View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7033_low_12 (Length: 371)
Name: NF7033_low_12
Description: NF7033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7033_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 29 - 264
Target Start/End: Complemental strand, 17736315 - 17736084
Alignment:
| Q |
29 |
aacatgtagatttacttaccaagataaatgttacctggtgtaactctatctagagggggcgtgttgaatccacctaaattaaattcaatataaatcatgt |
128 |
Q |
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| T |
17736315 |
aacatgtagatttacttaccaagataaatgttacctggtgtaactctatctagagggggcgtgttgaatccacctaaattaaattcaatataaatcatgt |
17736216 |
T |
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| Q |
129 |
actataagtctatgatttatcttttcctaatcttatgcaaatcctttccttagcgtaggattcatgttttgtcatattctgcaacnnnnnnnnntcgtta |
228 |
Q |
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| T |
17736215 |
actatgagtctatgatttatcttttcctaatcttacgcaaatcctttccttagcgtaggattcatgttttgtcatattctgcaa----aaaaaatcgtta |
17736120 |
T |
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| Q |
229 |
taaagattacctccgggaagaagaagattattactt |
264 |
Q |
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| T |
17736119 |
taaagattacctccgggaagaagaagatttttactt |
17736084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 252 - 364
Target Start/End: Complemental strand, 17736073 - 17735961
Alignment:
| Q |
252 |
aagattattacttgatcacgtaagtaaataaatgtggacccaatagattaattattatatttggtatcaaaatacaaattggcacttgatatcaaattat |
351 |
Q |
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| T |
17736073 |
aagattattacttgatcacgtaagtaaataaatgtggacccaatagattaattattatatttggtatcaaaatacaaattgccacttgatatcaaatgat |
17735974 |
T |
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| Q |
352 |
tatgtctctgcta |
364 |
Q |
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| T |
17735973 |
tatgtctctgcta |
17735961 |
T |
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