View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7035_high_4 (Length: 496)
Name: NF7035_high_4
Description: NF7035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7035_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 7 - 371
Target Start/End: Complemental strand, 47532485 - 47532121
Alignment:
| Q |
7 |
tccaataatatggagacacaagtggcaacaacaaagaaaacggttcaaaatcatggaataatgaattaaataatcattaatgataaaaggatattaaaag |
106 |
Q |
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| T |
47532485 |
tccactaatatggagacacaagtggcaacaacaaagaaaacggttcaaaatcatggaataatgaattaaataatcattaatgataaaaggatattataag |
47532386 |
T |
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| Q |
107 |
gatgtgatcgaattattacactggacgtgtaaaaaccagcagtgcaggagagagttcgattaggggttggaggaaacagttgtgactagggttgtaaaag |
206 |
Q |
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| T |
47532385 |
gatgtgatcgaattattacactggacgtgtaaaaaccagcagtgcaggagagagttcgattaggggttggaggaaacagttgtgactagggttgtaaaag |
47532286 |
T |
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| Q |
207 |
gttaggacaaaatatgaaacctaaaaaccaatccaaaccgaattggattggtttaattctcgatcttcaattttaaaatcaaatgaaccggactgaacta |
306 |
Q |
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| T |
47532285 |
gttaggacaaaatatgaaacctaaaaaccaatccataccgaattggattggtttaattctcgatcttcaattttaaaatcaaatgaaccggaccgaacta |
47532186 |
T |
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| Q |
307 |
atgacgtattaacttgttannnnnnngcaatatatgttggtccaagcccaaaaatatgacatcac |
371 |
Q |
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| T |
47532185 |
atgacgtattaacttgttatttttttgcaatatatgttggtccaagcccaaaaatatgacatcac |
47532121 |
T |
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