View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7033_low_29 (Length: 242)
Name: NF7033_low_29
Description: NF7033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7033_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 51181567 - 51181342
Alignment:
| Q |
1 |
tatcaagctcctgtaaagctgatgagcgaaaatttgcacaaaatattaatgaaaatagttacagattgagcagttatctgattataattgatgaatataa |
100 |
Q |
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| T |
51181567 |
tatcaagctcctgtaaagctgatgagcgaaaatttgcacaaaatattaatgaaaatagttacagattgagcagttatctgattataattgatgaatataa |
51181468 |
T |
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| Q |
101 |
tcacaagttgaatggaagataccccatttctcagcaagttttgattggaaaggaattctggagaaagtgcttggtgaagtaaaaataattcctgcatatg |
200 |
Q |
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| T |
51181467 |
tcacaagttgaatggaagataccccatttctcagcaagttttgattggaaaggaattctggagaaagtgcttggtgaagtaaaaataattcctgcatatg |
51181368 |
T |
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| Q |
201 |
aacgattactatgttatttcatttat |
226 |
Q |
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| T |
51181367 |
aacgattactatgttatttcatttat |
51181342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 14181104 - 14181323
Alignment:
| Q |
5 |
aagctcctgtaaagctgatgagcgaaaatttgcacaaaatattaatgaaaatagttacagattgagcagttatctgattataattgatgaatataatcac |
104 |
Q |
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| T |
14181104 |
aagctcctgtaaagctgatgagcaaaaatttgcacaaaaaattaacgaaaatagttacagattgagcatttatctgattataattgatgaatataatcac |
14181203 |
T |
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| Q |
105 |
aagttgaatggaagataccccatttctcagcaagttttgattggaaaggaattctggagaaagtgcttggtgaagtaaaaataattcctgcatatgaacg |
204 |
Q |
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| T |
14181204 |
atgttgaatgcaagataccccatttctcagcaagttttggctggaaaggaattctggagaaagtgcttggtgaagtaaaaataaatcctgcatatgaatg |
14181303 |
T |
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| Q |
205 |
attactatgttatttcatttat |
226 |
Q |
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| T |
14181304 |
attac--tgttatttcatttat |
14181323 |
T |
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