View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7035_high_19 (Length: 248)
Name: NF7035_high_19
Description: NF7035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7035_high_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 248
Target Start/End: Original strand, 15380363 - 15380602
Alignment:
| Q |
9 |
gaagaatatctgtggaataaaacctgcaaagaaatgctactgaagccaagggttcccatgggactttattaccggaaactcaaattcaatatcaatgaat |
108 |
Q |
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| T |
15380363 |
gaagaacatttgtggaataaaacttgcaaagaaatgctactgaaaccaagggttcccatgggactttattaccggaaactcaaattcaatatcgatgaat |
15380462 |
T |
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| Q |
109 |
cagagccgttgaggtactaccactgcgaggacaagacttgcaaaattgaaaataggtattgtgtgagcttcttcaggaatcaaaaatgtatctgtagaaa |
208 |
Q |
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| T |
15380463 |
cagagccgttgaggtactaccactgcgaggacaagacttgcaaaattgaaaataggtattgtgtgagcttcttcaggaatcaaaaatgtatctgtagaaa |
15380562 |
T |
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| Q |
209 |
attattgaaccaagaaagtttcgtaaattccctaaaagga |
248 |
Q |
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| T |
15380563 |
attattgaaccaagaaagtttcgtaaattccctaaaagga |
15380602 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 24150996 - 24150923
Alignment:
| Q |
135 |
gaggacaagacttgcaaaattgaaaataggtattgtgtgagcttcttcaggaatcaaaaatgtatctgtagaaa |
208 |
Q |
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| T |
24150996 |
gaggacaattcttgcaaaattgaaaacaggacttgtgtgagcttattcagaaatcaaacatgtatttgtggaaa |
24150923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 10989014 - 10989051
Alignment:
| Q |
21 |
tggaataaaacctgcaaagaaatgctactgaagccaag |
58 |
Q |
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| T |
10989014 |
tggaatcaaacctgcaaaaaaatgctactgaagccaag |
10989051 |
T |
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