||||||||| ||| ||||| ||  | || |||||    
T  37252999 tgttcaaagcggcaccgttttcggaaggtccttcggaaggaggagtggaaatggatgatggagtaagagcaggagagacagcgggagagtcggatgaagc 37253098  T
Q  327 aggaggaggagatggtggagagttgatggtggatggtgaaggagatggagaattcttcacaggt 390  Q
    |||||||||||||||||||||||||||||  || ||||||||||||||||  ||||||||||||    
T  37253099 aggaggaggagatggtggagagttgatggctgaaggtgaaggagatggagcgttcttcacaggt 37253162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 165 - 332
Target Start/End: Original strand, 37257059 - 37257238
Alignment:
Q  165 aactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcgcc---gtt---------tgat 252  Q
    ||||||||||||||||||||| || ||||||| || ||||||||||||||| |||||||||||||| || ||||||||| |   |||         |||     
T  37257059 aactctctacatcatcaaagcagcggcgaaaaccataacagcagcagatccagcaacggtgaatctgttaaaagcggcggcggagttgtctgaaggtgaa 37257158  T
Q  253 ggtgcttcagcaggaggagtggagatcgatgatggagtaagagcaggagcgacggcgggtgaaccagaggaagcaggagg 332  Q
    |||||||||| ||||| ||| ||||| ||||||||||||| ||||||||  || ||||| ||  ||||||||||||||||    
T  37257159 ggtgcttcagaaggagtagtagagatggatgatggagtaacagcaggagaaacagcgggagagtcagaggaagcaggagg 37257238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 37244881 - 37244961
Alignment:
Q  170 tctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcgccgtttg 250  Q
    |||| ||||||||| | |||||||||| |||||||||||||||||||||||| |||||||| || ||||||||||||||||    
T  37244881 tctatatcatcaaaacagcagcgaaaaccacaacagcagcagatccggcaacagtgaatctgttgaaagcggcgccgtttg 37244961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 37237606 - 37237681
Alignment:
Q  168 tctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcg 243  Q
    |||||||||||||||||| ||||| ||||  ||| ||||||||||| |||||| ||||||||| ||||| ||||||    
T  37237606 tctctacatcatcaaagctgcagcaaaaacaacagcagcagcagatacggcaaaggtgaatctgttcaatgcggcg 37237681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 37241994 - 37242038
Alignment:
Q  327 aggaggaggagatggtggagagttgatggtggatggtgaaggaga 371  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||    
T  37241994 aggaggaggagatggtggagagttgatggcggacggtgaaggaga 37242038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 304
Target Start/End: Original strand, 37237699 - 37237754
Alignment:
Q  249 tgatggtgcttcagcaggaggagtggagatcgatgatggagtaagagcaggagcga 304  Q
    ||| |||||||||| ||||||||| ||||| ||||||||||||| |||||||||||    
T  37237699 tgaaggtgcttcagaaggaggagtagagatggatgatggagtaacagcaggagcga 37237754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 371
Target Start/End: Original strand, 37245014 - 37245061
Alignment:
Q  324 agcaggaggaggagatggtggagagttgatggtggatggtgaaggaga 371  Q
    |||||||||||||||||||||||||||| ||||||| ||||| |||||    
T  37245014 agcaggaggaggagatggtggagagttgttggtggacggtgatggaga 37245061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 37237486 - 37237539
Alignment:
Q  47 taatagaatgaatgaatcgtagtcacacggatcgaaacagggcaacaacaaaaa 100  Q
    |||| |||||||||||| || |||||||||| |||||||| |||||||||||||    
T  37237486 taattgaatgaatgaattgtcgtcacacggaccgaaacagagcaacaacaaaaa 37237539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 37256943 - 37256990
Alignment:
Q  47 taatagaatgaatgaatcgtagtcacacggatcgaaacagggcaacaa 94  Q
    ||||| ||||||||||| |||||||||| ||||||||||| |||||||    
T  37256943 taataaaatgaatgaatggtagtcacacagatcgaaacagagcaacaa 37256990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 149 - 290
Target Start/End: Original strand, 14316667 - 14316817
Alignment:
Q  149 aaaataaactaagagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcgccgt- 247  Q
    |||| ||||||||  |||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||| ||| ||||| |||||||||||| |||     
T  14316667 aaaaaaaactaagcctaactctctacatcatcaaagcagcagcgaaaaccacgacagcagcagatccggcaagggtaaatctgttcaaagcggcgtcgtt 14316766  T
Q  248 --------ttgatggtgcttcagcaggaggagtggagatcgatgatggagt 290  Q
            |||||||||||| || |||||| || |||||||||||||||||    
T  14316767 cgtggacgttgatggtgctttagaaggaggggtagagatcgatgatggagt 14316817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 14253954 - 14254040
Alignment:
Q  164 taactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcgccgtttg 250  Q
    |||||||||||||||||||||| |||||||||| ||| |||||||||||||| ||||| || ||||| |||||||||||| ||||||    
T  14253954 taactctctacatcatcaaagcagcagcgaaaaccacgacagcagcagatccagcaactgtaaatctgttcaaagcggcgtcgtttg 14254040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 14248129 - 14248223
Alignment:
Q  149 aaaataaactaagagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcg 243  Q
    |||| ||||||||  |||||||||||||||||||||| ||| | |||| ||| ||||||| |||||||||||| || ||||| ||||||||||||    
T  14248129 aaaaaaaactaagcctaactctctacatcatcaaagcagcaacaaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcg 14248223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 381
Target Start/End: Original strand, 14351659 - 14351790
Alignment:
Q  250 gatggtgcttcagcaggaggagtggagatcgatgatggagtaagagcaggagcgacggcgggtgaaccagaggaagcaggaggaggagatggtggagagt 349  Q
    |||||||||| ||  || ||||| ||||  ||||||||||||| |||||||||||| ||||| |||||| |||||||| ||||||  ||||  |||||||    
T  14351659 gatggtgcttgagatggtggagtagagactgatgatggagtaacagcaggagcgacagcgggagaaccaaaggaagcatgaggagaggatgtcggagagt 14351758  T
Q  350 tgatggtggatggtgaaggagatggagaattc 381  Q
    | ||||   |  ||||||||||||||| ||||    
T  14351759 taatggcaaacagtgaaggagatggagcattc 14351790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 684 - 595
Alignment:
Q  149 aaaataaactaagagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaag 238  Q
    ||||||||||  | ||||||||||||||||||||||| |||| ||||| ||| |||||||||||||||||||| || ||||| |||||||    
T  684 aaaataaactctgcgtaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaag 595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 3185 - 3277
Alignment:
Q  149 aaaataaactaagagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcgg 241  Q
    |||||||||| ||  |||||||||||||||||||||| || | ||||| ||| |||||||||||||||||||| || ||||| ||||||||||    
T  3185 aaaataaactcagcctaactctctacatcatcaaagcagccgtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcgg 3277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 321 - 371
Target Start/End: Original strand, 3360 - 3410
Alignment:
Q  321 ggaagcaggaggaggagatggtggagagttgatggtggatggtgaaggaga 371  Q
    ||||||| |||||||||||||||||||||||||||  || |||||||||||    
T  3360 ggaagcatgaggaggagatggtggagagttgatggcagacggtgaaggaga 3410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 450 - 371
Alignment:
Q  164 taactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcg 243  Q
    |||||||||||||||||||||| |||  ||||| ||| ||||||| |||||||||||| || ||||| ||||||||||||    
T  450 taactctctacatcatcaaagcagcaatgaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcg 371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 302
Target Start/End: Complemental strand, 175 - 123
Alignment:
Q  250 gatggtgcttcagcaggaggagtggagatcgatgatggagtaagagcaggagc 302  Q
    |||||||||| ||  |||||||| ||||||||||||||||| | |||||||||    
T  175 gatggtgcttgagatggaggagtagagatcgatgatggagtcacagcaggagc 123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1801 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 338 - 268
Alignment:
Q  172 tacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggc 242  Q
    |||||||||||||| ||||  ||||  || |||||||||||||||||||| || ||||| |||||||||||    
T  338 tacatcatcaaagcagcagttaaaaggacgacagcagcagatccggcaactgtaaatctgttcaaagcggc 268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1801; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 176 - 127
Alignment:
Q  322 gaagcaggaggaggagatggtggagagttgatggtggatggtgaaggaga 371  Q
    |||||| ||||||||||| |||||||||||||||  || |||||||||||    
T  176 gaagcatgaggaggagattgtggagagttgatggcagacggtgaaggaga 127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University