View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7035_high_8 (Length: 379)
Name: NF7035_high_8
Description: NF7035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7035_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 41565569 - 41565935
Alignment:
| Q |
1 |
tcaatccaaacaagactccaactagtaagttcaaaggtgtatggctttagacattggggaaggtattctgctgaaaattgtgatccatttgaaaaaacaa |
100 |
Q |
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| T |
41565569 |
tcaatccaaacaagactccaactagtaagttcaaaggtgtatggctt-agacaatggggaaggtattctgctgaaaattgtgatccatttgaaaaaacaa |
41565667 |
T |
|
| Q |
101 |
ggaagtggcttggtaattttgatgatgatatagaagccgctatagcttatagtaagaaaaaggatgagtttgcagaaaggaagtta--gctgaaaatgtt |
198 |
Q |
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| T |
41565668 |
ggaagtggcttggtaattttgatgatgatatagaagctgctatagcttatagtaagaaaaaggatgagtttgcagaaaggaagttatagctgaaaatgtt |
41565767 |
T |
|
| Q |
199 |
ttgaagaatgcttttgatattaatcaatcgtgtaaggaatgtgatggtcgtaataactatgatgatccttctaatgatgatgataacaacaacaatggtg |
298 |
Q |
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| T |
41565768 |
ttgaagaatgcttttgatattaatcaatcgtgtaaggaatgtgatggtcgtaataactatgatgatccttctaatgatgatgataacaacaacaatggtg |
41565867 |
T |
|
| Q |
299 |
gtggtggctcaaatcagatgaaattaggtgttcatggatcattgttcttgaatgtggcttgaaggtcc |
366 |
Q |
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| T |
41565868 |
gtggtggctcaaatcagatgaaattaggtgttcatggatcattgttcttgaatgtggcttgaatgtcc |
41565935 |
T |
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