View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7033_low_16 (Length: 309)
Name: NF7033_low_16
Description: NF7033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7033_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 1560591 - 1560802
Alignment:
| Q |
20 |
ttgagcacgaacaacatagttgttactctttcaagagtgtctatatataataagtggtttggaaaaggcataattaaaattggaggggttgcgaatgtac |
119 |
Q |
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| T |
1560591 |
ttgagcacgaacaacatagtcgttattctttcaagagtgtctatacataataagtggtttggaaaaggcataattaaaattggaggggctgcgaatgaac |
1560690 |
T |
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| Q |
120 |
gaaggtgaaggagtagtattgattgagaatttgaaattgcagcaatatggaactgaaacgaaactgaaaatcccactgcagtttgcatagttggagtatg |
219 |
Q |
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| T |
1560691 |
gaaggtggaggagaagcattgattgagaattttaaattgcatcaatatggaactgaaac------------cccacggtagtttgcatggttggagtatg |
1560778 |
T |
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| Q |
220 |
ggattcaatggtttgtttgaattt |
243 |
Q |
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| T |
1560779 |
ggattcaatggtttgtttgaattt |
1560802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 49364199 - 49364404
Alignment:
| Q |
20 |
ttgagcacgaacaacatagttgttactctttcaagagtgtctatatataataagtggtttggaaaaggcataattaaaattggaggggttgcgaatgtac |
119 |
Q |
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||||||||||||||||||| ||||||| || ||||||| | | ||||||||||||||||||||||||| ||||||||||||||||| || ||||| || |
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| T |
49364199 |
ttgagcacgaacaacatagctgttacttttcggagagtgtgtgtgtataataagtggtttggaaaaggcagaattaaaattggaggggatgggaatgaac |
49364298 |
T |
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| Q |
120 |
gaaggt------gaaggagtagtattgattgagaatttgaaattgcagcaatatggaactgaaac-gaaactgaaaatcccactgcagtttgcatagttg |
212 |
Q |
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| T |
49364299 |
aagggtggatgaggagaagaagcattgattgagcatttggaattgcaacaaactgaaactgaaactgaaactgaaaaccccactgcagcctgcatagttg |
49364398 |
T |
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| Q |
213 |
gagtat |
218 |
Q |
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|||||| |
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| T |
49364399 |
gagtat |
49364404 |
T |
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