View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7034_low_3 (Length: 403)
Name: NF7034_low_3
Description: NF7034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7034_low_3 |
 | |
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| [»] scaffold0009 (1 HSPs) |
| | |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 29868095 - 29868326
Alignment:
| Q |
14 |
aaatcaacatttgaaatatggaatttcctcaaaattgaatatgaaggaaatgaaagaattaggagaatgcaagcgcttaatttgattcgagaatttgaga |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
29868095 |
aaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattaggggaatgcaagcgcttaatttgattcgagaatttgaga |
29868194 |
T |
|
| Q |
114 |
tacaaaagatgacggagtctgaatcaatcaaatagtatgcaaataaacttattagcattgcaaacaaagtaagattgcttggttctgaattgtctgattt |
213 |
Q |
| |
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| |||||||||| |||||||||| |||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
29868195 |
tgcaaaagatgaaggagtctgaaacaattaaagagtatgcaaataaacttattagcattgctaacaaagtaagattgcttggttctgaattgtctgattc |
29868294 |
T |
|
| Q |
214 |
aagaatatttcagaaaatactcttgactgtcc |
245 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| |
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|
| T |
29868295 |
aagaatagttcagaaaatactcgtgactgtcc |
29868326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 626619 - 626850
Alignment:
| Q |
14 |
aaatcaacatttgaaatatggaatttcctcaaaattgaatatgaaggaaatgaaagaattaggagaatgcaagcgcttaatttgattcgagaatttgaga |
113 |
Q |
| |
|
|||||| ||||||||||||||||| || |||||||||||||||||||| |||||||||||||| | |||||||| |||||||||||| |||||||||||| |
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|
| T |
626619 |
aaatcagcatttgaaatatggaatatcttcaaaattgaatatgaaggagatgaaagaattagggggatgcaagcacttaatttgattggagaatttgaga |
626718 |
T |
|
| Q |
114 |
tacaaaagatgacggagtctgaatcaatcaaatagtatgcaaataaacttattagcattgcaaacaaagtaagattgcttggttctgaattgtctgattt |
213 |
Q |
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| |||||||||| |||||||||| |||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
626719 |
tgcaaaagatgaaggagtctgaaacaattaaagagtatgcaaataaacttattagcattgctaacaaagtaagattgcttggttctgaattatctgattc |
626818 |
T |
|
| Q |
214 |
aagaatatttcagaaaatactcttgactgtcc |
245 |
Q |
| |
|
||||||| |||||||||||| ||||||||| |
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|
| T |
626819 |
aagaataggtcagaaaatacttgtgactgtcc |
626850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 249 - 339
Target Start/End: Original strand, 16179758 - 16179849
Alignment:
| Q |
249 |
ggaggcaacaaaatacttacatggggaagaaattcgaattctgaatgtgaaagaaattcgaatgggaactatgaat-tgctagaaattgaaa |
339 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||| |
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|
| T |
16179758 |
ggaggcagaaaaatacttacctggggaagaaatttgaattctgaatatgaaagaaattcgaatgggaactatgaatctgcaagaaattgaaa |
16179849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 14 - 245
Target Start/End: Complemental strand, 20786254 - 20786023
Alignment:
| Q |
14 |
aaatcaacatttgaaatatggaatttcctcaaaattgaatatgaaggaaatgaaagaattaggagaatgcaagcgcttaatttgattcgagaatttgaga |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
20786254 |
aaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattaggggaatgcaagcgcttaatttgattcgagaatttgaga |
20786155 |
T |
|
| Q |
114 |
tacaaaagatgacggagtctgaatcaatcaaatagtatgcaaataaacttattagcattgcaaacaaagtaagattgcttggttctgaattgtctgattt |
213 |
Q |
| |
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| |||||||||| |||||||||| |||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
20786154 |
tgcaaaagatgaaggagtctgaaacaattaaagagtatgcaaataaacttattagcattgctaacaaagtaagattgcttggttctgaattgtctgattc |
20786055 |
T |
|
| Q |
214 |
aagaatatttcagaaaatactcttgactgtcc |
245 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| |
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|
| T |
20786054 |
aagaatagttcagaaaatactcgtgactgtcc |
20786023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 29469807 - 29470038
Alignment:
| Q |
14 |
aaatcaacatttgaaatatggaatttcctcaaaattgaatatgaaggaaatgaaagaattaggagaatgcaagcgcttaatttgattcgagaatttgaga |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
29469807 |
aaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattaggggaatgcaagcgcttaatttgattcgagaatttgaga |
29469906 |
T |
|
| Q |
114 |
tacaaaagatgacggagtctgaatcaatcaaatagtatgcaaataaacttattagcattgcaaacaaagtaagattgcttggttctgaattgtctgattt |
213 |
Q |
| |
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| |||||||||| |||||||||| |||| ||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
29469907 |
tgcaaaagatgaaggagtctgaaacaattaaagagtatgcaaataaacttattaacattgctaacaaagtaagattgcttggttctgaattgtctgattc |
29470006 |
T |
|
| Q |
214 |
aagaatatttcagaaaatactcttgactgtcc |
245 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| |
|
|
| T |
29470007 |
aagaatagttcagaaaatactcgtgactgtcc |
29470038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 19965561 - 19965792
Alignment:
| Q |
14 |
aaatcaacatttgaaatatggaatttcctcaaaattgaatatgaaggaaatgaaagaattaggagaatgcaagcgcttaatttgattcgagaatttgaga |
113 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19965561 |
aaatcagcatttgaaatatggaatttccttaaaactgaatatgaaggagatgaaagaattaggggaatgcaagcgcttaatttgattagagaatttgaga |
19965660 |
T |
|
| Q |
114 |
tacaaaagatgacggagtctgaatcaatcaaatagtatgcaaataaacttattagcattgcaaacaaagtaagattgcttggttctgaattgtctgattt |
213 |
Q |
| |
|
| |||||||||| |||||||||| |||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19965661 |
tgcaaaagatgaaggagtctgaaacaattaaagagtatgcaaataaacttattagcattgctaacaaagtaagattgcttggttctgaattgtctgattc |
19965760 |
T |
|
| Q |
214 |
aagaatatttcagaaaatactcttgactgtcc |
245 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| |
|
|
| T |
19965761 |
aagaatagttcagaaaatactcgtgactgtcc |
19965792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 14 - 245
Target Start/End: Complemental strand, 21027435 - 21027204
Alignment:
| Q |
14 |
aaatcaacatttgaaatatggaatttcctcaaaattgaatatgaaggaaatgaaagaattaggagaatgcaagcgcttaatttgattcgagaatttgaga |
113 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21027435 |
aaatcagcatttgaaatatggaatttccttaaaactgaatatgaaggagatgaaagaattaggggaatgcaagcgcttaatttgatttgagaatttgaga |
21027336 |
T |
|
| Q |
114 |
tacaaaagatgacggagtctgaatcaatcaaatagtatgcaaataaacttattagcattgcaaacaaagtaagattgcttggttctgaattgtctgattt |
213 |
Q |
| |
|
| |||||||||| |||||||||| |||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21027335 |
tgcaaaagatgaaggagtctgaaacaattaaagagtatgcaaataaacttattagcattgctaacaaagtaagattgcttggttctgaattgtctgattc |
21027236 |
T |
|
| Q |
214 |
aagaatatttcagaaaatactcttgactgtcc |
245 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| |
|
|
| T |
21027235 |
aagaatagttcagaaaatactcgtgactgtcc |
21027204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 6367886 - 6367793
Alignment:
| Q |
21 |
catttgaaatatggaatttcctcaaaattgaatatgaaggaaatgaaagaattaggagaatgcaagcgcttaatttgattcgagaatttgagat |
114 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| |||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6367886 |
catttgaaatatgaaatttcctcaaaactgaatacgaaggagatgaaagaattaggggaatgcaagcgcttaatttcattcgagaatttgagat |
6367793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 14 - 241
Target Start/End: Complemental strand, 33721754 - 33721527
Alignment:
| Q |
14 |
aaatcaacatttgaaatatggaatttcctcaaaattgaatatgaaggaaatgaaagaattaggagaatgcaagcgcttaatttgattcgagaatttgaga |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| | |||||||| ||||||||||||||||||||||||| |
|
|
| T |
33721754 |
aaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattagggggatgcaagcacttaatttgattcgagaatttgaga |
33721655 |
T |
|
| Q |
114 |
tacaaaagatgacggagtctgaatcaatcaaatagtatgcaaataaacttattagcattgcaaacaaagtaagattgcttggttctgaattgtctgattt |
213 |
Q |
| |
|
| |||||||||| |||||||||| |||| ||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
33721654 |
tgcaaaagatgaaggagtctgaaacaattaaagagtatgcaaataaacttattagcattgctaacaaagtaagattgcatggttctgaattatctgattc |
33721555 |
T |
|
| Q |
214 |
aagaatatttcagaaaatactcttgact |
241 |
Q |
| |
|
||||||| |||||||||||||| ||||| |
|
|
| T |
33721554 |
aagaatagttcagaaaatactcgtgact |
33721527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 9e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 14 - 241
Target Start/End: Complemental strand, 28698968 - 28698741
Alignment:
| Q |
14 |
aaatcaacatttgaaatatggaatttcctcaaaattgaatatgaaggaaatgaaagaattaggagaatgcaagcgcttaatttgattcgagaatttgaga |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| | |||||| | ||||||||||||||||||||||||| |
|
|
| T |
28698968 |
aaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattagggggatgcaaacacttaatttgattcgagaatttgaga |
28698869 |
T |
|
| Q |
114 |
tacaaaagatgacggagtctgaatcaatcaaatagtatgcaaataaacttattagcattgcaaacaaagtaagattgcttggttctgaattgtctgattt |
213 |
Q |
| |
|
| |||||||||| |||||||||| |||| ||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
28698868 |
tgcaaaagatgaaggagtctgaaacaattaaagagtatgcaaataaacttattagcattgctaacaaagtaagattgtttggttctgaattatctgattc |
28698769 |
T |
|
| Q |
214 |
aagaatatttcagaaaatactcttgact |
241 |
Q |
| |
|
||||||| |||||||||||||| ||||| |
|
|
| T |
28698768 |
aagaatagttcagaaaatactcgtgact |
28698741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 169304 - 169254
Alignment:
| Q |
249 |
ggaggcaacaaaatacttacatggggaagaaattcgaattctgaatgtgaa |
299 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
169304 |
ggaggcaggaaaatacttacctggggaagaaatttgaattctgaatgtgaa |
169254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 365
Target Start/End: Original strand, 93272 - 93301
Alignment:
| Q |
336 |
gaaattgaaagagatttgaaggctaatgat |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
93272 |
gaaattgaaagagatttgaaggctaatgat |
93301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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