View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7034_low_2 (Length: 444)

Name: NF7034_low_2
Description: NF7034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7034_low_2
NF7034_low_2
[»] chr1 (12 HSPs)
chr1 (165-431)||(3362926-3363196)
chr1 (18-270)||(7839635-7839887)
chr1 (69-375)||(17739262-17739565)
chr1 (190-307)||(8236772-8236889)
chr1 (98-251)||(15421559-15421711)
chr1 (100-212)||(27318990-27319101)
chr1 (69-251)||(2130379-2130560)
chr1 (108-212)||(12726709-12726813)
chr1 (330-430)||(15421787-15421890)
chr1 (18-73)||(17734824-17734879)
chr1 (114-300)||(16527104-16527290)
chr1 (335-380)||(2130641-2130686)
[»] chr5 (5 HSPs)
chr5 (21-431)||(20685332-20685742)
chr5 (75-425)||(4237066-4237419)
chr5 (52-289)||(19222326-19222562)
chr5 (44-149)||(23114647-23114753)
chr5 (100-177)||(26266799-26266876)
[»] chr7 (8 HSPs)
chr7 (22-284)||(6531574-6531838)
chr7 (72-279)||(35103591-35103799)
chr7 (59-433)||(1751330-1751701)
chr7 (132-290)||(10013688-10013845)
chr7 (69-251)||(1864734-1864915)
chr7 (324-431)||(4873735-4873846)
chr7 (100-202)||(9046548-9046650)
chr7 (327-375)||(11243071-11243119)
[»] chr4 (15 HSPs)
chr4 (68-310)||(26492774-26493015)
chr4 (23-202)||(22809087-22809272)
chr4 (98-300)||(4743244-4743445)
chr4 (18-202)||(18749844-18750029)
chr4 (108-202)||(18750167-18750261)
chr4 (96-251)||(11377029-11377184)
chr4 (97-251)||(29367479-29367633)
chr4 (69-289)||(55268205-55268424)
chr4 (107-228)||(13510407-13510527)
chr4 (329-430)||(17295074-17295178)
chr4 (18-171)||(17295271-17295424)
chr4 (294-381)||(36709134-36709221)
chr4 (98-281)||(24493405-24493586)
chr4 (328-374)||(17465528-17465574)
chr4 (328-381)||(55268461-55268514)
[»] chr8 (3 HSPs)
chr8 (18-284)||(18571830-18572096)
chr8 (41-300)||(24887330-24887589)
chr8 (18-300)||(25431541-25431823)
[»] chr6 (3 HSPs)
chr6 (117-375)||(1423602-1423859)
chr6 (95-251)||(34108526-34108681)
chr6 (98-289)||(23639353-23639543)
[»] chr2 (5 HSPs)
chr2 (18-289)||(36129609-36129881)
chr2 (95-289)||(29952014-29952207)
chr2 (135-248)||(29956829-29956941)
chr2 (107-251)||(31590062-31590205)
chr2 (328-374)||(21511355-21511401)
[»] scaffold0148 (1 HSPs)
scaffold0148 (18-171)||(12883-13037)
[»] chr3 (5 HSPs)
chr3 (109-202)||(12697061-12697154)
chr3 (44-149)||(27992081-27992187)
chr3 (100-177)||(22653542-22653619)
chr3 (155-220)||(6461873-6461937)
chr3 (100-177)||(11271751-11271828)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 165 - 431
Target Start/End: Complemental strand, 3363196 - 3362926
Alignment:
Q  165 gaaacataaaatatattagagaaacttgtctttagaaaatgaatttaatataagatgaaaatataggcttcgattgttagtgatttgctattaccacgaa 264  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  3363196 gaaacttaaaatatattagagaaacttgtctttagaaaatgaatttaatataagatgaaaatataggcttcgattgttagtgatttgttattacgacgaa 3363097  T
Q  265 tcaataatccctagacgcttct--tatagtctgaatttaaaccaaaaaatgttgaaactcgaatacttaatcttttcagctaatcacaattgaaaacaat 362  Q
     |||||||||||||||||||||  |||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |     
T  3363096 ccaataatccctagacgcttcttatataatctgaatttaaaccaaaaactgttgaaactcgaatgcttaatcttttcagctaatcacaattgaaaacgaa 3362997  T
Q  363 atcggtaattacaataa--ctgtgtgaaacaatatttatactactcgatagcaccgtacacttgcggattc 431  Q
    |||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3362996 atcggtaattacaataactctctgtgaaacaatatttatactactcgatagcaccgtacacttgcggattc 3362926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 7839635 - 7839887
Alignment:
Q  18 acaaatgagattagacaaagtgagcaaaacatgagaatggttttgtaaactttgaggccataagtttcgtagtcaagggatttcaatgacaatcaaccat 117  Q
    ||||||||||||||| || |||||||||||||| |||| ||||||||||| || || | |||||||||| | | ||  ||||||||||||  ||| | ||    
T  7839635 acaaatgagattagataaggtgagcaaaacatgtgaatagttttgtaaacctttagactataagtttcgcacttaaatgatttcaatgaccgtcagctat 7839734  T
Q  118 gagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtctttagaaaatgaatttaatataa 217  Q
    ||||||| |||||||||  ||||||||||||| ||| |||| |||||||||| | ||||||| | |||||||||||||||||||||||| |||||  |||    
T  7839735 gagaataggtttggttgttattgaaatacattcgtgtattctgaaaggaaacgtgaaatataatggagaaacttgtctttagaaaatgagtttaacgtaa 7839834  T
Q  218 gatgaaaatataggcttcgattgttagtgatttgctattaccacgaatcaata 270  Q
    ||| ||||||| |||||  |||||| ||||||||||||||  ||||| |||||    
T  7839835 gataaaaatatgggcttgaattgtttgtgatttgctattaagacgaaccaata 7839887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 69 - 375
Target Start/End: Original strand, 17739262 - 17739565
Alignment:
Q  69 ttgaggccataagtttcgtagtcaagggatttcaatgacaatcaaccatgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaa 168  Q
    ||||||| ||||||||||   | || || ||||||| ||||||||||||||||||| |  || |||  ||||||| ||| |  ||||||| ||||||||     
T  17739262 ttgaggcaataagtttcgctcttaaagggtttcaataacaatcaaccatgagaatatgcgtgattgttattgaaacacactcatggattctgaaaggaac 17739361  T
Q  169 cataaaatatattagagaaacttgtctttagaaaatgaatttaatataagatgaaaatataggcttcgattgttagtgatttgctattaccacgaatcaa 268  Q
    ||| ||||| ||||||||||||||||||||| | | | ||||||| ||||| ||||||||||| || || |||||||||||||  ||||| ||||| |||    
T  17739362 catgaaatacattagagaaacttgtctttag-atacggatttaatttaagaggaaaatataggtttggaatgttagtgatttgtcattacgacgaaccaa 17739460  T
Q  269 taatccctagacgcttcttatagtctgaatttaaaccaaaaaatgttgaaactcgaatacttaatcttttcagctaatcacaattgaaaacaatatcggt 368  Q
      ||||||||| |||| ||||| ||| || |||| || |||| |||||||  || || |||||  ||||| |||||||||||||| ||||  | ||| ||    
T  17739461 cgatccctagatgctt-ttataatctaaaattaatcctaaaactgttgaatttctaa-acttatacttttaagctaatcacaattaaaaaggaaatcagt 17739558  T
Q  369 aattaca 375  Q
    |||||||    
T  17739559 aattaca 17739565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 190 - 307
Target Start/End: Original strand, 8236772 - 8236889
Alignment:
Q  190 ttgtctttagaaaatgaatttaatataagatgaaaatataggcttcgattgttagtgatttgctattaccacgaatcaataatccctagacgcttcttat 289  Q
    ||||| ||||||||||||||||| ||||||| |||| |||||||| |||||||||||||||| |||||| ||||  ||||||||||||||||||| ||||    
T  8236772 ttgtcgttagaaaatgaatttaacataagataaaaacataggcttggattgttagtgatttgttattacgacgagccaataatccctagacgctt-ttat 8236870  T
Q  290 agtctgaa-tttaaaccaa 307  Q
    | |||||| ||||||||||    
T  8236871 aatctgaactttaaaccaa 8236889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 98 - 251
Target Start/End: Original strand, 15421559 - 15421711
Alignment:
Q  98 tttcaatgacaatcaaccatgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtcttt 197  Q
    ||||||| ||||||||||||||||||| |  || |||  ||||||| ||| |  ||||||| |||||||| ||| ||||| |||| ||||||||||||||    
T  15421559 tttcaataacaatcaaccatgagaataggcgtgattgttattgaaacacactcatggattctgaaaggaaccatgaaatacattaaagaaacttgtcttt 15421658  T
Q  198 agaaaatgaatttaatataagatgaaaatataggcttcgattgttagtgatttg 251  Q
    |||||  | ||||||| ||||| ||||||||||| || |||||| |||||||||    
T  15421659 agaaacag-atttaatttaagaggaaaatataggtttggattgtaagtgatttg 15421711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 100 - 212
Target Start/End: Original strand, 27318990 - 27319101
Alignment:
Q  100 tcaatgacaatcaaccatgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtctttag 199  Q
    ||||| ||||||||||||||||||| | ||||||| ||||||||||||||| || |||  |||||||||||| |||||  | |||||| ||| |||||||    
T  27318990 tcaataacaatcaaccatgagaataggcttggttgtcattgaaatacatttctgtattttgaaaggaaacatgaaatacctaagagaatcttttctttag 27319089  T
Q  200 aaaatgaatttaa 212  Q
    |||| ||||||||    
T  27319090 aaaa-gaatttaa 27319101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 251
Target Start/End: Original strand, 2130379 - 2130560
Alignment:
Q  69 ttgaggccataagtttcgtagtcaagggatttcaatgacaatcaaccatgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaa 168  Q
    ||||||| ||||||||||   | || || ||||||| ||||||||||||||||| | |  || |||  ||||||| ||| |  ||||||| ||||||||     
T  2130379 ttgaggcaataagtttcgctcttaaagggtttcaataacaatcaaccatgagaaaaggcgtgattgttattgaaacacactcatggattctgaaaggaac 2130478  T
Q  169 cataaaatatattagagaaacttgtctttagaaaatgaatttaatataagatgaaaatataggcttcgattgttagtgatttg 251  Q
    ||| ||||| ||| ||||||||||||||||||||  | ||||||| ||||| ||||||||| | || |||||| |||||||||    
T  2130479 catgaaatacatttgagaaacttgtctttagaaacag-atttaatttaagaggaaaatatatgtttggattgtaagtgatttg 2130560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 108 - 212
Target Start/End: Complemental strand, 12726813 - 12726709
Alignment:
Q  108 aatcaaccatgagaataa-gtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtctttagaaaatga 206  Q
    |||||||||||||||||| | |||||||  ||||| |||||||| |  |||| ||||||||||||||||||  | |||||| |||||||| |||||| ||    
T  12726813 aatcaaccatgagaataaagcttggttgttattgagatacatttatatattctgaaaggaaacataaaataactaagagaatcttgtcttaagaaaa-ga 12726715  T
Q  207 atttaa 212  Q
    ||||||    
T  12726714 atttaa 12726709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 430
Target Start/End: Original strand, 15421787 - 15421890
Alignment:
Q  330 taatcttttcagctaatcacaattgaaaacaatatcggtaattacaataact--gtgtgaaacaatatttatactac-tcgatagcaccgtacacttgcg 426  Q
    ||| ||||||||||||||||||||||||| || |||  ||||||||||||||   |||| |||||||||| |||||| | ||||  ||||| ||||||||    
T  15421787 taaacttttcagctaatcacaattgaaaagaaaatcaataattacaataactccatgtggaacaatatttttactactttgataaaaccgtgcacttgcg 15421886  T
Q  427 gatt 430  Q
    ||||    
T  15421887 gatt 15421890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 17734879 - 17734824
Alignment:
Q  18 acaaatgagattagacaaagtgagcaaaacatgagaatggttttgtaaactttgag 73  Q
    ||||||||| |||||||| ||||||||||||||||||| |||| || |||||||||    
T  17734879 acaaatgagcttagacaaggtgagcaaaacatgagaatagtttcgtgaactttgag 17734824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 300
Target Start/End: Complemental strand, 16527290 - 16527104
Alignment:
Q  114 ccatgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtctttagaaaatgaatttaat 213  Q
    ||||||||||| || || |||  ||||||| ||| |  ||||||| |||||||| ||  |||||  |||||||||||||||||||  ||| | |||||||    
T  16527290 ccatgagaataggtgtgattgttattgaaacacactcatggattctgaaaggaaccaggaaatacgttagagaaacttgtcttta-taaacggatttaat 16527192  T
Q  214 ataagatgaaaatataggcttcgattgttagtgatttgctattaccacgaatcaataatccct-agacgcttcttatagtctgaattt 300  Q
     ||||| ||||||||| | || |||||| ||| |||||  ||||  | ||| |||||||| || |||||||| ||||  |||||||||    
T  16527191 ttaagaggaaaatatatgtttggattgtgagtaatttgtcattaggatgaaccaataatctctgagacgctttttattatctgaattt 16527104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 380
Target Start/End: Original strand, 2130641 - 2130686
Alignment:
Q  335 ttttcagctaatcacaattgaaaacaatatcggtaattacaataac 380  Q
    |||||||||||||||||||||||| || |||  |||||||||||||    
T  2130641 ttttcagctaatcacaattgaaaagaaaatcaataattacaataac 2130686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 138; Significance: 6e-72; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 21 - 431
Target Start/End: Original strand, 20685332 - 20685742
Alignment:
Q  21 aatgagattagacaaagtgagcaaaacatgagaatggttttgtaaactttgaggccataa-gtttcgtagtcaagggatttcaatgacaatcaaccatga 119  Q
    ||||||||||||||| ||||| ||||||||||||| ||||| ||||| ||||| |||||| |||||  | | || | |||||||||||  ||||||||||    
T  20685332 aatgagattagacaaggtgagtaaaacatgagaatagttttataaaccttgagaccataaagtttcacacttaaagtatttcaatgacggtcaaccatga 20685431  T
Q  120 gaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtctttagaaaatgaatttaatataaga 219  Q
    ||||| ||||| |||  |||||||||||||  ||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||    
T  20685432 gaatatgtttgattgttattgaaatacattcatggattctgaaaggaaacatgaaatataatagagaaacttgtctttagaaaatgaatttaacataaga 20685531  T
Q  220 tgaaaatataggcttcgattgttagtgatttgctattaccacgaatcaataatccctagacgcttcttatagtctgaatttaaaccaaaaaa--tgttga 317  Q
    | |||||||||||||  ||||||||||||||| || ||  | ||| |||||||||||| |||||| ||||| | ||||||| |||||| |||  ||||||    
T  20685532 taaaaatataggcttgaattgttagtgatttgttaataagatgaaccaataatccctatacgctt-ttataatatgaattttaaccaagaaaactgttga 20685630  T
Q  318 aactcgaatacttaatcttttcagctaatcacaattgaaaacaata-tcggtaattacaataactgtgtgaaacaatatttatactactcgatagcaccg 416  Q
    |  || || |||| ||||   ||||||||||  ||||||||||| | | |||||||||||||||| |||| ||| |||||| ||||||| ||||| ||      
T  20685631 acttctaaaacttgatct---cagctaatcaacattgaaaacaaaaattggtaattacaataactctgtggaacgatatttttactacttgatagaacta 20685727  T
Q  417 tacacttgcggattc 431  Q
    ||  |||||||||||    
T  20685728 tatgcttgcggattc 20685742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 75 - 425
Target Start/End: Original strand, 4237066 - 4237419
Alignment:
Q  75 ccataagtttcgtagtcaagggatttcaatgacaatcaaccatgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaa 174  Q
    |||||||||||| | | || |||||||||||||| |||||||||| |||||||||||||   ||||| ||||||| ||||||||  ||||||||||| ||    
T  4237066 ccataagtttcgcacttaaaggatttcaatgacagtcaaccatgataataagtttggtttttattgacatacattcgtggattctaaaaggaaacatgaa 4237165  T
Q  175 atatattagagaaacttgtctttagaaaatgaatttaatataagatgaaaatataggcttcgattgttagtgatttgctattaccacgaatcaataatcc 274  Q
    ||||| |||||||||||||| |||||| || | ||||| ||||||| |||||||||||||  |||||| |||||||| | |||  ||||| |||||||||    
T  4237166 atataatagagaaacttgtccttagaatataattttaacataagataaaaatataggcttgaattgtttgtgatttgttcttaagacgaaccaataatcc 4237265  T
Q  275 ctagacgcttcttatagtctgaatttaaacca--aaaaatgttgaaactcgaatacttaatcttttcagctaatcacaattgaaaacaatatcggtaatt 372  Q
    |||||||||| ||||| ||||||||| |||||  |||| |||||||  ||||||||||||| |||||| ||||| |  |||| |||| | ||||||||||    
T  4237266 ctagacgctt-ttataatctgaattttaaccaagaaaattgttgaacttcgaatacttaatattttcaactaattaacattggaaacgaaatcggtaatt 4237364  T
Q  373 acaataactgt--gtgaaacaatatttatactactcgatagcaccgtacacttgc 425  Q
    ||||||||| |  ||||||| |||||| ||||||| ||||| || |||| |||||    
T  4237365 acaataactctccgtgaaacgatatttttactacttgatagaactgtacgcttgc 4237419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 52 - 289
Target Start/End: Original strand, 19222326 - 19222562
Alignment:
Q  52 gaatggttttgtaaactttgaggccataagtttcgtagtcaagggatttcaatgacaatcaaccatgagaataagtttggttgccattgaaatacatttg 151  Q
    |||| |||||||||   ||||||| ||||||||||   | || || ||||||| ||||||||||||||||||| |  || |||  ||||||| ||| |      
T  19222326 gaatagttttgtaagtattgaggcaataagtttcgctcttaaagggtttcaataacaatcaaccatgagaatatgcgtgattgttattgaaacacactca 19222425  T
Q  152 tggattccgaaaggaaacataaaatatattagagaaacttgtctttagaaaatgaatttaatataagatgaaaatataggcttcgattgttagtgatttg 251  Q
    ||||||| |||||||| ||| ||||| ||||||||||||||||||||  ||| | ||||||| |||||  |||||||||| || |||||| ||| |||||    
T  19222426 tggattctgaaaggaaccatgaaatacattagagaaacttgtcttta-taaacggatttaatttaagagcaaaatataggtttggattgtgagtaatttg 19222524  T
Q  252 ctattaccacgaatcaataatccctagacgcttcttat 289  Q
      ||||| | ||| |||||||| | |||||||| ||||    
T  19222525 tcattacaatgaaccaataatcacgagacgctttttat 19222562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 149
Target Start/End: Original strand, 23114647 - 23114753
Alignment:
Q  44 aaacatgagaatggttttgtaaactttgaggccataa-gtttcgtagtcaagggatttcaatgacaatcaaccatgagaataagtttggttgccattgaa 142  Q
    |||||||||||| || | |||||| ||||| || ||| |||||||  | || || ||||||| |||||||||||||||||||  | ||||||  ||||||    
T  23114647 aaacatgagaatagtctagtaaaccttgagaccttaaagtttcgttcttaaagggtttcaataacaatcaaccatgagaatagttgtggttgttattgaa 23114746  T
Q  143 atacatt 149  Q
    |||||||    
T  23114747 atacatt 23114753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 26266799 - 26266876
Alignment:
Q  100 tcaatgacaatcaaccatgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaata 177  Q
    ||||||| ||||||||||||||||||  ||| ||   ||||| |||||||| || ||||  |||||||||||||||||    
T  26266799 tcaatgataatcaaccatgagaataaacttgattattattgagatacatttatgtattctcaaaggaaacataaaata 26266876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 22 - 284
Target Start/End: Original strand, 6531574 - 6531838
Alignment:
Q  22 atgagattagacaaagtgagcaaaacatgagaatggttttgtaaactttgaggccataa--gtttcgtagtcaagggatttcaatgacaatcaaccatga 119  Q
    |||||||||||||| ||  ||||||||||||||| ||||||||||| ||||| |  |||  ||||| |  | || ||||||||||  |||||||||||||    
T  6531574 atgagattagacaaggtttgcaaaacatgagaatagttttgtaaaccttgagactttaaaagtttcattcttaaaggatttcaatagcaatcaaccatga 6531673  T
Q  120 gaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtctttagaaaatgaatttaatataaga 219  Q
    |||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||| ||| ||||||    
T  6531674 gaataactttggttgccattgaaatacgtttgtggatttcgaaaggaaacataaaatacattcgagaaacttgtctttagaaaacgaatctaaaataaga 6531773  T
Q  220 tgaaaatataggcttcgattgttagtgatttgctattaccacgaatcaataatccctagacgctt 284  Q
    |||||| |||||||| |||||||||||||||| |||||  || || |||||||||||||||||||    
T  6531774 tgaaaacataggcttggattgttagtgatttgttattatgacaaaccaataatccctagacgctt 6531838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 72 - 279
Target Start/End: Complemental strand, 35103799 - 35103591
Alignment:
Q  72 aggccataagtttcgtagtcaagggatttcaatgacaatcaaccatgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacat 171  Q
    ||||||||||||||| | | || ||||||||||||||||||||||||||||||   |||||||  |||||||||||||  || |||| ||||| ||||||    
T  35103799 aggccataagtttcgcacttaaaggatttcaatgacaatcaaccatgagaatagacttggttgttattgaaatacattcatgtattctgaaagaaaacat 35103700  T
Q  172 aaaatatattagagaaacttgtctttagaaaatgaatttaatataagatgaaaatataggcttcgattgttagtgatttg-ctattaccacgaatcaata 270  Q
     |||||||  ||||||||||||||||||||||   |||||| |||||||||||||||||||||  |||||||||||||||  |||||  ||||| |||||    
T  35103699 gaaatataagagagaaacttgtctttagaaaacagatttaacataagatgaaaatataggcttgaattgttagtgatttgtttattaagacgaaccaata 35103600  T
Q  271 atccctaga 279  Q
    |||||||||    
T  35103599 atccctaga 35103591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 59 - 433
Target Start/End: Original strand, 1751330 - 1751701
Alignment:
Q  59 tttgtaaactttgaggccataagtttcgtagtcaagggatttcaatgacaatcaaccatgagaataagtttggttgccattgaaatacatttgtggattc 158  Q
    ||||||||| ||||| |||||||||||| | | ||  |||||||||||||||||||||||| |||| | |||||||  |||| ||||| || ||||||||    
T  1751330 tttgtaaaccttgagaccataagtttcgcacttaaatgatttcaatgacaatcaaccatgaaaatagggttggttgttattgcaatacgttcgtggattc 1751429  T
Q  159 cgaaaggaaacataaaatatattagagaaacttgtctttagaaaa--tgaatttaatataagatgaaaatataggcttcgattgttagtgatttgctatt 256  Q
      |||||||||||||||||||||||||||||||||||||||| ||  ||       ||| |||| |||||| ||||||  ||||||  ||||||| ||||    
T  1751430 ttaaaggaaacataaaatatattagagaaacttgtctttagacaagctg-------tattagataaaaatacaggcttaaattgtttatgatttgttatt 1751522  T
Q  257 accacgaatcaataatccctagacgcttcttatagtctgaatttaaaccaa-aaaatgttgaaactcgaatacttaatcttttcagctaatcacaattga 355  Q
    |  || || |||||||||| | |||||| ||||| ||||||||| |||||| ||| | ||  |  || || |||| |||||||| ||||||||  |||||    
T  1751523 aagacaaaccaataatccccatacgctttttataatctgaattttaaccaagaaactattcgacttctaa-acttgatcttttctgctaatcaacattga 1751621  T
Q  356 aaacaatatcggtaattacaataa--ctgtgtgaaacaatatttatactactcgatagcaccgtacacttgcggattcat 433  Q
    |||| | |||||||||||||||||  || |||| ||| ||| || ||||||||||||| ||| ||| |||||||||||||    
T  1751622 aaacgaaatcggtaattacaataactctctgtggaacgatacttttactactcgatagaaccatacgcttgcggattcat 1751701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 132 - 290
Target Start/End: Complemental strand, 10013845 - 10013688
Alignment:
Q  132 ttgccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtctttagaaaatgaatttaatataagatgaaaatatagg 231  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||| | ||||||  |||||||||||||||||    
T  10013845 ttgccattgaaatacacttgtggattccgaaaggaaacataaaatacattagaggaacttgtctttag-aaacggatttaacctaagatgaaaatatagg 10013747  T
Q  232 cttcgattgttagtgatttgctattaccacgaatcaataatccctagacgcttcttata 290  Q
     || | |||| ||| |||||  ||||| ||||| |||||||||| |||| ||| |||||    
T  10013746 tttgggttgtgagtaatttgtcattacgacgaaccaataatcccaagacactttttata 10013688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 69 - 251
Target Start/End: Original strand, 1864734 - 1864915
Alignment:
Q  69 ttgaggccataagtttcgtagtcaagggatttcaatgacaatcaaccatgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaa 168  Q
    ||||||| ||||||||||   | || |||||||||| ||||||||||||||||||| |  || ||   ||||||| ||| |  ||||||| ||||||||     
T  1864734 ttgaggcaataagtttcgctcttaaaggatttcaataacaatcaaccatgagaataggcgtgatttttattgaaacacactcatggattctgaaaggaac 1864833  T
Q  169 cataaaatatattagagaaacttgtctttagaaaatgaatttaatataagatgaaaatataggcttcgattgttagtgatttg 251  Q
    |||||||||||||||| ||||| |||||||| ||| ||||||||| ||||| ||||||||||| || |||||| ||| |||||    
T  1864834 cataaaatatattagacaaactcgtctttag-aaacgaatttaatttaagaggaaaatataggtttggattgtgagtaatttg 1864915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 431
Target Start/End: Original strand, 4873735 - 4873846
Alignment:
Q  324 aatacttaatcttttcagctaatcacaattgaaaacaatatcggtaattacaataa--ctgtgtgaaacaatat--ttatactactcgatagcaccgtac 419  Q
    |||||||||||||||||||||||||  ||||||||| | ||| |||||||||||||  || |||  ||| ||||  || |||||||| |||| |||||||    
T  4873735 aatacttaatcttttcagctaatcatcattgaaaacgaaatctgtaattacaataactctctgtagaacgatattcttgtactactcaatagaaccgtac 4873834  T
Q  420 acttgcggattc 431  Q
    ||||||||||||    
T  4873835 acttgcggattc 4873846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 202
Target Start/End: Original strand, 9046548 - 9046650
Alignment:
Q  100 tcaatgacaatcaaccatgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtctttag 199  Q
    ||||||| |||||| |||||||||||| ||| ||  |||||| |||||||  || |||| |||||||||||| ||||  |  ||||||  ||||||||||    
T  9046548 tcaatgataatcaatcatgagaataagcttgattatcattgagatacattcatgtattctgaaaggaaacatgaaatgcaaaagagaatattgtctttag 9046647  T
Q  200 aaa 202  Q
    |||    
T  9046648 aaa 9046650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 11243071 - 11243119
Alignment:
Q  327 acttaatcttttcagctaatcacaattgaaaacaatatcggtaattaca 375  Q
    |||| ||||||||||||||||| |||| ||||||| |||| ||||||||    
T  11243071 acttgatcttttcagctaatcataattaaaaacaagatcgttaattaca 11243119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 68 - 310
Target Start/End: Complemental strand, 26493015 - 26492774
Alignment:
Q  68 tttgaggccataagtttcgtagtcaagggatttcaatgacaatcaaccatgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaa 167  Q
    ||||||||||||||||| |   | || || ||||||||| ||||||||||||||||| ||||||||   |||||||||| ||  || ||||||||| |||    
T  26493015 tttgaggccataagtttagcccttaaagggtttcaatgataatcaaccatgagaataggtttggttattattgaaatacgttcatgtattccgaaaagaa 26492916  T
Q  168 acataaaatatattagagaaacttgtctttagaaaatgaatttaatataagatgaaaatataggcttcgattgttagtgatttgctattaccacgaatca 267  Q
    |||| ||||||| |||||||||||||||||||||||||||||||| ||||||| ||||  ||||||| |||||||||||||||| |||||| ||||| ||    
T  26492915 acatgaaatataatagagaaacttgtctttagaaaatgaatttaacataagataaaaacttaggctttgattgttagtgatttgttattacgacgaacca 26492816  T
Q  268 ataatccctagacgcttcttatagtctgaatttaaaccaaaaa 310  Q
    ||||||||||||||||| ||||| |||||||||||| ||||||    
T  26492815 ataatccctagacgctt-ttataatctgaatttaaaacaaaaa 26492774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 22809272 - 22809087
Alignment:
Q  23 tgagattagacaaagtgagcaaaacatgagaatggttttgtaaactttgaggccat-aagtttcgtagtcaagggatttcaatgacaa-----tcaacca 116  Q
    ||||||||||||| ||  ||||||||||||||| ||||||||||| ||||| || | |||||||||  | || ||||||| || ||||     |||||||    
T  22809272 tgagattagacaaggtttgcaaaacatgagaatagttttgtaaaccttgagaccttaaagtttcgttcttaatggatttcgataacaatcatttcaacca 22809173  T
Q  117 tgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtctttagaaa 202  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  22809172 tgagaataagtttgattgccattgaaatacacttgtggattccgaaagaaaacataaaatacattagggaaacttgtctttagaaa 22809087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 98 - 300
Target Start/End: Original strand, 4743244 - 4743445
Alignment:
Q  98 tttcaatgacaatcaaccatgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtcttt 197  Q
    ||||||| ||||||||||||||||||| |  || |||| ||||||| ||| |  ||||||| |||||||| ||| ||||| |||||||||||||||||||    
T  4743244 tttcaataacaatcaaccatgagaataggcgtgattgctattgaaacacactcatggattctgaaaggaaccatgaaatacattagagaaacttgtcttt 4743343  T
Q  198 agaaaatgaatttaatataagatgaaaatataggcttcgattgttagtgatttgctattaccacgaatcaataatccctagacgcttcttatagtctgaa 297  Q
    || ||| ||||||||| ||||| ||||||||||| || |||||| ||| |||||  ||||| | ||| |||||||||| |||||||| ||||  ||||||    
T  4743344 ag-aaacgaatttaatttaagaggaaaatataggtttggattgtgagtaatttgtcattacgatgaagcaataatcccgagacgctttttattatctgaa 4743442  T
Q  298 ttt 300  Q
    |||    
T  4743443 ttt 4743445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 18749844 - 18750029
Alignment:
Q  18 acaaatgagattagacaaagtgagcaaaacatgagaatggttttgtaaactttgaggccataa-gtttcgtagtcaagggatttcaatgacaatcaacca 116  Q
    |||| ||||||||||||| ||  ||||||||||||||| |||  |||||| ||||| || ||| |||||||  | || ||||||  ||  ||||||||||    
T  18749844 acaagtgagattagacaatgtttgcaaaacatgagaatagttgagtaaaccttgagaccttaaagtttcgttcttaatggattttgatagcaatcaacca 18749943  T
Q  117 tgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtctttagaaa 202  Q
    |||||||| ||||| || || || ||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  18749944 tgagaataggtttgattaccgttaaaatacacttgtggattccgagaggaaacataaaatacattagagaaacttgtctttagaaa 18750029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 108 - 202
Target Start/End: Original strand, 18750167 - 18750261
Alignment:
Q  108 aatcaaccatgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtctttagaaa 202  Q
    ||||||||||||||||| ||||| || || || ||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  18750167 aatcaaccatgagaataggtttgattaccgttaaaatacacttgtggattccgagaggaaacataaaatacattagagaaacttgtctttagaaa 18750261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 96 - 251
Target Start/End: Complemental strand, 11377184 - 11377029
Alignment:
Q  96 gatttcaatgacaatcaaccatgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtct 195  Q
    ||||||||| |||||||||||||||||||||  ||||||  || ||||||||||  ||||  |||||||||   || |||||  |||||||||| | |||    
T  11377184 gatttcaataacaatcaaccatgagaataagcgtggttgttatcgaaatacattcatggaaaccgaaaggagttatgaaataccttagagaaacctatct 11377085  T
Q  196 ttagaaaatgaatttaatataagatgaaaatataggcttcgattgttagtgatttg 251  Q
    ||||||||| ||| ||| |||||| ||||||||||| || |||||  |||||||||    
T  11377084 ttagaaaataaatctaacataagaggaaaatataggtttggattgagagtgatttg 11377029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 97 - 251
Target Start/End: Original strand, 29367479 - 29367633
Alignment:
Q  97 atttcaatgacaatcaaccatgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtctt 196  Q
    |||||||| ||||||||||||||||||| |  ||||||  |||||||||||||  ||||  ||||||||| | || |||||  |||||||||| | ||||    
T  29367479 atttcaataacaatcaaccatgagaataggcatggttgttattgaaatacattcatggagaccgaaaggagatatcaaataccttagagaaacctatctt 29367578  T
Q  197 tagaaaatgaatttaatataagatgaaaatataggcttcgattgttagtgatttg 251  Q
    |||||||| ||| ||| | |||| ||||||||||| || |||||  |||||||||    
T  29367579 tagaaaataaatctaacaaaagaggaaaatataggtttggattgagagtgatttg 29367633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 289
Target Start/End: Original strand, 55268205 - 55268424
Alignment:
Q  69 ttgaggccataagtttcg-tagtcaagggatttcaatgacaatcaaccatgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaa 167  Q
    ||||||| |||||||||| || | ||||| ||||||| |||||||||||||||| || |  || |||  ||||||| ||| |  ||||||| ||||||||    
T  55268205 ttgaggcaataagtttcgctattaaaggg-tttcaataacaatcaaccatgagagtaggcgtgattgttattgaaacacaatcatggattctgaaaggaa 55268303  T
Q  168 acataaaatatattagagaaacttgtctttagaaaatgaatttaatataagatgaaaatataggcttcgattgttagtgatttgctattaccacgaatca 267  Q
     ||| ||||| ||||||||||||||||||||| ||| | ||||||| | ||| ||||||||||| || |||||| ||| |||||  ||||  | ||| ||    
T  55268304 ccatgaaatacattagagaaacttgtctttag-aaacggatttaattttagaggaaaatataggtttggattgtgagtaatttgtcattatgatgaacca 55268402  T
Q  268 ataatccctagacgcttcttat 289  Q
    ||||| || |||||||| ||||    
T  55268403 ataattccgagacgctttttat 55268424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 107 - 228
Target Start/End: Complemental strand, 13510527 - 13510407
Alignment:
Q  107 caatcaaccatgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtctttagaaaatga 206  Q
    |||||||||||||||||| |  |  |||||||||||||||| || || |||| || ||||||||||||||| ||||||||||||||| |||| |||  |     
T  13510527 caatcaaccatgagaataggcgtaattgccattgaaatacacttatgtattctgagaggaaacataaaatacattagagaaacttgtttttataaacag- 13510429  T
Q  207 atttaatataagatgaaaatat 228  Q
    |||||| ||||||| |||||||    
T  13510428 atttaacataagattaaaatat 13510407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 430
Target Start/End: Complemental strand, 17295178 - 17295074
Alignment:
Q  329 ttaatcttttcagctaatcacaattgaaaacaatatcggtaattacaataactgtgtga--aacaatatttatactactcgat-agcaccgtacacttgc 425  Q
    |||||| ||||||||||||| |||||||||  | |||||||| |||||||||| | |||  |||||||||| ||||||||||| || ||||||| |||||    
T  17295178 ttaatcatttcagctaatcataattgaaaaagaaatcggtaagtacaataactctttgaggaacaatatttttactactcgataagaaccgtacgcttgc 17295079  T
Q  426 ggatt 430  Q
    |||||    
T  17295078 ggatt 17295074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 17295424 - 17295271
Alignment:
Q  18 acaaatgagattagacaaagtgagcaaaacatgagaatggttttgtaaactttgaggccataagtttcgtagtcaagggatttcaatgacaatcaaccat 117  Q
    |||||||| |||||||||||| |||||||||||||||| ||||||  ||||||||| | ||||  ||   | | || |||| |  || ||||||||||||    
T  17295424 acaaatgaaattagacaaagtaagcaaaacatgagaatagttttgcgaactttgagacaataaaattaaaacttaaaggatcttgataacaatcaaccat 17295325  T
Q  118 gagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacat 171  Q
    ||||||| ||||| |||  || || ||||||| |||| ||| ||||||||||||    
T  17295324 gagaatatgtttgattgttatagagatacattcgtggcttctgaaaggaaacat 17295271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 381
Target Start/End: Complemental strand, 36709221 - 36709134
Alignment:
Q  294 tgaatttaaaccaaaaaatgttgaaactcgaatacttaatcttttcagctaatcacaattgaaaacaatatcggtaattacaataact 381  Q
    ||||||||||||||||| |||||||  | ||||||||||||||||||| |||| |  ||||||||| | || | ||||||||||||||    
T  36709221 tgaatttaaaccaaaaattgttgaactttgaatacttaatcttttcagataattaacattgaaaacgaaattgataattacaataact 36709134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 281
Target Start/End: Original strand, 24493405 - 24493586
Alignment:
Q  98 tttcaatgacaatcaaccatgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtcttt 197  Q
    ||||||| ||||||||||||||||||| |  || |||  ||||||| ||| |  |  |||| |||||||| ||| ||| | ||||||||||||||| |||    
T  24493405 tttcaataacaatcaaccatgagaataggcgtgattgttattgaaacacactcataaattctgaaaggaaccatgaaacacattagagaaacttgtattt 24493504  T
Q  198 agaaaatgaatttaatataagatgaaaatataggcttcgattgttagtgatttgctattaccacgaatcaataatccctagacg 281  Q
    || ||| | ||||||| ||||| | ||||||||| || |||||| ||| |||||  ||||| | ||| |||||||||| |||||    
T  24493505 ag-aaagggatttaatttaaga-ggaaatataggtttggattgtgagtaatttgtcattacgatgaaccaataatcccaagacg 24493586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 374
Target Start/End: Original strand, 17465528 - 17465574
Alignment:
Q  328 cttaatcttttcagctaatcacaattgaaaacaatatcggtaattac 374  Q
    |||||||||||||||||||||  | ||||||||| ||||||||||||    
T  17465528 cttaatcttttcagctaatcatcactgaaaacaagatcggtaattac 17465574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 381
Target Start/End: Original strand, 55268461 - 55268514
Alignment:
Q  328 cttaatcttttcagctaatcacaattgaaaacaatatcggtaattacaataact 381  Q
    ||||| |||||||||| |||||||||||||| || |||  ||||||||||||||    
T  55268461 cttaaacttttcagcttatcacaattgaaaagaaaatcaataattacaataact 55268514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 18572096 - 18571830
Alignment:
Q  18 acaaatgagattagacaaagtgagcaaaacatgagaatggttttgtaaactttgaggccataa-gtttcgtagtcaagggatttcaatgacaatcaacca 116  Q
    |||| ||||||||||||| ||  ||||||||||||||| ||||||||||||||||| || ||| |||| ||  | || |||||   ||  ||||||||||    
T  18572096 acaagtgagattagacaaggtttgcaaaacatgagaatagttttgtaaactttgagaccctaaagttttgttcttaatggattatgatagcaatcaacca 18571997  T
Q  117 tgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtctttagaaaatgaatttaatata 216  Q
    |||||||| ||||| |||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||  | |||||| |||    
T  18571996 tgagaataggtttgattgccattgaaatacacttgtggattgcgaaagaaaacataaaatatattagagaaacttgtctttagaaagag-atttaacata 18571898  T
Q  217 agatgaaaatataggcttcgattgttagtgatttgctattaccacgaatcaataatccctagacgctt 284  Q
    |||| |||||||||| || | |||| | |||||||   |||  ||||| |||||||||| ||||||||    
T  18571897 agattaaaatataggtttgggttgtcaatgatttgtctttatgacgaaccaataatcccgagacgctt 18571830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 41 - 300
Target Start/End: Original strand, 24887330 - 24887589
Alignment:
Q  41 gcaaaacatgagaatggttttgtaaactttgaggccataa-gtttcgtagtcaagggatttcaatgacaatcaaccatgagaataagtttggttgccatt 139  Q
    |||||||||||||||  |||||||||| ||||| || ||| |||||||  | || ||||||| ||| |||||||||||||||||| ||||| ||||||||    
T  24887330 gcaaaacatgagaataattttgtaaaccttgagaccttaaagtttcgttcttaatggatttcgatggcaatcaaccatgagaataggtttgattgccatt 24887429  T
Q  140 gaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtctttagaaaatgaatttaatataagatgaaaatataggcttcgatt 239  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| | ||| | ||||||  |||||| |||||||||| || | ||    
T  24887430 gaaatacacttgtggattccgaaaggaaacataaaatacattagagaaacttgtcttttg-aaacggatttaacctaagattaaaatataggtttgggtt 24887528  T
Q  240 gttagtgatttgctattaccacgaatcaataatccctagacgcttcttatagtctgaattt 300  Q
    || | ||| |||   |||| || || |||||||||| |||||||| ||||  |||||||||    
T  24887529 gtgaatgaattgtcgttacgactaaccaataatcccgagacgctttttattatctgaattt 24887589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 25431823 - 25431541
Alignment:
Q  18 acaaatgagattagacaaagtgagcaaaacatgagaatggttttgtaaactttgaggccataa-gtttcgtagtcaagggatttcaatgacaatcaacca 116  Q
    |||| |||||||||||||  |  ||| |||||||||||  |||||||||| ||||| || ||| |||||||  | || ||||||| ||  ||||||||||    
T  25431823 acaagtgagattagacaagttttgcacaacatgagaataattttgtaaaccttgagaccttaaagtttcgttcttaatggatttcgatagcaatcaacca 25431724  T
Q  117 tgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtctttagaaaatgaatttaatata 216  Q
    |||||||| ||||| |||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| ||| | ||||||  ||    
T  25431723 tgagaataggtttgattgccattgaaatacacttgtggatgccgaaaggaaacataaaatacattagagaaacttgtctttag-aaacggatttaaccta 25431625  T
Q  217 agatgaaaatataggcttcgattgttagtgatttgctattaccacgaatcaataatccctagacgcttcttatagtctgaattt 300  Q
    |||| |||||||||| || | |||| | ||| |||   |||| || || |||||||||| |||||||| ||||  |||||||||    
T  25431624 agattaaaatataggtttgggttgtgaatgaattgtcgttacgactaaccaataatcccgagacgctttttattatctgaattt 25431541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 6e-47; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 117 - 375
Target Start/End: Complemental strand, 1423859 - 1423602
Alignment:
Q  117 tgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtctttagaaaatgaatttaatata 216  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| || ||||||||||||||||||  ||| ||| |||    
T  1423859 tgagaataggtttggttgccattgaaatacatttgtggatttcgaaaggaaacataaaatacattcgataaacttgtctttagaaaacaaatctaaaata 1423760  T
Q  217 agatgaaaatataggcttcgattgttagtgatttgctattaccacgaatcaataatccctagacgcttcttatagtctgaatttaaaccaaaaaatgttg 316  Q
     | |||||| |||||||| |||||||||| |||||  ||||| ||||| |||| |||||||||| ||| ||||| | | ||||||||||||||  |||||    
T  1423759 gggtgaaaacataggcttggattgttagtaatttgtcattacgacgaaccaattatccctagactctt-ttataatataaatttaaaccaaaatctgttg 1423661  T
Q  317 aaactcgaatact-taatcttttcagctaatcacaattgaaaacaatatcggtaattaca 375  Q
    ||  || || ||| ||||  ||||||| ||||| |||||||||  | |||||||||||||    
T  1423660 aacttctaa-actctaattatttcagcaaatcataattgaaaaataaatcggtaattaca 1423602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 95 - 251
Target Start/End: Complemental strand, 34108681 - 34108526
Alignment:
Q  95 ggatttcaatgacaatcaaccatgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtc 194  Q
    ||||||||||  ||||||| |||||||||| |  || |||||||||||||||| || || |||| || ||||||||||||||| ||||||||||||||||    
T  34108681 ggatttcaatagcaatcaatcatgagaataggcgtgattgccattgaaatacacttatgcattctgagaggaaacataaaatacattagagaaacttgtc 34108582  T
Q  195 tttagaaaatgaatttaatataagatgaaaatataggcttcgattgttagtgatttg 251  Q
    ||||| ||| | ||||||||||||||  | ||||||| || |||||| |||||||||    
T  34108581 tttag-aaacggatttaatataagatttagatataggtttggattgtaagtgatttg 34108526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 289
Target Start/End: Complemental strand, 23639543 - 23639353
Alignment:
Q  98 tttcaatgacaatcaaccatgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtcttt 197  Q
    ||||||| ||||||||||||||||||| |  || ||   ||||||| | | |  |||||||||| ||||| | | ||||| |||||||||||||||||||    
T  23639543 tttcaataacaatcaaccatgagaataggcgtgattattattgaaacatactcatggattccgagaggaaccttgaaatacattagagaaacttgtcttt 23639444  T
Q  198 agaaaatgaatttaatataagatgaaaatataggcttcgattgttagtgatttgctattaccacgaatcaataatccctagacgcttcttat 289  Q
    || ||| | |||||| |||||||  | ||||| | || |||||| |||||||||  ||||  | ||| |||||||||| | |||||| ||||    
T  23639443 ag-aaacggatttaacataagatttagatataagtttggattgtgagtgatttgtcattatgatgaaccaataatcccgatacgctttttat 23639353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 36129881 - 36129609
Alignment:
Q  18 acaaatgagattagacaaagtgagcaaaacatgagaatggttttgtaaactttgaggccataa--gtttcgtagtcaagggatttcaatgacaatcaacc 115  Q
    |||| |||||| |||||| ||  ||||||||||||||| |||  |||||| |||||  | |||  |||||||  | || |||||| |||  ||||||| |    
T  36129881 acaagtgagatcagacaaggtttgcaaaacatgagaatagttgagtaaaccttgagatcttaaaagtttcgttcttaatggattttaatagcaatcaaac 36129782  T
Q  116 atgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtctttagaaaatgaatttaatat 215  Q
    ||||||||| |  || |||||||||||||||| || || ||||  | ||||||||||||||| ||||||||||||||||||||| ||| | |||||| ||    
T  36129781 atgagaataggcgtgattgccattgaaatacacttatgtattctaagaggaaacataaaatagattagagaaacttgtctttag-aaacggatttaacat 36129683  T
Q  216 aagatgaaaatataggcttcgattgttagtgatttgctattaccacgaatcaataatccctagacgcttcttat 289  Q
    |||||  ||||||||| || |||||| |||||||||  ||||  ||||| |||||||| | |||||||| ||||    
T  36129682 aagatttaaatataggtttggattgtgagtgatttgtcattatgacgaaccaataatcgcgagacgctttttat 36129609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 95 - 289
Target Start/End: Original strand, 29952014 - 29952207
Alignment:
Q  95 ggatttcaatgacaatcaaccatgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtc 194  Q
    ||||||||||  |||||||||||||||||| |  || ||||||||||||| || || || ||||  | |||||||| |||||| |||||||||| |||||    
T  29952014 ggatttcaatagcaatcaaccatgagaatatgcgtgattgccattgaaattcacttatgtattcttagaggaaacaaaaaatacattagagaaaattgtc 29952113  T
Q  195 tttagaaaatgaatttaatataagatgaaaatataggcttcgattgttagtgatttgctattaccacgaatcaataatccctagacgcttcttat 289  Q
    ||||| |||  ||||||| |||||||  ||||||||| || |||||| |||||||||  ||||  | ||| |||||||||| |||||||| ||||    
T  29952114 tttag-aaacaaatttaacataagatttaaatataggtttggattgtgagtgatttgtcattatgatgaaccaataatcccgagacgctttttat 29952207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 29956829 - 29956941
Alignment:
Q  135 ccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtctttagaaaatgaatttaatataagatgaaaatataggctt 234  Q
    ||||||||||||| || || |||| || ||||||||||||||| ||||||||||||||||||||||||  | |||||| |||||||  ||||||||| ||    
T  29956829 ccattgaaatacacttatgtattctgagaggaaacataaaatacattagagaaacttgtctttagaaacag-atttaacataagatttaaatataggttt 29956927  T
Q  235 cgattgttagtgat 248  Q
     |||||| ||||||    
T  29956928 ggattgtgagtgat 29956941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 107 - 251
Target Start/End: Complemental strand, 31590205 - 31590062
Alignment:
Q  107 caatcaaccatgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtctttagaaaatga 206  Q
    ||||||||||||| |||| |  || ||||| || ||||||| || || ||| ||| ||||||||||||||| ||||||||||||||| ||||| ||| |     
T  31590205 caatcaaccatgataataggcgtgattgccgttaaaatacacttatgcatttcgagaggaaacataaaatacattagagaaacttgtatttag-aaacgg 31590107  T
Q  207 atttaatataagatgaaaatataggcttcgattgttagtgatttg 251  Q
    ||| || |||||||  | ||||||| || |||||| |||||||||    
T  31590106 attaaacataagatttagatataggtttggattgtgagtgatttg 31590062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 374
Target Start/End: Complemental strand, 21511401 - 21511355
Alignment:
Q  328 cttaatcttttcagctaatcacaattgaaaacaatatcggtaattac 374  Q
    |||||||||||||||||| ||  ||||||||||| ||||||||||||    
T  21511401 cttaatcttttcagctaagcatcattgaaaacaagatcggtaattac 21511355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 12883 - 13037
Alignment:
Q  18 acaaatgaga-ttagacaaagtgagcaaaacatgagaatggttttgtaaactttgaggccataagtttcgtagtcaagggatttcaatgacaatcaacca 116  Q
    |||||||||| ||||||||||| ||||||| |||||||| ||||||| ||||||||| |  |||  ||   | | || |||| ||||| |||||||||||    
T  12883 acaaatgagaattagacaaagtaagcaaaatatgagaatagttttgtgaactttgagacattaaaattaaaacttaaaggatctcaataacaatcaacca 12982  T
Q  117 tgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacat 171  Q
    ||| |||| ||||| |||  || || ||||||| |||| ||||||||||||||||    
T  12983 tgataataggtttgattgttatagagatacattcgtggcttccgaaaggaaacat 13037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 202
Target Start/End: Complemental strand, 12697154 - 12697061
Alignment:
Q  109 atcaaccatgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaatatattagagaaacttgtctttagaaa 202  Q
    ||||||||||||||||||  || |||  ||||||| ||| |  |||||||||||||||| | | ||||| ||||||||||||||||||||||||    
T  12697154 atcaaccatgagaataagcgtgattgttattgaaacacactcatggattccgaaaggaaccttgaaatacattagagaaacttgtctttagaaa 12697061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 149
Target Start/End: Complemental strand, 27992187 - 27992081
Alignment:
Q  44 aaacatgagaatggttttgtaaactttgaggccataa-gtttcgtagtcaagggatttcaatgacaatcaaccatgagaataagtttggttgccattgaa 142  Q
    |||||||||||| || | |||||| ||||| || ||| |||||||  | || || ||||||| |||||||||||| ||||||||  ||||||| ||||||    
T  27992187 aaacatgagaatagtctagtaaaccttgagaccttaaagtttcgttcttaaagggtttcaataacaatcaaccataagaataagcgtggttgctattgaa 27992088  T
Q  143 atacatt 149  Q
    |||||||    
T  27992087 atacatt 27992081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 22653619 - 22653542
Alignment:
Q  100 tcaatgacaatcaaccatgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaata 177  Q
    ||||| ||||||||||||||||||| |||||||||  ||| | |||||||  || |||| |||||||||||| |||||    
T  22653619 tcaataacaatcaaccatgagaataggtttggttgttattcagatacattcatgaattctgaaaggaaacatgaaata 22653542  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 6461873 - 6461937
Alignment:
Q  155 attccgaaaggaaacataaaatatattagagaaacttgtctttagaaaatgaatttaatataagat 220  Q
    ||||||||||||||||||||||| |  |||||   || ||||||| ||||||||||||||||||||    
T  6461873 attccgaaaggaaacataaaatacaaaagagatttttatctttag-aaatgaatttaatataagat 6461937  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 11271751 - 11271828
Alignment:
Q  100 tcaatgacaatcaaccatgagaataagtttggttgccattgaaatacatttgtggattccgaaaggaaacataaaata 177  Q
    ||||||| ||||||||||||||||||| ||| ||   ||||| |||||||| |  ||||  |||||||||||||||||    
T  11271751 tcaatgataatcaaccatgagaataagcttgattattattgagatacatttatatattctaaaaggaaacataaaata 11271828  T

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