View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7033_low_33 (Length: 222)
Name: NF7033_low_33
Description: NF7033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7033_low_33 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 34697393 - 34697172
Alignment:
| Q |
1 |
agtatggtggacgtgttgagcttgctaaagcctattacaaagcactaacctcatcagtgaagaaacatttcaaaggcaatggagttattgccagcatgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34697393 |
agtatggtggacgtgttgagcttgctaaagcctattacaaagcactgacctcatcagtgaagaaacatttcaatggcaatggagttattgccagcatgga |
34697294 |
T |
|
| Q |
101 |
gcattgcaacgacttctttctccttggcacagaagccatttcccttggacgtgtaggagacgatttctggtgttctgatccatctggtgatccaaatggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34697293 |
gcattgcaacgacttctttctccttggcacagaagccatttcccttggacgtgtaggagatgatttctggtgttctgatccatctggtgatccaaatggt |
34697194 |
T |
|
| Q |
201 |
acatattggctccaaggttgtc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
34697193 |
acatattggctccaaggttgtc |
34697172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 3 - 151
Target Start/End: Complemental strand, 43638369 - 43638221
Alignment:
| Q |
3 |
tatggtggacgtgttgagcttgctaaagcctattacaaagcactaacctcatcagtgaagaaacatttcaaaggcaatggagttattgccagcatggagc |
102 |
Q |
| |
|
|||||||| || ||||||||||| ||||| || ||||| |||||||| || |||| ||||||||||||||||||||| || ||| |||| ||| | | |
|
|
| T |
43638369 |
tatggtggtcgagttgagcttgcaaaagcgtactacaaggcactaactgattccgtgaggaaacatttcaaaggcaatggtgtcatttccagtatgcaac |
43638270 |
T |
|
| Q |
103 |
attgcaacgacttctttctccttggcacagaagccatttcccttggacg |
151 |
Q |
| |
|
| |||||||| ||| | ||||||| |||||| ||||||| |||||||| |
|
|
| T |
43638269 |
aatgcaacgatttcatgttccttggtacagaaaccatttcacttggacg |
43638221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 488848 - 488908
Alignment:
| Q |
162 |
gatttctggtgttctgatccatctggtgatccaaatggtacatattggctccaaggttgtc |
222 |
Q |
| |
|
||||||||||| |||| |||| ||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
488848 |
gatttctggtgcactgacccatatggtgatccaaatggtacatattggctacaaggatgtc |
488908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 488376 - 488529
Alignment:
| Q |
1 |
agtatggtggacgtgttgagcttgctaaagcctattacaaagcactaacctcatcagtgaagaaacatttcaaaggcaatggagttattgccagcatgga |
100 |
Q |
| |
|
||||||||||| | ||||| | || ||||| ||||||||||| || | | |||||||| ||||||||||| || ||||| || ||||| |||||||| |
|
|
| T |
488376 |
agtatggtggaagagttgatttggccaaagcatattacaaagctctctcaacttcagtgaaaaaacatttcaatggtaatggtgtcattgctagcatgga |
488475 |
T |
|
| Q |
101 |
gcattgcaacgacttctttctccttggcacagaagccatttcccttggacgtgt |
154 |
Q |
| |
|
|||||||| || ||| | | ||||| || |||||||| |||||||| ||||| |
|
|
| T |
488476 |
acattgcaatgatttcatgttgcttggaactgaagccatatcccttggtcgtgt |
488529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University