View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7035_high_5 (Length: 459)
Name: NF7035_high_5
Description: NF7035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7035_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 146 - 451
Target Start/End: Original strand, 49976630 - 49976935
Alignment:
| Q |
146 |
tttatgactttgttaattattacaggagaccagatggaaatccattagaccttaacaatctgcctgatgacaactctagtagagatcaccatgctaaaca |
245 |
Q |
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| T |
49976630 |
tttatgactttgttaattattacaggagaccagatggaaatccattagaccttaacaatctgcctgatgacaactctagtagagatcaccatgctaaaca |
49976729 |
T |
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| Q |
246 |
acttcttcctgacaccacctccccaccacctggtaattcagtaatttatttaattaattaaatcttcttcttcattagtgatcacataaccaaaacaaca |
345 |
Q |
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| T |
49976730 |
acttctttctgacaccacctccccaccacctggtaattcagtaatttatttaattaattaaatcttcttcttcattagtaatcacataaccaaaacaaca |
49976829 |
T |
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| Q |
346 |
taannnnnnnnnnaatttattattttcacaatagcgcaccatgaaaataaaatgaaagactaggtcatggnnnnnnncaccatgatacattactcttttt |
445 |
Q |
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| T |
49976830 |
taattttttttttaatttattattttcacaatagcgcaccatgaaaataaaatgaaagactaggtcatggtttttttcaccatgatacattactcttttt |
49976929 |
T |
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| Q |
446 |
cttctc |
451 |
Q |
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|||||| |
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| T |
49976930 |
cttctc |
49976935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 49976514 - 49976587
Alignment:
| Q |
17 |
cttccgtcccccacttactactacaccttcatagattgatctgatcatcttctcctcttcaacttctactctatttcct |
95 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49976514 |
cttccgtcccccacttactactacaccttcatagat-----tgatcatcttctcctcttcaacttctactctatttcct |
49976587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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