View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7033_low_28 (Length: 243)
Name: NF7033_low_28
Description: NF7033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7033_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 37844620 - 37844396
Alignment:
| Q |
1 |
ccttcacaagcttttcagctattatcttaccatttcccatcagtttaactaaaagtccatcaatacaaattgttggtttgagattccaatcatcttcaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37844620 |
ccttcacaagcttttcagctattatcttaccatttcccatcagtttaactaaaagcccatcaatacaaattgttggtttgagattccaatcatcttcaac |
37844521 |
T |
|
| Q |
101 |
accgaatccagatagaaattgatcaacgtcatgccaaaagctagagtcactataataatccataggttcatgttcagtgtcctgccaaaagccaaagtca |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37844520 |
accgaatccagatagaaattgatcaatgtcatgccaaaagctagagtcactataataatccataggttcatgttcagtgtcctgccaaaagccaaagtca |
37844421 |
T |
|
| Q |
201 |
ctataataatccataggatccgtct |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
37844420 |
ctataataatccataggatccgtct |
37844396 |
T |
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