View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7033_low_11 (Length: 372)
Name: NF7033_low_11
Description: NF7033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7033_low_11 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 157 - 372
Target Start/End: Complemental strand, 14380348 - 14380133
Alignment:
| Q |
157 |
tccatcgtgttttggaaattcatatattttaggatacatttgaattgcttacatagggcggaatgtagtaaaatgaaatggaataggttttttagatttg |
256 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14380348 |
tccatcgtgttttggaaattcatgtattttaggatacatttgaattgcttacatagggcggaatgtagtagaatgaaatggaataggttttttagatttg |
14380249 |
T |
|
| Q |
257 |
taaaagggatattatctcatttcatttcattggttcaatactataccatcaatttgaacatactctcgagtcttagctaatgggctgtgattttacacaa |
356 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14380248 |
taaaagggatattatctcatttcatttcactggttccacactataccatcaatttgaacatactctcgagtcttagctaatgggctgtgattttacacaa |
14380149 |
T |
|
| Q |
357 |
ttgttaacccttgctt |
372 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
14380148 |
ttgttaacccttgctt |
14380133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 14393350 - 14393194
Alignment:
| Q |
1 |
agactaagaaaatagttaaacatacagaattgtaattacaatgaattgtcgaaatataccttcagcttcacttccaaaatctgggggaacatgttttgcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14393350 |
agactaagaaaatagttaaacatacagaattgtaattacaatgaattgtcgaaatataccttcagcttcacttccaaaatctgggggaacatgttttgcc |
14393251 |
T |
|
| Q |
101 |
gatggtttcaagcttagcaaaaatcattcagaaaatggcaatgacattccatctcct |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14393250 |
gatggtttcaagcttagcaaaaatcattcagaaaatggcaatgacattccatctcct |
14393194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 227 - 372
Target Start/End: Original strand, 14245927 - 14246071
Alignment:
| Q |
227 |
aaatgaaatggaataggttttttagatttgtaaaagggatattatctcatttcatttcattggttcaatactataccatcaatttgaacatactctcgag |
326 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||| ||||||||||||| ||||||||| | || | |||||||||||| ||| |||||||||| ||| |
|
|
| T |
14245927 |
aaatgaaatggaatatgttttttagatttgaaaaatggatattatctcacttcatttcactaatttcacactataccatcagtttaaacatactcttgag |
14246026 |
T |
|
| Q |
327 |
tcttagctaatgggctgtgattttacacaattgttaacccttgctt |
372 |
Q |
| |
|
|||| | ||||||| ||||| |||||||||| ||| ||||||||| |
|
|
| T |
14246027 |
tctt-gataatgggttgtgagattacacaattattagcccttgctt |
14246071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14358306 - 14358346
Alignment:
| Q |
1 |
agactaagaaaatagttaaacatacagaattgtaattacaa |
41 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
14358306 |
agactaaagaaatatttaaacatacagaattgtaattacaa |
14358346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University