View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7034_high_3 (Length: 333)

Name: NF7034_high_3
Description: NF7034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7034_high_3
NF7034_high_3
[»] chr5 (3 HSPs)
chr5 (156-318)||(40797519-40797681)
chr5 (1-133)||(40797409-40797528)
chr5 (156-205)||(41612842-41612891)
[»] chr6 (5 HSPs)
chr6 (173-318)||(8848935-8849080)
chr6 (156-201)||(23158121-23158166)
chr6 (156-201)||(18763106-18763151)
chr6 (156-201)||(20014730-20014775)
chr6 (156-207)||(31575107-31575158)
[»] chr7 (7 HSPs)
chr7 (156-318)||(39700514-39700676)
chr7 (76-121)||(6015836-6015881)
chr7 (156-207)||(27260683-27260734)
chr7 (156-207)||(45623325-45623376)
chr7 (156-201)||(9334209-9334255)
chr7 (120-153)||(45623307-45623340)
chr7 (156-207)||(26643043-26643095)
[»] scaffold0022 (1 HSPs)
scaffold0022 (156-318)||(152801-152963)
[»] chr4 (4 HSPs)
chr4 (156-257)||(43591268-43591368)
chr4 (156-207)||(581746-581797)
chr4 (156-205)||(581439-581488)
chr4 (120-153)||(43592211-43592244)
[»] chr2 (2 HSPs)
chr2 (160-228)||(28381778-28381846)
chr2 (79-119)||(5668242-5668282)
[»] chr8 (2 HSPs)
chr8 (156-219)||(22928113-22928177)
chr8 (86-119)||(11405927-11405960)
[»] chr3 (2 HSPs)
chr3 (161-212)||(22159166-22159218)
chr3 (156-207)||(6509911-6509962)
[»] chr1 (2 HSPs)
chr1 (86-121)||(12252568-12252603)
chr1 (156-220)||(15718776-15718841)


Alignment Details
Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 156 - 318
Target Start/End: Original strand, 40797519 - 40797681
Alignment:
Q  156 atacctattaataaagagaaaacttttgtttggtgtagcctattttctttcccaaattacccttcttcttttatgagaatttcccaatttgccagttaaa 255  Q
    |||| |||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40797519 atacttattaataaagagaaaacttttatttagcgtagcctattttctttcccaaattacccttcttcttttatgagaatttcccaatttgccagttaaa 40797618  T
Q  256 actgaacatcagtttgaaaactcccctcaaatccttcttctgtaaaccgtatgtcttttatga 318  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40797619 actgaacaacagtttgaaaactcccttcaaatccttcttctgtaaaccgtatgtcttttatga 40797681  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 40797409 - 40797528
Alignment:
Q  1 tcaaaaaaggtcaaatgctcaaacaccaacactaattaaactccttaaacaatagtacaaagaaagtaccagaacgatggattccgaaatttcaataagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |             || ||||||||||||||||||||||    
T  40797409 tcaaaaaaggtcaaatgctcaaacaccaacactaattaaactccttaaacaatagtatcagg-------------gacggattccgaaatttcaataagt 40797495  T
Q  101 ggggtcaaagttgtttatcatctatacctatta 133  Q
    ||||||||||| ||||||||||||||| |||||    
T  40797496 ggggtcaaagtggtttatcatctatacttatta 40797528  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 41612842 - 41612891
Alignment:
Q  156 atacctattaataaagagaaaacttttgtttggtgtagcctattttcttt 205  Q
    ||||||||||||||||  || ||||| |||||||||||||||||||||||    
T  41612842 atacctattaataaaggcaatactttggtttggtgtagcctattttcttt 41612891  T

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Target: chr6 (Bit Score: 126; Significance: 6e-65; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 173 - 318
Target Start/End: Complemental strand, 8849080 - 8848935
Alignment:
Q  173 gaaaacttttgtttggtgtagcctattttctttcccaaattacccttcttcttttatgagaatttcccaatttgccagttaaaactgaacatcagtttga 272  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8849080 gaaaacttttgtttggtgtagcctaatttctttcccaaattatccttctttttttatgagaatttcccaatttgccagttaaaactgaacaacagtttga 8848981  T
Q  273 aaactcccctcaaatccttcttctgtaaaccgtatgtcttttatga 318  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  8848980 aaactcccctcaaatccttcttttgtaaaccgtatgtcttttatga 8848935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 23158121 - 23158166
Alignment:
Q  156 atacctattaataaagagaaaacttttgtttggtgtagcctatttt 201  Q
    ||||||||||||||||| || |||||||||||||||||||||||||    
T  23158121 atacctattaataaagacaatacttttgtttggtgtagcctatttt 23158166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 18763106 - 18763151
Alignment:
Q  156 atacctattaataaagagaaaacttttgtttggtgtagcctatttt 201  Q
    ||||||||||||||||| |  |||||||||||||||||||||||||    
T  18763106 atacctattaataaagacagtacttttgtttggtgtagcctatttt 18763151  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 20014730 - 20014775
Alignment:
Q  156 atacctattaataaagagaaaacttttgtttggtgtagcctatttt 201  Q
    ||||||||||||||||  || |||||||||||||||||||||||||    
T  20014730 atacctattaataaaggcaatacttttgtttggtgtagcctatttt 20014775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 31575158 - 31575107
Alignment:
Q  156 atacctattaataaagagaaaacttttgtttggtgtagcctattttctttcc 207  Q
    ||||||||||||||||  || ||||| ||||| |||||||||||||||||||    
T  31575158 atacctattaataaaggcaatactttggtttgatgtagcctattttctttcc 31575107  T

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Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 156 - 318
Target Start/End: Original strand, 39700514 - 39700676
Alignment:
Q  156 atacctattaataaagagaaaacttttgtttggtgtagcctattttctttcccaaattacccttcttcttttatgagaatttcccaatttgccagttaaa 255  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| || |||    
T  39700514 atacctattaataaaggtaaaacttttgtttggtgtagcctattttctttcctaaattacccttctttttttatgagaatttcccaatttgcccgtcaaa 39700613  T
Q  256 actgaacatcagtttgaaaactcccctcaaatccttcttctgtaaaccgtatgtcttttatga 318  Q
    | |||| | ||||||| ||||||||| ||| ||   ||  ||||||||| | |||||||||||    
T  39700614 attgaaaaacagtttggaaactccccccaattctacctgttgtaaaccgcaagtcttttatga 39700676  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 6015881 - 6015836
Alignment:
Q  76 gatggattccgaaatttcaataagtggggtcaaagttgtttatcat 121  Q
    ||||||| | |||||||||||||||||||||||| |||||||||||    
T  6015881 gatggatccagaaatttcaataagtggggtcaaaattgtttatcat 6015836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 27260734 - 27260683
Alignment:
Q  156 atacctattaataaagagaaaacttttgtttggtgtagcctattttctttcc 207  Q
    |||||||||||||||| ||||||||   |||||||||||||||||| |||||    
T  27260734 atacctattaataaagggaaaacttagttttggtgtagcctattttttttcc 27260683  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 45623325 - 45623376
Alignment:
Q  156 atacctattaataaagagaaaacttttgtttggtgtagcctattttctttcc 207  Q
    ||||||||||||||||  || |||||  ||||||||||||||||||||||||    
T  45623325 atacctattaataaaggcaatactttcttttggtgtagcctattttctttcc 45623376  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 9334255 - 9334209
Alignment:
Q  156 atacctattaataaagagaaaac-ttttgtttggtgtagcctatttt 201  Q
    ||||||||||||||||  ||||| |||||||||||||||||||||||    
T  9334255 atacctattaataaaggcaaaacattttgtttggtgtagcctatttt 9334209  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 45623307 - 45623340
Alignment:
Q  120 atctatacctattattctatacctattaataaag 153  Q
    |||||||||||||| |||||||||||||||||||    
T  45623307 atctatacctattaatctatacctattaataaag 45623340  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 26643043 - 26643095
Alignment:
Q  156 atacctattaataaagagaaaacttttgttt-ggtgtagcctattttctttcc 207  Q
    ||||||||||||||||  || |||||| ||| |||||||||||||||||||||    
T  26643043 atacctattaataaaggcaatacttttcttttggtgtagcctattttctttcc 26643095  T

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Target: scaffold0022 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 156 - 318
Target Start/End: Complemental strand, 152963 - 152801
Alignment:
Q  156 atacctattaataaagagaaaacttttgtttggtgtagcctattttctttcccaaattacccttcttcttttatgagaatttcccaatttgccagttaaa 255  Q
    ||||||||||||||||  ||||| ||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  152963 atacctattaataaaggcaaaacatttgtttcgtgtagcctattttctttcctaaattacccttctttttttatgagaatttcccaatttgcccgttaaa 152864  T
Q  256 actgaacatcagtttgaaaactcccctcaaatccttcttctgtaaaccgtatgtcttttatga 318  Q
    | |||| | ||||||| ||||||||| ||| ||   ||  ||||||||| | |||||||||||    
T  152863 attgaaaaacagtttggaaactccccccaattctacctgttgtaaaccgcaagtcttttatga 152801  T

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Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 156 - 257
Target Start/End: Original strand, 43591268 - 43591368
Alignment:
Q  156 atacctattaataaagagaaaacttttgtttggtgtagcctattttctttcccaaattacccttcttcttttatgagaatttcccaatttgccagttaaa 255  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||    
T  43591268 atacctattaataaagggaaaacttttgtttggtgtagcctattttctttcccaaattacccttctt-ttttatgagaattttccaatatgccaattaaa 43591366  T
Q  256 ac 257  Q
    ||    
T  43591367 ac 43591368  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 581746 - 581797
Alignment:
Q  156 atacctattaataaagagaaaacttttgtttggtgtagcctattttctttcc 207  Q
    ||||||||||||||||| || |||||  ||||||||||||||||||||||||    
T  581746 atacctattaataaagacaatactttaatttggtgtagcctattttctttcc 581797  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 581439 - 581488
Alignment:
Q  156 atacctattaataaagagaaaacttttgtttggtgtagcctattttcttt 205  Q
    ||||||||||||||||  || ||||| |||||||||||||||||||||||    
T  581439 atacctattaataaaggcaatactttagtttggtgtagcctattttcttt 581488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 43592211 - 43592244
Alignment:
Q  120 atctatacctattattctatacctattaataaag 153  Q
    |||||||||||||| |||||||||||||||||||    
T  43592211 atctatacctattaatctatacctattaataaag 43592244  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 28381778 - 28381846
Alignment:
Q  160 ctattaataaagagaaaacttttgtttggtgtagcctattttctttcccaaattacccttcttctttta 228  Q
    |||||||||||| ||||||||   |||||||||||||| |||||||||||  |||||||| ||||||||    
T  28381778 ctattaataaagggaaaacttagttttggtgtagcctactttctttcccattttacccttattctttta 28381846  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 5668282 - 5668242
Alignment:
Q  79 ggattccgaaatttcaataagtggggtcaaagttgtttatc 119  Q
    |||||| |||||||||||||||||||||||  |||||||||    
T  5668282 ggattcagaaatttcaataagtggggtcaatattgtttatc 5668242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 22928113 - 22928177
Alignment:
Q  156 atacctattaataaagagaaaacttttgtttggtgtagcctatttt-ctttcccaaattaccctt 219  Q
    ||||||||||||||||| ||||| | ||||||||||||||| |||| | |||| |||||||||||    
T  22928113 atacctattaataaagacaaaacatgtgtttggtgtagccttttttccattccaaaattaccctt 22928177  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 11405960 - 11405927
Alignment:
Q  86 gaaatttcaataagtggggtcaaagttgtttatc 119  Q
    ||||||||||||||||||||||||||| ||||||    
T  11405960 gaaatttcaataagtggggtcaaagttatttatc 11405927  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 22159218 - 22159166
Alignment:
Q  161 tattaataaagagaaaac-ttttgtttggtgtagcctattttctttcccaaat 212  Q
    |||||||||||  ||||| ||||||||||||||||||||||| ||||||||||    
T  22159218 tattaataaaggcaaaacattttgtttggtgtagcctattttttttcccaaat 22159166  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 6509962 - 6509911
Alignment:
Q  156 atacctattaataaagagaaaacttttgtttggtgtagcctattttctttcc 207  Q
    ||||||||||||||||  || ||||| ||||||| |||||||||||||||||    
T  6509962 atacctattaataaagccaatactttggtttggtatagcctattttctttcc 6509911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 121
Target Start/End: Complemental strand, 12252603 - 12252568
Alignment:
Q  86 gaaatttcaataagtggggtcaaagttgtttatcat 121  Q
    |||||||||||||||||||||||| |||||||||||    
T  12252603 gaaatttcaataagtggggtcaaaattgtttatcat 12252568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 15718776 - 15718841
Alignment:
Q  156 atacctattaataaagagaaaacttttgtttggtgtagcctattttct-ttcccaaattacccttc 220  Q
    ||||||||||||||||  || || ||  ||||||||||| |||||||| |||||||||||||||||    
T  15718776 atacctattaataaaggcaatacattactttggtgtagcatattttctattcccaaattacccttc 15718841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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