View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7033_low_23 (Length: 249)
Name: NF7033_low_23
Description: NF7033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7033_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 51181711 - 51181952
Alignment:
| Q |
1 |
atcatccgaaaagcctaatcccaaccaaaagaaacctatcatggcttctgctgcaattgcatctgcagcagctctagtagcctctcactgcattgagatt |
100 |
Q |
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| T |
51181711 |
atcatccgaaaagcctaatcccaaccaaaagaaccctaccatggcttctgctgcaattgcatctgcagcagctctagtagcctctcactgcattgagatt |
51181810 |
T |
|
| Q |
101 |
gcagaagatatgggagctgaacaggaccaaatcataactgcagttgactctgctattaatgcaaaaaccaatggagatattatgactctaacagccggag |
200 |
Q |
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| T |
51181811 |
gcagaagatatgggagctgaacaggaccaaatcataactgcagttgactctgctattaatgcaaaaaccaatggagatattatgactctaacagccggag |
51181910 |
T |
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| Q |
201 |
cagccacaggtatcagaatctaaagtcgatttattcatctca |
242 |
Q |
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| T |
51181911 |
cagccacaggtatcggaatctaaagtcgatttattcatctca |
51181952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 14180956 - 14180717
Alignment:
| Q |
1 |
atcatccgaaaagcctaatcccaaccaaaagaaacctatcatggcttctgctgcaattgcatctgcagcagctctagtagcctctcactgcattgagatt |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
14180956 |
atcatccgaaaagcctaatcccaaccaaaagaaccctaccatggcttctgctgcaattgcatctgccacagctctagtagcctctcattgcattgagatt |
14180857 |
T |
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| Q |
101 |
gcagaagatatgggagctgaacaggaccaaatcataactgcagttgactctgctattaatgcaaaaaccaatggagatattatgactctaacagccggag |
200 |
Q |
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| T |
14180856 |
gcagaagatatgggagctgaacaggaccaaatcataacagcagttgactctgctattaatgcaaaaaccaatggagatattatgactctaacagccggag |
14180757 |
T |
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| Q |
201 |
cagccacaggtatcagaatctaaagtcgatttattcatct |
240 |
Q |
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| T |
14180756 |
cagccacaggtatcagaatttaaagttgatttattcatct |
14180717 |
T |
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