View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7033_low_5 (Length: 477)
Name: NF7033_low_5
Description: NF7033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7033_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 17 - 467
Target Start/End: Original strand, 39535649 - 39536094
Alignment:
| Q |
17 |
atgtagcgcataccagcagacacagaatggtggtactggtagtaggattggaactatttacattttctttttaggctatggataattatgaattaatgat |
116 |
Q |
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| T |
39535649 |
atgtagcgcataccagcagacacagaatggtggtactggtagtaggattggaactatttacattttctttttaggctatggataattatgaattaatgat |
39535748 |
T |
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| Q |
117 |
gatgatatagttggagttttatttgattctcattttggttgcacgtgcaaacacatgatgtattgagttagatagatattatttatccaactttgagnnn |
216 |
Q |
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| T |
39535749 |
gatgatatagttggagttttattttattctcattttggtttcacgtgcaaacacatgatgtattgagttagata----ttatttatccaactttgagttt |
39535844 |
T |
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| Q |
217 |
nnnnccccatttatttgccgcattattttgttcaacgaatagaatgttattactgggactgaattatgtcattgtttcaaattattatgtgttggtggcc |
316 |
Q |
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| T |
39535845 |
ttttccct-tttatttgccgcattattttgttcaacccatagaatgttattactgggactgaattatgtcattgtttcaaattattatgtgttggtggcc |
39535943 |
T |
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| Q |
317 |
gtggttggtgtcagtatttgtgtccatgcttcacaggttatagatgaatgcatggaggagacatataccttagatgatgacgaaactgcatatagtttta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39535944 |
gtggttggtgtcagtatttgtgtccatgcttcacaggttatagatgaatgcatggaggagacatataccttagatgatgacgaaactgcatatagtttta |
39536043 |
T |
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| Q |
417 |
taggtttgtttatagtttcactaaattattattatgcaagtgatgtccatc |
467 |
Q |
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| T |
39536044 |
taggtttgtttatagtttcactaaattattattatgcaagtcatgttcatc |
39536094 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 24894520 - 24894488
Alignment:
| Q |
276 |
tgaattatgtcattgtttcaaattattatgtgt |
308 |
Q |
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| T |
24894520 |
tgaattatgtcattttttcaaattattatgtgt |
24894488 |
T |
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