View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7033_low_21 (Length: 250)
Name: NF7033_low_21
Description: NF7033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7033_low_21 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 37844865 - 37844628
Alignment:
| Q |
13 |
aatatagtgatcatttaggttctctgtagcctccaaaactaggtcctgaagggcattgattttattggcatttaagaagtatgatttgggttgataatac |
112 |
Q |
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| T |
37844865 |
aatatagtgatcatttaggttctctgtagcctccaaaactaggtcctgaagggcattgattttattggcatttaagaagtatgatttgggttgataatac |
37844766 |
T |
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| Q |
113 |
aaggattgttgaaggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaatca |
212 |
Q |
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| T |
37844765 |
aaggattgttgaaggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaatca |
37844666 |
T |
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| Q |
213 |
aacaaggccaaacataggttacttttggaacattcaga |
250 |
Q |
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| T |
37844665 |
aacaaggccaaacataggttacttttggaacattcaga |
37844628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 233
Target Start/End: Complemental strand, 35025610 - 35025487
Alignment:
| Q |
110 |
tacaaggattgttgaaggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaa |
209 |
Q |
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| T |
35025610 |
tacaaggatttctgcaggtacctatattgaccccaacgtgttaggaaaaaccagttgaaaggtttggtaagtattggaccagtgatagagggaaggaaga |
35025511 |
T |
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| Q |
210 |
tcaaacaaggccaaacataggtta |
233 |
Q |
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| T |
35025510 |
tcaaactaggccaagcataggtta |
35025487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 244
Target Start/End: Complemental strand, 37851957 - 37851838
Alignment:
| Q |
125 |
aggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaatcaaacaaggccaaa |
224 |
Q |
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| T |
37851957 |
aggtgcctatattgaccccaatgtgataggaaaaaccagttgaaaggtttggtaagtattggaccagtgatagagggacggaagatcaaactagaccaag |
37851858 |
T |
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| Q |
225 |
cataggttacttttggaaca |
244 |
Q |
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| T |
37851857 |
cataggttatttttggaaca |
37851838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 242
Target Start/End: Complemental strand, 37838645 - 37838511
Alignment:
| Q |
108 |
aatacaaggattgttgaaggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaa |
207 |
Q |
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| T |
37838645 |
aatacaaggatttctgcaggtgtctatattgaccccaacgtgataggaaaaaccaattgaaaggtttggtaagtattggaccggtgatagagggacggaa |
37838546 |
T |
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| Q |
208 |
aatcaaacaaggccaaacataggttacttttggaa |
242 |
Q |
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| T |
37838545 |
gatcaaaattggccaagcataggttatttttggaa |
37838511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 220
Target Start/End: Complemental strand, 37846364 - 37846220
Alignment:
| Q |
76 |
attggcatttaagaagtatgatttgggttgataatacaaggattgttgaaggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttg |
175 |
Q |
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| T |
37846364 |
attggcatgtataaagtatgatttaggttgataatacaaggatttcttttggtacatatattgaccccactgtgagaggaaaaaccaattgaaaagttgt |
37846265 |
T |
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| Q |
176 |
gtaactactggaccaacgccagagggaaggaaaatcaaacaaggc |
220 |
Q |
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| T |
37846264 |
gtaagtgttggcccagtgatagagggaaggtaaatcaaacaaggc |
37846220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 37837373 - 37837332
Alignment:
| Q |
13 |
aatatagtgatcatttaggttctctgtagcctccaaaactag |
54 |
Q |
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| T |
37837373 |
aatatactgatcatttaggttctctgtagcctccaaaactag |
37837332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 37833098 - 37833040
Alignment:
| Q |
132 |
tatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggacca |
190 |
Q |
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| T |
37833098 |
tatattgaccccaacgcgataggaaaaaccagttgaaaggtttggtaagtattggacca |
37833040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 244
Target Start/End: Complemental strand, 36867324 - 36867190
Alignment:
| Q |
110 |
tacaaggattgttgaaggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaa |
209 |
Q |
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| T |
36867324 |
tacaaggatttctgcaggtacctatattgaccccaacgtgataggaaaaaccagttgaaaggtttgataagtattaaactagtgatagagggaaggaaga |
36867225 |
T |
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| Q |
210 |
tcaaacaaggccaaacataggttacttttggaaca |
244 |
Q |
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| T |
36867224 |
tcaaactaggccaaacatagtttatttttggaaca |
36867190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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