View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7033_low_3 (Length: 533)
Name: NF7033_low_3
Description: NF7033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7033_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 7 - 517
Target Start/End: Complemental strand, 36472026 - 36471525
Alignment:
| Q |
7 |
gcaatgacattttctgcatctatgtctgtggtagaatattaccttctgaaacgctttccaattccatatggtaagtgcatggataatttt-aatatttga |
105 |
Q |
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| T |
36472026 |
gcaatgacattttctgcatctatgtctgtggtggaatattaccttctgaaacgttttccaattccatatggtaagtgcatggataaatttgaattttt-- |
36471929 |
T |
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| Q |
106 |
annnnnnnnnnnctctaaaacatttaatattcaacgtttgattattcttgcagctctttactttgtagttgtagccactgttgctgcacttgttgggcaa |
205 |
Q |
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| T |
36471928 |
--------ttttctctaaaacatttaatattcaacgtttgattattcttgcagctctttactttgtagttgtagccactgttgctgcacttgttgggcaa |
36471837 |
T |
|
| Q |
206 |
catttggtgagaaagcttattgccttattaggaagagcatcaattatcattttcatcctagccctcacagtttttgtgagtggtatatcactaggcaagt |
305 |
Q |
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| T |
36471836 |
catttggtgagaaagcttattgccttattaggaagagcatcaattatcattttcatcctagccctcacagtttttgtgagtggtatatcactaggcaagt |
36471737 |
T |
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| Q |
306 |
atcgttaagttatgcgttttgcattcatatatagattaagatgagatgacttaacttcnnnnnnncccttcaaattacaggtggaacaggcatagcaaat |
405 |
Q |
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| T |
36471736 |
atcgttaagttgtgtgttttgcatttatatatagattaagatgagatgacttaacttctttttttcccttcaaattacaggtggaacaggcatagcaaat |
36471637 |
T |
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| Q |
406 |
ctaattaaaaggcttgaaaacaaagagtacatgggatttggtaacttatgttcgtacgcggttaggaattaaagttcaatatgtgtaaaacttgaggaca |
505 |
Q |
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| T |
36471636 |
ctaattaaaaggcttgaaaacaaagagtacatgggatttggtaacttatgttcgtacgcggttaggaattaaagttcaatatgtgtaaaacttgaggaca |
36471537 |
T |
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| Q |
506 |
aagatttttact |
517 |
Q |
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| T |
36471536 |
aagatttttact |
36471525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 127 - 313
Target Start/End: Complemental strand, 36462688 - 36462502
Alignment:
| Q |
127 |
atttaatattcaacgtttgattattcttgcagctctttactttgtagttgtagccactgttgctgcacttgttgggcaacatttggtgagaaagcttatt |
226 |
Q |
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| T |
36462688 |
atttaatattcaacgtttgattattcttgcagctctttactttgtagttgtagccactgttgctgcacttgttgggcaacatttggtgagaaagcttatt |
36462589 |
T |
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| Q |
227 |
gccttattaggaagagcatcaattatcattttcatcctagccctcacagtttttgtgagtggtatatcactaggcaagtatcgttaa |
313 |
Q |
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| T |
36462588 |
gtcttattagggagagcatcaattatcattttcatcttagccctcacagtttttgtgagtggaatatcactaggtaagtgtcgttaa |
36462502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 36462896 - 36462797
Alignment:
| Q |
7 |
gcaatgacattttctgcatctatgtctgtggtagaatattaccttctgaaacgctttccaattccatatggtaagtgcatggataattttaatatttgaa |
106 |
Q |
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| T |
36462896 |
gcaatgacattttctgcatctatgtctgtggtggaatattaccttctgaaacgttttcccattccatatggtaagtgtatggataaatttaatatttgaa |
36462797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 372 - 487
Target Start/End: Complemental strand, 36461974 - 36461859
Alignment:
| Q |
372 |
ccttcaaattacaggtggaacaggcatagcaaatctaattaaaaggcttgaaaacaaagagtacatgggatttggtaacttatgttcgtacgcggttagg |
471 |
Q |
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| T |
36461974 |
ccttcaaattacaggtggaacaggcatagcaagtctgattaaaaggactgaaaacaaggagtacatgggatttggaagcctatgtgcgtaccgtgtcagg |
36461875 |
T |
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| Q |
472 |
aattaaagttcaatat |
487 |
Q |
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| T |
36461874 |
aattaaagttaaatat |
36461859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 267
Target Start/End: Original strand, 34070747 - 34070801
Alignment:
| Q |
213 |
tgagaaagcttattgccttattaggaagagcatcaattatcattttcatcctagc |
267 |
Q |
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| T |
34070747 |
tgagaaaacttattgccttatcaggtaaagcttcgattatcattttcatcctagc |
34070801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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