View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7035_high_7 (Length: 424)

Name: NF7035_high_7
Description: NF7035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7035_high_7
NF7035_high_7
[»] chr4 (7 HSPs)
chr4 (124-424)||(39330860-39331145)
chr4 (12-82)||(39330748-39330818)
chr4 (356-411)||(29116297-29116352)
chr4 (371-412)||(16970825-16970866)
chr4 (360-424)||(40836758-40836821)
chr4 (373-421)||(40997442-40997489)
chr4 (360-424)||(48973319-48973382)
[»] chr7 (7 HSPs)
chr7 (360-424)||(49078134-49078197)
chr7 (363-412)||(29197037-29197086)
chr7 (360-412)||(5362382-5362434)
chr7 (360-412)||(34703766-34703818)
chr7 (226-346)||(32996432-32996551)
chr7 (360-393)||(6442007-6442040)
chr7 (380-424)||(5198019-5198062)
[»] chr3 (11 HSPs)
chr3 (363-424)||(30843666-30843726)
chr3 (193-291)||(40619174-40619272)
chr3 (360-412)||(34979092-34979144)
chr3 (373-424)||(26499847-26499897)
chr3 (338-422)||(46008654-46008739)
chr3 (363-421)||(1183136-1183193)
chr3 (360-422)||(23195638-23195699)
chr3 (193-277)||(621857-621939)
chr3 (217-278)||(11508070-11508131)
chr3 (371-412)||(20948299-20948340)
chr3 (196-248)||(4136535-4136587)
[»] chr2 (3 HSPs)
chr2 (363-423)||(1901619-1901678)
chr2 (193-292)||(6788469-6788568)
chr2 (259-292)||(15818570-15818603)
[»] chr1 (9 HSPs)
chr1 (191-276)||(5529869-5529954)
chr1 (222-275)||(48701717-48701770)
chr1 (193-244)||(16192275-16192326)
chr1 (360-422)||(6541133-6541194)
chr1 (373-422)||(34826991-34827039)
chr1 (220-265)||(46500805-46500850)
chr1 (193-277)||(27463749-27463833)
chr1 (221-277)||(29795258-29795314)
chr1 (363-423)||(36144969-36145028)
[»] chr6 (5 HSPs)
chr6 (371-407)||(8161349-8161385)
chr6 (219-276)||(24084628-24084685)
chr6 (218-250)||(998652-998684)
chr6 (212-244)||(6584327-6584359)
chr6 (376-424)||(31142043-31142090)
[»] chr5 (6 HSPs)
chr5 (371-422)||(917085-917135)
chr5 (219-314)||(22579466-22579560)
chr5 (370-404)||(3599942-3599976)
chr5 (217-278)||(24444393-24444454)
chr5 (196-244)||(3709609-3709657)
chr5 (364-412)||(14460072-14460120)
[»] scaffold0045 (1 HSPs)
scaffold0045 (200-242)||(20837-20879)
[»] scaffold0687 (1 HSPs)
scaffold0687 (376-424)||(1704-1751)
[»] scaffold0022 (1 HSPs)
scaffold0022 (221-277)||(82877-82933)
[»] chr8 (2 HSPs)
chr8 (376-424)||(7604020-7604067)
chr8 (326-354)||(21600558-21600586)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 124 - 424
Target Start/End: Original strand, 39330860 - 39331145
Alignment:
Q  124 ctatgggtactgtttatgtcgttttatacattccacataggataatagacactttgatccctagatgacgtgtaataagtagtcatattagcccttcaat 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||| || | |||    
T  39330860 ctatgggtactgtttatgtcgttttatacattccacataggataatagacactttggtccctggatgacgtgtaatgagtagtcatattagtcccttaat 39330959  T
Q  224 atatcaaaattttaaaatagtatctaactatgtactttgttaataaaaatagtcaccgacgctaaaatacccccctcaatactcacaataannnnnnnca 323  Q
    ||||||||||||||||||||||||| |||||| ||||||||||| ||||||||| | ||||||||||||| ||||||||||||||||||||       ||    
T  39330960 atatcaaaattttaaaatagtatctgactatgcactttgttaattaaaatagtcgctgacgctaaaatactcccctcaatactcacaataattcttttca 39331059  T
Q  324 tgtatggattgaaatgacaataagtaagtatttaattatttataatgattgatatgacaataaataaatatattgaaagactgatatgaacaatattaat 423  Q
    |||| |||||||||||||||||||||||              || |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  39331060 tgtagggattgaaatgacaataagtaag--------------tactgattgatatgacaataaataagtatattgaaagactgatat-aacaatattaat 39331144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 39330748 - 39330818
Alignment:
Q  12 gagatgaaaaagagagaatggggagcacttacttgtttgagggttttatggtttcaatgcatgatacagaa 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39330748 gagatgaaaaagagagaatggggagcacttacttgtttgagggttttatggtttcaatgcatgatacagaa 39330818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 411
Target Start/End: Original strand, 29116297 - 29116352
Alignment:
Q  356 taattatttataatgattgatatgacaataaataaatatattgaaagactgatatg 411  Q
    ||||||||||||| || | |||||||||||||||||||||||||| |||| |||||    
T  29116297 taattatttataaggactaatatgacaataaataaatatattgaatgacttatatg 29116352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 16970866 - 16970825
Alignment:
Q  371 attgatatgacaataaataaatatattgaaagactgatatga 412  Q
    ||||||||||||| ||||||||||||||| ||||| ||||||    
T  16970866 attgatatgacaaaaaataaatatattgagagactaatatga 16970825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 424
Target Start/End: Complemental strand, 40836821 - 40836758
Alignment:
Q  360 tatttataatgattgatatgacaataaataaatatattgaaagactgatatgaacaatattaatg 424  Q
    ||||||||| || |||||||| ||||| ||| | ||||||||||||| |||| ||||||||||||    
T  40836821 tatttataaggactgatatgataataagtaagtgtattgaaagactggtatg-acaatattaatg 40836758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 40997489 - 40997442
Alignment:
Q  373 tgatatgacaataaataaatatattgaaagactgatatgaacaatatta 421  Q
    |||||||||||||||||| ||||||||||||  |||||| |||||||||    
T  40997489 tgatatgacaataaataagtatattgaaagatcgatatg-acaatatta 40997442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 424
Target Start/End: Original strand, 48973319 - 48973382
Alignment:
Q  360 tatttataatgattgatatgacaataaataaatatattgaaagactgatatgaacaatattaatg 424  Q
    ||||||||| ||  ||||||||||||| ||| ||||||||| |||| ||||| ||||||||||||    
T  48973319 tatttataaggaccgatatgacaataagtaagtatattgaaggactaatatg-acaatattaatg 48973382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 360 - 424
Target Start/End: Original strand, 49078134 - 49078197
Alignment:
Q  360 tatttataatgattgatatgacaataaataaatatattgaaagactgatatgaacaatattaatg 424  Q
    ||||||||||||||||||||||||| || |||||||||||| || ||||||| ||||||||||||    
T  49078134 tatttataatgattgatatgacaattaacaaatatattgaaggattgatatg-acaatattaatg 49078197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 363 - 412
Target Start/End: Complemental strand, 29197086 - 29197037
Alignment:
Q  363 ttataatgattgatatgacaataaataaatatattgaaagactgatatga 412  Q
    |||||| ||| ||||||||||||| ||| |||||||||||||||||||||    
T  29197086 ttataacgatcgatatgacaataagtaagtatattgaaagactgatatga 29197037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 412
Target Start/End: Complemental strand, 5362434 - 5362382
Alignment:
Q  360 tatttataatgattgatatgacaataaataaatatattgaaagactgatatga 412  Q
    ||||||||| ||||||||||| ||||||||| ||||||||| |||| ||||||    
T  5362434 tatttataaggattgatatgataataaataagtatattgaaggactaatatga 5362382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 412
Target Start/End: Complemental strand, 34703818 - 34703766
Alignment:
Q  360 tatttataatgattgatatgacaataaataaatatattgaaagactgatatga 412  Q
    ||||||||||||||||||| ||||||| ||| |||| ||||||||| ||||||    
T  34703818 tatttataatgattgatataacaataagtaagtatactgaaagactaatatga 34703766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 346
Target Start/End: Complemental strand, 32996551 - 32996432
Alignment:
Q  226 atcaaaattttaaaatagtatctaactatgtactttgttaataaaaatagtcaccgacgctaaaatacccccctcaatactcacaataannnnnnncatg 325  Q
    ||||||||| ||||||||| ||| | | || ||||||||||| |||||||||  |||||||||||||  |||| ||||| ||||| |||       |||     
T  32996551 atcaaaattctaaaatagtctctgattgtgcactttgttaatcaaaatagtctacgacgctaaaataatcccc-caatattcacactaactcttttcata 32996453  T
Q  326 tatggattgaaatgacaataa 346  Q
    |||||| ||||||||||||||    
T  32996452 tatggactgaaatgacaataa 32996432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 393
Target Start/End: Original strand, 6442007 - 6442040
Alignment:
Q  360 tatttataatgattgatatgacaataaataaata 393  Q
    ||||||||| ||||||||||||||||||||||||    
T  6442007 tatttataaagattgatatgacaataaataaata 6442040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 424
Target Start/End: Original strand, 5198019 - 5198062
Alignment:
Q  380 acaataaataaatatattgaaagactgatatgaacaatattaatg 424  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||    
T  5198019 acaataaataagtatattgaaagactaatatg-acaatattaatg 5198062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 363 - 424
Target Start/End: Complemental strand, 30843726 - 30843666
Alignment:
Q  363 ttataatgattgatatgacaataaataaatatattgaaagactgatatgaacaatattaatg 424  Q
    |||||| || |||||||||||||||||| |||||||||||||| ||||| ||||||||||||    
T  30843726 ttataaggactgatatgacaataaataagtatattgaaagactaatatg-acaatattaatg 30843666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 291
Target Start/End: Complemental strand, 40619272 - 40619174
Alignment:
Q  193 gtgtaataagtagtcatattagcccttcaatatatcaaaattttaaaatagtatctaactatgtactttgttaataaaaatagtcaccgacgctaaaat 291  Q
    ||||||| |||||||||||||  || ||||| |||||||||||||||||||| ||| | | || ||| ||||| | |||||||||   |||||||||||    
T  40619272 gtgtaatgagtagtcatattaatccctcaatgtatcaaaattttaaaatagtctctgattgtgcactatgttattcaaaatagtctttgacgctaaaat 40619174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 412
Target Start/End: Original strand, 34979092 - 34979144
Alignment:
Q  360 tatttataatgattgatatgacaataaataaatatattgaaagactgatatga 412  Q
    ||||||||| ||||||||||||||||| ||| ||||||||| |||| ||||||    
T  34979092 tatttataacgattgatatgacaataagtaagtatattgaatgactaatatga 34979144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 424
Target Start/End: Complemental strand, 26499897 - 26499847
Alignment:
Q  373 tgatatgacaataaataaatatattgaaagactgatatgaacaatattaatg 424  Q
    |||||||| ||||||||| ||||||||| |||||||||||| ||||||||||    
T  26499897 tgatatgataataaataagtatattgaatgactgatatgaa-aatattaatg 26499847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 422
Target Start/End: Complemental strand, 46008739 - 46008654
Alignment:
Q  338 tgacaataagtaagtattta--attatttataatgattgatatgacaataaataaatatattgaaagactgatatgaacaatattaa 422  Q
    |||||||||||||||| |||  || | ||||||| | |||||||||||||||||| |||||| ||||| | ||||| ||||||||||    
T  46008739 tgacaataagtaagtacttataataacttataataactgatatgacaataaataagtatattaaaagattaatatg-acaatattaa 46008654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 421
Target Start/End: Original strand, 1183136 - 1183193
Alignment:
Q  363 ttataatgattgatatgacaataaataaatatattgaaagactgatatgaacaatatta 421  Q
    |||||| || |||||||||||||| || |||||||||| |||||||||| |||||||||    
T  1183136 ttataaggactgatatgacaataagtacatatattgaatgactgatatg-acaatatta 1183193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 422
Target Start/End: Original strand, 23195638 - 23195699
Alignment:
Q  360 tatttataatgattgatatgacaataaataaatatattgaaagactgatatgaacaatattaa 422  Q
    |||||| || || |||||||||||||| ||| |||||||||||||| ||||| ||||||||||    
T  23195638 tatttaaaaggactgatatgacaataattaagtatattgaaagactaatatg-acaatattaa 23195699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 277
Target Start/End: Complemental strand, 621939 - 621857
Alignment:
Q  193 gtgtaataagtagtcatattagcccttcaatatatcaaaattttaaaatagtatctaactatgtactttgttaataaaaatagtc 277  Q
    ||||||| |||||||||| ||| |  ||||| ||||||||||| ||||||||  |||||| || ||||||||| | |||||||||    
T  621939 gtgtaatgagtagtcataatagtc--tcaatgtatcaaaatttcaaaatagtccctaactgtgcactttgttagtcaaaatagtc 621857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 11508070 - 11508131
Alignment:
Q  217 cttcaatatatcaaaattttaaaatagtatctaactatgtactttgttaataaaaatagtca 278  Q
    |||| ||||||||||||||||||||| ||||||| | |||||  ||||| | ||||||||||    
T  11508070 cttctatatatcaaaattttaaaataatatctaattgtgtacgatgttagtcaaaatagtca 11508131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 20948340 - 20948299
Alignment:
Q  371 attgatatgacaataaataaatatattgaaagactgatatga 412  Q
    |||||||||||||||||||| |||||||||  ||||||||||    
T  20948340 attgatatgacaataaataagtatattgaagaactgatatga 20948299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 4136535 - 4136587
Alignment:
Q  196 taataagtagtcatattagcccttcaatatatcaaaattttaaaatagtatct 248  Q
    |||| ||||| |||| ||| | |||||||||| ||||||||||||||||||||    
T  4136535 taatgagtagccataatagtctttcaatatattaaaattttaaaatagtatct 4136587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 423
Target Start/End: Complemental strand, 1901678 - 1901619
Alignment:
Q  363 ttataatgattgatatgacaataaataaatatattgaaagactgatatgaacaatattaat 423  Q
    |||||| |||||||||||||||||||||||||||||||| | | ||||| |||||||||||    
T  1901678 ttataaagattgatatgacaataaataaatatattgaaaaattaatatg-acaatattaat 1901619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 292
Target Start/End: Complemental strand, 6788568 - 6788469
Alignment:
Q  193 gtgtaataagtagtcatattagcccttcaatatatcaaaattttaaaatagtatctaactatgtactttgttaataaaaatagtcaccgacgctaaaata 292  Q
    |||||| || |||||||| ||| | |||||| |||||||||||||||||||| ||| | | || ||||||||| | | ||||||| | || |||||||||    
T  6788568 gtgtaacaaatagtcataatagtcattcaatgtatcaaaattttaaaatagtttctgattgtgcactttgttagtcagaatagtctctgatgctaaaata 6788469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 15818603 - 15818570
Alignment:
Q  259 tttgttaataaaaatagtcaccgacgctaaaata 292  Q
    ||||||||| ||||||||||||||||||||||||    
T  15818603 tttgttaatcaaaatagtcaccgacgctaaaata 15818570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 276
Target Start/End: Complemental strand, 5529954 - 5529869
Alignment:
Q  191 acgtgtaataagtagtcatattagcccttcaatatatcaaaattttaaaatagtatctaactatgtactttgttaataaaaatagt 276  Q
    ||||||||  |||||||||| ||  |||| |||||||||||||||||||||| |  |||| |||| ||||||||| | ||||||||    
T  5529954 acgtgtaacgagtagtcataataatcctttaatatatcaaaattttaaaataatccctaattatgcactttgttagtcaaaatagt 5529869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 48701770 - 48701717
Alignment:
Q  222 atatatcaaaattttaaaatagtatctaactatgtactttgttaataaaaatag 275  Q
    |||||| |||||||||||||||||||||| |||||| ||||||| | |||||||    
T  48701770 atatattaaaattttaaaatagtatctaattatgtattttgttagtcaaaatag 48701717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 16192326 - 16192275
Alignment:
Q  193 gtgtaataagtagtcatattagcccttcaatatatcaaaattttaaaatagt 244  Q
    |||||| ||||||||||| ||  |||||||| ||||||||||||||||||||    
T  16192326 gtgtaacaagtagtcataatattccttcaatgtatcaaaattttaaaatagt 16192275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 422
Target Start/End: Complemental strand, 6541194 - 6541133
Alignment:
Q  360 tatttataatgattgatatgacaataaataaatatattgaaagactgatatgaacaatattaa 422  Q
    ||||||||| || |||||||||||||| ||| ||||||||| |||| ||||| ||||||||||    
T  6541194 tatttataaagactgatatgacaataagtaagtatattgaaggactaatatg-acaatattaa 6541133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 373 - 422
Target Start/End: Original strand, 34826991 - 34827039
Alignment:
Q  373 tgatatgacaataaataaatatattgaaagactgatatgaacaatattaa 422  Q
    |||||||||||||||||| ||||||||| |||| ||||| ||||||||||    
T  34826991 tgatatgacaataaataagtatattgaatgactaatatg-acaatattaa 34827039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 265
Target Start/End: Complemental strand, 46500850 - 46500805
Alignment:
Q  220 caatatatcaaaattttaaaatagtatctaactatgtactttgtta 265  Q
    |||||||||||||||||||||||||   ||| ||||||||||||||    
T  46500850 caatatatcaaaattttaaaatagttcataattatgtactttgtta 46500805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 277
Target Start/End: Original strand, 27463749 - 27463833
Alignment:
Q  193 gtgtaataagtagtcatattagcccttcaatatatcaaaattttaaaatagtatctaactatgtactttgttaataaaaatagtc 277  Q
    |||||||||||||||| ||||  |  ||||| ||| |||||| ||||||||| ||||| | || ||||||||| | |||||||||    
T  27463749 gtgtaataagtagtcacattattctctcaatgtattaaaattctaaaatagtctctaattttgcactttgttagtcaaaatagtc 27463833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 29795314 - 29795258
Alignment:
Q  221 aatatatcaaaattttaaaatagtatctaactatgtactttgttaataaaaatagtc 277  Q
    |||||||||||||||||||||||||| | | | || ||| ||||||| |||||||||    
T  29795314 aatatatcaaaattttaaaatagtatttgattgtgcactatgttaatcaaaatagtc 29795258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 423
Target Start/End: Original strand, 36144969 - 36145028
Alignment:
Q  363 ttataatgattgatatgacaataaataaatatattgaaagactgatatgaacaatattaat 423  Q
    |||||| || |||||||||||||| ||| |||||||||| ||| ||||| |||||||||||    
T  36144969 ttataaggactgatatgacaataactaagtatattgaaaaactaatatg-acaatattaat 36145028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 371 - 407
Target Start/End: Complemental strand, 8161385 - 8161349
Alignment:
Q  371 attgatatgacaataaataaatatattgaaagactga 407  Q
    |||||||||| ||||||||||||||||||||||||||    
T  8161385 attgatatgataataaataaatatattgaaagactga 8161349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 24084628 - 24084685
Alignment:
Q  219 tcaatatatcaaaattttaaaatagtatctaactatgtactttgttaataaaaatagt 276  Q
    ||||| |||||||||||||||||||||| ||| |||  ||||||||| | ||||||||    
T  24084628 tcaatgtatcaaaattttaaaatagtatttaaatatacactttgttagtcaaaatagt 24084685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 998684 - 998652
Alignment:
Q  218 ttcaatatatcaaaattttaaaatagtatctaa 250  Q
    ||||||||||||||||||||||||| |||||||    
T  998684 ttcaatatatcaaaattttaaaataatatctaa 998652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 244
Target Start/End: Original strand, 6584327 - 6584359
Alignment:
Q  212 tagcccttcaatatatcaaaattttaaaatagt 244  Q
    |||||| ||||||||||||||||||||||||||    
T  6584327 tagcccctcaatatatcaaaattttaaaatagt 6584359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 424
Target Start/End: Complemental strand, 31142090 - 31142043
Alignment:
Q  376 tatgacaataaataaatatattgaaagactgatatgaacaatattaatg 424  Q
    ||||||||||| |||||||||||||  ||||||||| ||||||||||||    
T  31142090 tatgacaataagtaaatatattgaagtactgatatg-acaatattaatg 31142043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 422
Target Start/End: Original strand, 917085 - 917135
Alignment:
Q  371 attgatatgacaataaataaatatattgaaagactgatatgaacaatattaa 422  Q
    ||||||||||||| |||||||||||||||| |||| ||||| ||||||||||    
T  917085 attgatatgacaaaaaataaatatattgaatgactaatatg-acaatattaa 917135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 314
Target Start/End: Complemental strand, 22579560 - 22579466
Alignment:
Q  219 tcaatatatcaaaattttaaaatagtatctaactatgtactttgttaataaaaatagtcaccgacgctaaaatacccccctcaatactcacaataa 314  Q
    ||||| |||||||||||||||||| |  || | |||  ||||||||||| ||||||||| | ||||||||||||   ||||||||||||| |||||    
T  22579560 tcaatgtatcaaaattttaaaataatccctgattatacactttgttaatcaaaatagtctcggacgctaaaata-atccctcaatactcaaaataa 22579466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 404
Target Start/End: Complemental strand, 3599976 - 3599942
Alignment:
Q  370 gattgatatgacaataaataaatatattgaaagac 404  Q
    ||||||||||||||||||||||||| |||||||||    
T  3599976 gattgatatgacaataaataaatatgttgaaagac 3599942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 24444454 - 24444393
Alignment:
Q  217 cttcaatatatcaaaattttaaaatagtatctaactatgtactttgttaataaaaatagtca 278  Q
    |||||||||||| |||||||||||| |||| | | | |||| ||||||||| ||||||||||    
T  24444454 cttcaatatatccaaattttaaaatggtatttgattgtgtattttgttaatcaaaatagtca 24444393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 3709657 - 3709609
Alignment:
Q  196 taataagtagtcatattagcccttcaatatatcaaaattttaaaatagt 244  Q
    ||||||||||||| | |||   |||||||||||||||||||||||||||    
T  3709657 taataagtagtcacaatagtaattcaatatatcaaaattttaaaatagt 3709609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 412
Target Start/End: Original strand, 14460072 - 14460120
Alignment:
Q  364 tataatgattgatatgacaataaataaatatattgaaagactgatatga 412  Q
    |||||| | |||||||||||||| ||||||||||||| |||| ||||||    
T  14460072 tataataactgatatgacaataagtaaatatattgaaggactaatatga 14460120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 20879 - 20837
Alignment:
Q  200 aagtagtcatattagcccttcaatatatcaaaattttaaaata 242  Q
    ||||||||| | ||| |||||||||||||||||||||||||||    
T  20879 aagtagtcaaaatagtccttcaatatatcaaaattttaaaata 20837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 424
Target Start/End: Complemental strand, 1751 - 1704
Alignment:
Q  376 tatgacaataaataaatatattgaaagactgatatgaacaatattaatg 424  Q
    ||||||||||| |||||||||||||||| | ||||| ||||||||||||    
T  1751 tatgacaataagtaaatatattgaaagattaatatg-acaatattaatg 1704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 82877 - 82933
Alignment:
Q  221 aatatatcaaaattttaaaatagtatctaactatgtactttgttaataaaaatagtc 277  Q
    |||||||||||||| ||||||||||||| | | | || ||||||||| |||||||||    
T  82877 aatatatcaaaattctaaaatagtatctgattgtatattttgttaatcaaaatagtc 82933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 424
Target Start/End: Complemental strand, 7604067 - 7604020
Alignment:
Q  376 tatgacaataaataaatatattgaaagactgatatgaacaatattaatg 424  Q
    ||||||||||| |||||||||||||||| | ||||| ||||||||||||    
T  7604067 tatgacaataagtaaatatattgaaagattaatatg-acaatattaatg 7604020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 354
Target Start/End: Complemental strand, 21600586 - 21600558
Alignment:
Q  326 tatggattgaaatgacaataagtaagtat 354  Q
    |||||||||||||||||||||||||||||    
T  21600586 tatggattgaaatgacaataagtaagtat 21600558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University