View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7033_low_7 (Length: 425)
Name: NF7033_low_7
Description: NF7033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7033_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 5 - 407
Target Start/End: Complemental strand, 38817828 - 38817428
Alignment:
| Q |
5 |
attcttgtaatagtaatcactgttcctaccaaacggtgtgagataaataaaaagtgaaaattgtgcacatgtcaatatctttatttattattcaatttta |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38817828 |
attcttgtaatagtaatcactgttcctaccaaacggtgtgagataaataaaaagtgaaaattgtgcacatgtcaatatctttatttattattcaatttta |
38817729 |
T |
|
| Q |
105 |
tcactctagagtgaaagttaattatattatccttacctttgtggtagtagcaaattaccattcccaagagaacggtagaaatcaaagtagtaactagaac |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38817728 |
tcactctagagtgaaagttaattatattatccttacctttgtggtagtagcaaattaccattcccaagagaacggtagaagtcaaagtagtaactagaac |
38817629 |
T |
|
| Q |
205 |
aattatcagccactttctgttatgatgatcttcatttacttcataagctgaagaaagtgatacaaatgttaatctagatttaaaacaacaaaatattaat |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
38817628 |
aattatcagccactttctgttatgatgatcttcatttacttcataagctgaagaaagtgatacaaatgttaatctagatttaaaacaac---atataaat |
38817532 |
T |
|
| Q |
305 |
atgttgatgtgtccacctaaaccaactattctttatttataggtcaagaacat-gtatttaatttaaattactcaaattaatatctgaaatttgactggg |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38817531 |
atgttgatgtgtccacctaaaccaactattctttatttataggtcaagaacatggtatttaatttaaattactcaaattaatatctgaaatttgactggg |
38817432 |
T |
|
| Q |
404 |
gaac |
407 |
Q |
| |
|
|||| |
|
|
| T |
38817431 |
gaac |
38817428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 405
Target Start/End: Complemental strand, 48884385 - 48883985
Alignment:
| Q |
5 |
attcttgtaatagtaatcactgttcctaccaaacggtgtgagataaataaaaagtgaaaattgtgcacatgtcaatatctttatttattattcaatttta |
104 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48884385 |
attcttgtaatagttatcactgttcttgccaaacggtgtcagataaataaaaagtgaaaattgtgcacatgtcaatatctttatttattattcaatttta |
48884286 |
T |
|
| Q |
105 |
tcactctagagtgaaagttaattatattatccttacctttgtggtagtagc---aaattaccattcccaagagaacggtagaaatcaaagtagtaactag |
201 |
Q |
| |
|
|| |||||| ||||||||||||||||| || ||||||||||||||||||| ||| ||||||||||||||||||||||| | ||||| |||||| || |
|
|
| T |
48884285 |
tcgctctagggtgaaagttaattatatcctcattacctttgtggtagtagcaaaaaaataccattcccaagagaacggtagcagtcaaaacagtaaccag |
48884186 |
T |
|
| Q |
202 |
aacaattatcagccactttctgttatgatgatcttcatttacttcataagctgaagaaagtgatacaaatgttaatctagatttaaaacaacaaaatatt |
301 |
Q |
| |
|
||||| ||||||| || |||||||||||| ||||||||||||||||| ||||||||||| |||||||||| |||||| ||| ||| ||||| ||||| |
|
|
| T |
48884185 |
aacaactatcagcaaccttctgttatgataatcttcatttacttcatgagctgaagaaaatgatacaaatattaatcaagaatta----aacaatatatt |
48884090 |
T |
|
| Q |
302 |
aatatgttgatgtgtccacctaaaccaactattctttatttataggtcaagaacatg-tatttaatttaaattactcaaattaatatctgaaatttgact |
400 |
Q |
| |
|
|||| |||||||||||||| | |||| |||||||||| | ||||||||||||||| ||||||| ||||| |||||||||||| |||| |||||||||| |
|
|
| T |
48884089 |
gatataatgatgtgtccacctcagccaattattctttatatctaggtcaagaacatgatatttaacttaaaatactcaaattaacatctaaaatttgact |
48883990 |
T |
|
| Q |
401 |
gggga |
405 |
Q |
| |
|
|||| |
|
|
| T |
48883989 |
aggga |
48883985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 5 - 405
Target Start/End: Original strand, 48477778 - 48478178
Alignment:
| Q |
5 |
attcttgtaatagtaatcactgttcctaccaaacggtgtgagataaataaaaagtgaaaattgtgcacatgtcaatatctttatttattattcaatttta |
104 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48477778 |
attcttgtaatagttatcactgttcctgccaaacggtgtcagataaataaaaagtgaaaattgtgcacatgtcaatatctttatttattattcaatttta |
48477877 |
T |
|
| Q |
105 |
tcactctagagtgaaagttaattatattatccttacctttgtggtagtagc---aaattaccattcccaagagaacggtagaaatcaaagtagtaactag |
201 |
Q |
| |
|
|| |||||| ||||||||||||||||| || ||||||||||||||||||| ||| ||||||| ||||||||| ||||| | |||||| |||||| || |
|
|
| T |
48477878 |
tcgctctagggtgaaagttaattatatcctcattacctttgtggtagtagcaaaaaaataccattgccaagagaaaggtagcagtcaaagcagtaaccag |
48477977 |
T |
|
| Q |
202 |
aacaattatcagccactttctgttatgatgatcttcatttacttcataagctgaagaaagtgatacaaatgttaatctagatttaaaacaacaaaatatt |
301 |
Q |
| |
|
||||| ||||||| || |||||||||||||||||| ||||||||||| ||||||||||| |||||||||| |||||| ||| ||| ||||| ||||| |
|
|
| T |
48477978 |
aacaactatcagcaaccttctgttatgatgatctttatttacttcatgagctgaagaaaatgatacaaatattaatcaagaatta----aacaatatatt |
48478073 |
T |
|
| Q |
302 |
aatatgttgatgtgtccacctaaaccaactattctttatttataggtcaagaacatg-tatttaatttaaattactcaaattaatatctgaaatttgact |
400 |
Q |
| |
|
|||| |||||||||||||| | |||| |||||||||| | |||||||| |||||| ||||||| ||||| |||||||||||| |||| || ||||||| |
|
|
| T |
48478074 |
gatataatgatgtgtccacctcagccaattattctttatatctaggtcaacaacatgatatttaacttaaaatactcaaattaacatctaaagtttgact |
48478173 |
T |
|
| Q |
401 |
gggga |
405 |
Q |
| |
|
|||| |
|
|
| T |
48478174 |
aggga |
48478178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 5 - 349
Target Start/End: Original strand, 48469454 - 48469803
Alignment:
| Q |
5 |
attcttgtaatagtaatcactgttcctaccaaacggtgtgagataaataaaaagtgaaaattgtgcacatgtcaatatctttatttattattcaatttta |
104 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
48469454 |
attcttgtaatagtaatcactgttcctgccaaacggtgtgagataaataaaaagtgaaaattgtgaacatgtcaatatctttatttattattcaatttta |
48469553 |
T |
|
| Q |
105 |
tcactctagagtgaaagttaattatattatccttacctttgtggtagtagc---aaattaccattcccaagagaacggtagaaatcaaagtagtaactag |
201 |
Q |
| |
|
|| |||||| ||||||||||||||||| || ||||||||||||||||||| ||| ||||||| ||||||||| ||||| | |||||| |||||| || |
|
|
| T |
48469554 |
tcgctctagggtgaaagttaattatatcctcattacctttgtggtagtagcaaaaaaataccattgccaagagaaaggtagcagtcaaagcagtaaccag |
48469653 |
T |
|
| Q |
202 |
aacaattatcagccac------tttctgttatgatgatcttcatttacttcataagctgaagaaagtgatacaaatgttaatctagatttaaaacaacaa |
295 |
Q |
| |
|
||||| ||||||| || ||||||||||||||||||||||||||||||| ||||||||||| |||||| ||| |||||||||| ||| ||||| |
|
|
| T |
48469654 |
aacaactatcagcaaccttctgtttctgttatgatgatcttcatttacttcatgagctgaagaaaatgataccaatattaatctagagtta----aacaa |
48469749 |
T |
|
| Q |
296 |
aatattaatatgttgatgtgtccacctaaaccaactattctttatttataggtc |
349 |
Q |
| |
|
||||| |||| |||||||||||||| | |||| |||||||||| | |||||| |
|
|
| T |
48469750 |
tatattgatataatgatgtgtccacctcagccaattattctttatatctaggtc |
48469803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 101 - 278
Target Start/End: Original strand, 48485636 - 48485811
Alignment:
| Q |
101 |
tttatcactctagagtgaaagttaattatattatccttacctttgtggtagtagcaaattaccattcccaagagaacggtagaaatcaaagtagtaacta |
200 |
Q |
| |
|
||||||||||||| ||||| |||||| |||| ||||||||| ||||||||| |||| || | |||||||| || || || | || |||||||| | |
|
|
| T |
48485636 |
tttatcactctagggtgaaggttaatcatat---ccttaccttggtggtagtaacaaaatattactcccaagataatggcagcagccagagtagtaagca |
48485732 |
T |
|
| Q |
201 |
gaacaattatcagccactttctgttatgatgatcttcatttacttcataagctg-aagaaagtgatacaaatgttaatc |
278 |
Q |
| |
|
| ||| |||||||| || ||||||||||||||||||||| |||||| | ||||| ||||||||||||| |||||||||| |
|
|
| T |
48485733 |
gcacagttatcagcaaccttctgttatgatgatcttcatctacttcttgagctgaaagaaagtgatactaatgttaatc |
48485811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University