View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7033_low_9 (Length: 408)
Name: NF7033_low_9
Description: NF7033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7033_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 5 - 400
Target Start/End: Complemental strand, 38818215 - 38817818
Alignment:
| Q |
5 |
agagttttggggctaaaacgagattaaaatatctcagcaatttatttaatgcatagaaattcacataaaagaatacatcataactatccttgccagttac |
104 |
Q |
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| T |
38818215 |
agagttttggggctaaaacgagattaaaatatctcagcaatttatttaatgcatagaaattgacataaaagaatacatcataactatccttgccagttac |
38818116 |
T |
|
| Q |
105 |
cacagtaattcctttnnnnnnnnn--gttaccagtgtaattctcaactttgttaatcttgaatttacatttcacagtttctatttagcatgaaatatttc |
202 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38818115 |
cacagtaattccttttaaaaaaaaaagttaccagtgtaattctcaactttgttaatcttgaatttacatttcacagtttctatttagcatgaaatatttc |
38818016 |
T |
|
| Q |
203 |
agaaacacgtgaatttccaaatgttaccttgtacactgcaccaaatccaccctctccaaccttattttcttttgagaagtaacttgttgcaagttttatt |
302 |
Q |
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| T |
38818015 |
agaaacacgtgaatttccaaatgttaccttgtacactgcaccaaatccaccctctccaaccttattttcttttgagaagtaacttgttgcaagttttatt |
38817916 |
T |
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| Q |
303 |
gtgagataatcaaatactatcaaatcagaaccatttctattgagatcttcttcaggtgctgataaatgtatccccaatctgtacatcattcttgtaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38817915 |
gtgagataatcaaatactatcaaatcagaaccattttcattgagatcttcgtcaggtgctgataaatgtatccccaatctgtacatcattcttgtaat |
38817818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 23 - 400
Target Start/End: Original strand, 48477414 - 48477788
Alignment:
| Q |
23 |
cgagattaaaatatctcagcaatttatttaatgcatagaaattcacataaaagaatacatcataactatccttgccagttaccacagtaattcctttnnn |
122 |
Q |
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| T |
48477414 |
cgagattaaaatatctcaacaagttatttaatgcatagaaattctcataaaagaatacgaaattactatccttaccagttaccacagtaattcctctaaa |
48477513 |
T |
|
| Q |
123 |
nnnnnngttaccagtgtaattctcaactttgttaatcttgaatttacatttcacagtttctatttagcatgaaatatttcagaaacacgtgaatttccaa |
222 |
Q |
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||||||| |||||| |||| |||| ||||||| ||||| ||| ||||||||| ||||| ||||||||||||||| ||||| | | ||||||| |
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| T |
48477514 |
ataaaagttaccacggtaattgtcaattttgctaatcttcaattttcatatcacagtttttattt-gcatgaaatatttcacaaacaggag--tttccaa |
48477610 |
T |
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| Q |
223 |
atgttaccttgtacactgcaccaaatccaccctctccaaccttattttcttttgagaagtaacttgttgcaagttttattgtgagataatcaaatactat |
322 |
Q |
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| T |
48477611 |
atgttaccttgtacactgcaccaaatccaccctctccaaccttattttctgttgagaagtaacttgttgcaagttttattgtgagataatcaaatactat |
48477710 |
T |
|
| Q |
323 |
caaatcagaaccatttctattgagatcttcttcaggtgctgataaatgtatccccaatctgtacatcattcttgtaat |
400 |
Q |
| |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
48477711 |
caaatcagaaccattttcattgagatcttcgtcaggtgctgataaatgtatcctcaatctgtacaccattcttgtaat |
48477788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 5 - 400
Target Start/End: Original strand, 48469073 - 48469464
Alignment:
| Q |
5 |
agagttttggggctaaaacgagattaaaa-tatctcagcaatttatttaatgcatagaaattcacataaaagaatacatcataactatccttgccagtta |
103 |
Q |
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||||||||||||||| ||||||||||| |||| | ||||||||| ||||||| ||||||||||||||||||||||| || ||||||||| ||||||| |
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| T |
48469073 |
agagttttggggctat--cgagattaaaaatatcaaaacaatttattcaatgcattgaaattcacataaaagaatacataattactatccttaccagtta |
48469170 |
T |
|
| Q |
104 |
ccacagtaattcctttnnnnnnnnngttaccagtgtaattctcaactttgttaatcttgaatttacatttcacagtttctatttagcatgaaatatttca |
203 |
Q |
| |
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||||| |||||||| | ||||||| | |||| |||| |||| ||||||| |||||||||||||| |||| |||| ||||||||| ||||| |
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| T |
48469171 |
ccacaataattcctctaaaaaaaaagttaccacagcaattgtcaattttgctaatcttcaatttacatttcaccgttttcattt-gcatgaaatttttca |
48469269 |
T |
|
| Q |
204 |
gaaacacgtgaatttccaaatgttaccttgtacactgcaccaaatccaccctctccaaccttattttcttttgagaagtaacttgttgcaagttttattg |
303 |
Q |
| |
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|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48469270 |
gaaaca--tgaatttccaaatgataccttgtacactgcaccaaatccaccctctccaaccttattttcttttgagaagtaacttgttgcaagttttattg |
48469367 |
T |
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| Q |
304 |
tgagataatcaaatactatcaaatcagaaccatttctattgagatcttcttcaggtgctgataaatgtatccccaatctgtacatcattcttgtaat |
400 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
48469368 |
tgagataatcaaatactatcaaatcagaaccattttcattgagaccttcgtcaggtgctgataaatgtatcctcaatctgtacatcattcttgtaat |
48469464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 138 - 399
Target Start/End: Original strand, 48485274 - 48485533
Alignment:
| Q |
138 |
gtaattctcaactttgttaatcttgaatttacatttcacagtttctatttagcatgaaatatttcagaaacacgtgaatttccaaatgttaccttgtaca |
237 |
Q |
| |
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|||||| | |||||| ||||||| ||||||||||||||||||||||||| |||||||||||||| |||| || |||| || ||||||||||||||| |
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| T |
48485274 |
gtaattgtgaacttttctaatcttcaatttacatttcacagtttctattt--catgaaatatttcaccaacagatgtattttcatatgttaccttgtaca |
48485371 |
T |
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| Q |
238 |
ctgcaccaaatccaccctctccaaccttattttcttttgagaagtaacttgttgcaagttttattgtgagataatcaaatactatcaaatcagaaccatt |
337 |
Q |
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|| ||||||||||||||||||||| |||||||||||||||||||| | |||||| | ||| ||||||||||||| ||||||||| |||||||||||||| |
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| T |
48485372 |
ctacaccaaatccaccctctccaagcttattttcttttgagaagttatctgttgccactttaattgtgagataattaaatactattaaatcagaaccatt |
48485471 |
T |
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| Q |
338 |
tctattgagatcttcttcaggtgctgataaatgtatccccaatctgtacatcattcttgtaa |
399 |
Q |
| |
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|| ||||||||||||||||| ||||||||||| ||||| || | |||| ||||||||||||| |
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| T |
48485472 |
tccattgagatcttcttcagctgctgataaatatatcctcattttgtatatcattcttgtaa |
48485533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 220 - 400
Target Start/End: Complemental strand, 48884551 - 48884375
Alignment:
| Q |
220 |
caaatgttaccttgtacactgcaccaaatccaccctctccaaccttattttcttttgagaagtaacttgttgcaagttttattgtgagataatcaaatac |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||| | |||||||||||||||||||||||| |
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| T |
48884551 |
caaatgttaccttgtacactgcaccaaatccaccctctccggccttattttcttttgagaagtaacctcttgctacttttattgtgagataatcaaatac |
48884452 |
T |
|
| Q |
320 |
tatcaaatcagaaccatttctattgagatcttcttcaggtgctgataaatgtatccccaatctgtacatcattcttgtaat |
400 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
48884451 |
tatcaaatcagaaccatttc----cagatcttcttcaggtgctgataaatgtatcctcaatctgtacatcattcttgtaat |
48884375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 48485213 - 48485279
Alignment:
| Q |
48 |
atttaatgcatagaaattcacataaaagaatacatcataactatccttgccagttaccacagtaatt |
114 |
Q |
| |
|
||||| ||| |||||||||| || |||||||||||||| |||||||| ||||||| |||||||||| |
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|
| T |
48485213 |
atttagtgcctagaaattcatattaaagaatacatcattgctatccttaccagttatcacagtaatt |
48485279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 48884617 - 48884571
Alignment:
| Q |
5 |
agagttttggggctaaaacgagattaaaatatctcagcaatttatttaa |
53 |
Q |
| |
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||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
48884617 |
agagttttggggctat--cgagattaaaatatctcaacaatttatttaa |
48884571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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