View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7035_high_17 (Length: 251)
Name: NF7035_high_17
Description: NF7035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7035_high_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 15380777 - 15381004
Alignment:
| Q |
1 |
ctaagtatgtacatcgtatatgtactttccgttgattattctccctctctaattatttaatctatgctttgaataggtaattgatattctaaagttatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15380777 |
ctaagtatgtacatcgtatatgtactttccgttgattattctccctctctaattatttaatctatgctttgaataggtaattgatattctaaagttatct |
15380876 |
T |
|
| Q |
101 |
ttggtctcaaagactcctttgacagactttatctataaaaaggaacagtttgttggtaatttagacccaagaaaccggtcggaattttggattcgagagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15380877 |
ttggtctcaaagactcctttgacagactttatctataaaaaggaacagtttgttggtaatttagacccaagaaaccggtcggaattttggattcgagagg |
15380976 |
T |
|
| Q |
201 |
tagatgaatcatctgatgaaattaatga |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
15380977 |
tagatgaatcatctgatgaaattaatga |
15381004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 80 - 204
Target Start/End: Complemental strand, 24160702 - 24160578
Alignment:
| Q |
80 |
attgatattctaaagttatctttggtctcaaagactcctttgacagactttatctataaaaaggaacagtttgttggtaatttagacccaagaaaccggt |
179 |
Q |
| |
|
|||||| |||| ||||| || ||| | |||||| ||||| || |||||||||||| |||||||||||| |||||||||||||||||||||||||| || | |
|
|
| T |
24160702 |
attgatcttctcaagttttccttgctttcaaagtctcctctgtcagactttatctttaaaaaggaacattttgttggtaatttagacccaagaaatcgtt |
24160603 |
T |
|
| Q |
180 |
cggaattttggattcgagaggtaga |
204 |
Q |
| |
|
|||||||||||| |||||||||| |
|
|
| T |
24160602 |
tggaattttggatcggagaggtaga |
24160578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 155
Target Start/End: Complemental strand, 24145636 - 24145549
Alignment:
| Q |
68 |
tttgaataggtaattgatattctaaagttatctttggtctcaaagactcctttgacagactttatctataaaaaggaacagtttgttg |
155 |
Q |
| |
|
||||||||||| ||||| |||| || || |||||||||||||| ||||||||| | |||||||| | |||||||||||| ||||||| |
|
|
| T |
24145636 |
tttgaataggtggttgatcttctcaaattgtctttggtctcaaaaactcctttgtcggactttatatttaaaaaggaacattttgttg |
24145549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 24150621 - 24150542
Alignment:
| Q |
68 |
tttgaataggtaattgatattctaaagttatctttggtctcaaagactcctttgacagactttatctataaaaaggaaca |
147 |
Q |
| |
|
||||||||||| ||||| |||| ||||| |||||||| |||||||||||||||||| ||||||||| || |||| |||| |
|
|
| T |
24150621 |
tttgaataggttgttgatcttctcaagttgtctttggtttcaaagactcctttgacaaactttatctttacaaagcaaca |
24150542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 21200193 - 21200252
Alignment:
| Q |
83 |
gatattctaaagttatctttggtctcaaagactcctttgacagactttatctataaaaag |
142 |
Q |
| |
|
|||||||| ||||| || || ||||||||||| |||||||||||||| |||| ||||||| |
|
|
| T |
21200193 |
gatattctgaagttgtcatttgtctcaaagacccctttgacagacttcatctttaaaaag |
21200252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 24126596 - 24126490
Alignment:
| Q |
40 |
tctccctctctaattatttaatctatgctttgaataggtaattgatattctaaagttatctttggtctcaaagactcctttgacagactttatctataaa |
139 |
Q |
| |
|
|||| ||| |||||| || ||||| || |||||||||||| ||||| |||| || || |||||||||||||| |||||| || | |||||||| | |||| |
|
|
| T |
24126596 |
tctctctcactaattcttaaatctctgatttgaataggtagttgatcttctcaaattgtctttggtctcaaa-actcctctgtccgactttatatttaaa |
24126498 |
T |
|
| Q |
140 |
aaggaaca |
147 |
Q |
| |
|
||| |||| |
|
|
| T |
24126497 |
aagcaaca |
24126490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University