View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7033_low_22 (Length: 250)

Name: NF7033_low_22
Description: NF7033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7033_low_22
NF7033_low_22
[»] chr6 (11 HSPs)
chr6 (1-239)||(5100496-5100734)
chr6 (1-239)||(5135597-5135835)
chr6 (1-130)||(5351846-5351973)
chr6 (1-122)||(5242129-5242249)
chr6 (5-117)||(5398520-5398627)
chr6 (155-230)||(5351780-5351855)
chr6 (53-117)||(5687599-5687661)
chr6 (56-130)||(5334567-5334640)
chr6 (8-57)||(2939370-2939419)
chr6 (8-56)||(5155707-5155755)
chr6 (25-55)||(5098691-5098721)
[»] chr3 (4 HSPs)
chr3 (26-117)||(47985060-47985151)
chr3 (26-117)||(47994347-47994438)
chr3 (26-117)||(48003634-48003725)
chr3 (26-117)||(48012919-48013010)
[»] scaffold1476 (1 HSPs)
scaffold1476 (193-238)||(183-228)


Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 5100496 - 5100734
Alignment:
Q  1 ttttgttaaaagacatttaaatggtatatgacatggaagaattgtaacagaacaaattagaatctttcagaactctttgtgaatacaaaaattcacccag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5100496 ttttgttaaaagacatttaaatggtatatgacatggaagaattgtaacagaacaaattagaatctttcagaactctttgtgaatacaaaaattcaccaag 5100595  T
Q  101 gataaaatctagaaactacagaccaaaaatcagacaatgacagagcgacctgtgagccataagtggaaaacaattgttagcagtcatcataaaattgatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||  | ||| ||||| || |||||||||||||||||||||||||||||||||||||    
T  5100596 gataaaatctagaaactacagaccaaaaatcagacaatgacaaagcagcttgtaagccaaaaatggaaaacaattgttagcagtcatcataaaattgatt 5100695  T
Q  201 tttgctcggccatcgctttactatctttcattgattcat 239  Q
    ||||||||||||| || ||||||||||||||||||||||    
T  5100696 tttgctcggccattgcattactatctttcattgattcat 5100734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 5135597 - 5135835
Alignment:
Q  1 ttttgttaaaagacatttaaatggtatatgacatggaagaattgtaacagaacaaattagaatctttcagaactctttgtgaatacaaaaattcacccag 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  5135597 ttttgttaaaagacatttaaatggtatataacatggaagaattgtaacagaacaaattagaatctttcagaactctttttgaatacaaaaattcaccaag 5135696  T
Q  101 gataaaatctagaaactacagaccaaaaatcagacaatgacagagcgacctgtgagccataagtggaaaacaattgttagcagtcatcataaaattgatt 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||  | ||| ||||| || |||||||||||||||||||||||||||||||||||||    
T  5135697 aataaaatctagaaactacagaccaaaaatcagacaatgacagagcagcttgtaagccaaaaatggaaaacaattgttagcagtcatcataaaattgatt 5135796  T
Q  201 tttgctcggccatcgctttactatctttcattgattcat 239  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  5135797 tttgctcggccattgctttactatcttccattgattcat 5135835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 5351973 - 5351846
Alignment:
Q  1 ttttgttaaaagacatttaaatggtatatgacatggaagaattgtaacagaacaaattagaatctttcagaactctttgtgaatacaaaaattcacccag 100  Q
    |||||||||||||| ||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||| ||||||||| |  |    
T  5351973 ttttgttaaaagacttttaaatagtacatgacatggaacaattgtaacagaacaaattagaatctttcaccactctttgtgaata-aaaaattcaacatg 5351875  T
Q  101 gataaaatctagaaactacagaccaaaaat 130  Q
    ||||||||| ||||||||||| ||||||||    
T  5351874 gataaaatcaagaaactacag-ccaaaaat 5351846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 5242129 - 5242249
Alignment:
Q  1 ttttgttaaaagacatttaaatggtatatgacatggaagaattgtaacagaacaaattagaatctttcagaactctttgtgaatacaaaaattcacccag 100  Q
    |||||||||||||||||||||||||| |||||||| ||||||| ||||| |||||||||||| ||||||  ||||| ||| |||| |||||||||||  |    
T  5242129 ttttgttaaaagacatttaaatggtacatgacatgaaagaattataacataacaaattagaaactttcaccactctctgtcaata-aaaaattcaccatg 5242227  T
Q  101 gataaaatctagaaactacaga 122  Q
    ||||||||||||||||||||||    
T  5242228 gataaaatctagaaactacaga 5242249  T

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Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 117
Target Start/End: Complemental strand, 5398627 - 5398520
Alignment:
Q  5 gttaaaagacatttaaatggtatatgacatggaagaattgtaacagaacaaattagaatctttcagaactctttgtgaatacaaaaattcacccaggata 104  Q
    |||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||  ||||    |||||| |||||||||||  |||||    
T  5398627 gttaaaagacttttaaatagtacatgacatggaagaattgtaacagaacaaattagaatctttcaccactc----tgaata-aaaaattcaccatggata 5398533  T
Q  105 aaatctagaaact 117  Q
    |||||||||||||    
T  5398532 aaatctagaaact 5398520  T

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Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 5351855 - 5351780
Alignment:
Q  155 agccataagtggaaaacaattgttagcagtcatcataaaattgatttttgctcggccatcgctttactatctttca 230  Q
    ||||| || |||||||||||||||||| |||| |||||||||||||||||||| ||||| ||||||||||||||||    
T  5351855 agccaaaaatggaaaacaattgttagccgtcaccataaaattgatttttgctccgccattgctttactatctttca 5351780  T

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Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 5687661 - 5687599
Alignment:
Q  53 caaattagaatctttcagaactctttgtgaatacaaaaattcacccaggataaaatctagaaact 117  Q
    ||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||    
T  5687661 caaattagaatctttcaaaactctttgtgaatacaaaaattcacc--ggataaaatctagaaact 5687599  T

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Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 5334640 - 5334567
Alignment:
Q  56 attagaatctttcagaactctttgtgaatacaaaaattcacccaggataaaatctagaaactacagaccaaaaat 130  Q
    ||||||||||||||  ||||||||||||||||||||||||||  |||||||||||||||||| ||| ||||||||    
T  5334640 attagaatctttcaccactctttgtgaatacaaaaattcaccatggataaaatctagaaacttcag-ccaaaaat 5334567  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 2939419 - 2939370
Alignment:
Q  8 aaaagacatttaaatggtatatgacatggaagaattgtaacagaacaaat 57  Q
    |||||| |||||||||||| |||||||||| |||| ||||||||||||||    
T  2939419 aaaagatatttaaatggtacatgacatggatgaatcgtaacagaacaaat 2939370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 5155707 - 5155755
Alignment:
Q  8 aaaagacatttaaatggtatatgacatggaagaattgtaacagaacaaa 56  Q
    |||||| ||||||||||||  ||||||||| ||||||||||||||||||    
T  5155707 aaaagatatttaaatggtacgtgacatggacgaattgtaacagaacaaa 5155755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 5098721 - 5098691
Alignment:
Q  25 tatatgacatggaagaattgtaacagaacaa 55  Q
    |||||||||||||||||||||||||||||||    
T  5098721 tatatgacatggaagaattgtaacagaacaa 5098691  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 117
Target Start/End: Original strand, 47985060 - 47985151
Alignment:
Q  26 atatgacatggaagaattgtaacagaacaaattagaatctttcagaactctttgtgaatacaaaaattcacccaggataaaatctagaaact 117  Q
    ||||||| |||||||||||||||| ||||||||  |||||||||    |||||  || |||||||||| |||  | ||||||||||||||||    
T  47985060 atatgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatttaccatgaataaaatctagaaact 47985151  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 117
Target Start/End: Original strand, 47994347 - 47994438
Alignment:
Q  26 atatgacatggaagaattgtaacagaacaaattagaatctttcagaactctttgtgaatacaaaaattcacccaggataaaatctagaaact 117  Q
    ||||||| |||||||||||||||| ||||||||  |||||||||    |||||  || |||||||||| |||  | ||||||||||||||||    
T  47994347 atatgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatttaccatgaataaaatctagaaact 47994438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 117
Target Start/End: Original strand, 48003634 - 48003725
Alignment:
Q  26 atatgacatggaagaattgtaacagaacaaattagaatctttcagaactctttgtgaatacaaaaattcacccaggataaaatctagaaact 117  Q
    ||||||| |||||||||||||||| ||||||||  |||||||||    |||||  || |||||||||| |||  | ||||||||||||||||    
T  48003634 atatgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatttaccatgaataaaatctagaaact 48003725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 117
Target Start/End: Original strand, 48012919 - 48013010
Alignment:
Q  26 atatgacatggaagaattgtaacagaacaaattagaatctttcagaactctttgtgaatacaaaaattcacccaggataaaatctagaaact 117  Q
    ||||||| |||||||||||||||| ||||||||  |||||||||    |||||  || |||||||||| |||  | ||||||||||||||||    
T  48012919 atatgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatttaccatgaataaaatctagaaact 48013010  T

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Target: scaffold1476 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 228 - 183
Alignment:
Q  193 aattgatttttgctcggccatcgctttactatctttcattgattca 238  Q
    ||||||||||||||| ||||| | ||||| ||||||||||||||||    
T  228 aattgatttttgctccgccattgttttaccatctttcattgattca 183  T

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