View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7035_low_1 (Length: 746)
Name: NF7035_low_1
Description: NF7035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7035_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 698; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 698; E-Value: 0
Query Start/End: Original strand, 1 - 730
Target Start/End: Complemental strand, 38180850 - 38180121
Alignment:
| Q |
1 |
ttgtataaaaacacttggcttatgctatccatccatatacatgcataaccgttgcatatcacacttcctttactctactggttcgtgctattgcattttc |
100 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180850 |
ttgtataaaaacacttagcttatgctatccatccatatacattcataaccgttgcatatcacacttcctttactctactggttcgtgctattgcattttc |
38180751 |
T |
|
| Q |
101 |
acaagccaccactaccatggcgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgctctccaattcgccaagcgtctc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38180750 |
acaagccaccactaccatggcgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgctctccaattcgccaaacgtctc |
38180651 |
T |
|
| Q |
201 |
atttctttgggcgcacaagtcacttttgctaccactatctacttacacactcgccttaccaacaaatcaaccatcccgggcctttccttcgccaccttct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38180650 |
atttctttgggcgcacaagtcacttttgctaccactatctacttacacactcgccttaccaacaaatcaaccatctcgggcctttccttcgccaccttct |
38180551 |
T |
|
| Q |
301 |
ctgacggccacgacgatggcccaaaattcgaaagcaacgaagactttgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180550 |
ctgacggccacgacgatggcccaaaattcgaaagcaacgaagactttgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatat |
38180451 |
T |
|
| Q |
401 |
catactctccggcaaacaggaaggtcgtccattcacttgcttagcctacggtatcatcattccttgggtcgcaaaggtggcacgtgagcttcacctccca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38180450 |
catactctccggcaaacaggaaggtcgtccattcacttgcttagcctacggtatcatcattccttgggtcgcaaaggtggcacgtgagcttcacctccca |
38180351 |
T |
|
| Q |
501 |
tcagcgctattatggattcaagctgcaacggtttttgatatctactattattactttcatgagcatggtgactacatcacaaacaaatcaaaggatgaaa |
600 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
38180350 |
tcagcgctattatggattcaagctgcaacagtttttgatatctactattattactttcatgagcatggtgactacgtcacaaacaaatcaaaggatgaaa |
38180251 |
T |
|
| Q |
601 |
catgttcaatatcattaccaggattgtcattctctcttgaaagtcgtgaccttccctcttttttattatcttcaaatatatacactatcgctactcaatc |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180250 |
catgttcaatatcattaccaggattgtcattctctcttgaaagccgtgaccttccctcttttttattatcttcaaatatatacactatcgctactcaatc |
38180151 |
T |
|
| Q |
701 |
tttcaaagaacaaattcaagttctagatga |
730 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
38180150 |
tttcaaagaacaaattcaagttctatatga |
38180121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 85 - 730
Target Start/End: Complemental strand, 38185435 - 38184790
Alignment:
| Q |
85 |
gtgctattgcattttcacaagccaccactaccatggcgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgctctcca |
184 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
38185435 |
gtgctattgcattttcacaagccaccattaccatggcgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgcactcca |
38185336 |
T |
|
| Q |
185 |
attcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcgccttaccaacaaatcaaccatcccgggcctt |
284 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| |||||||||| ||||| |
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|
| T |
38185335 |
attcgccaagcgtctcatttctttcggcgcacaagtcacttttgctacaactatctacttacacactggccttatcaacaaaccaaccatcccaggcctc |
38185236 |
T |
|
| Q |
285 |
tccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacgaagactttgtcacctacgagtatgagcttaagcgccgctgctcgg |
384 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| || ||| |||||||||||||||||||| || ||||| || ||||||||| ||| |||||| | |
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| T |
38185235 |
tccttcgccaccttctctgatggctacgacgacggtaaaaatttcgaaagcaacgaagacttcatcgcctacaggtccgagcttaagtgccactgctcag |
38185136 |
T |
|
| Q |
385 |
aatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttgcttagcctacggtatcatcattccttgggtcgcaaaggtggcacg |
484 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38185135 |
aatttctaacaaatatcatactctccggcaaacaggaaggtcgtccattcacttgcttagcctacggtatcatcattccttgggtcgcaaaggtggcacg |
38185036 |
T |
|
| Q |
485 |
tgagcttcacctcccatcagcgctattatggattcaagctgcaacggtttttgatatctactattattactttcatgagcatggtgactacatcacaaac |
584 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38185035 |
tgagcttcacctcccatcagcgctattatggattcaagctgcaacggtttttgatatctactattattactttcatgaacatggtgactacatcacaaac |
38184936 |
T |
|
| Q |
585 |
aaatcaaaggatgaaacatgttcaatatcattaccaggattgtcattctctcttgaaagtcgtgaccttccctcttttttattatcttcaaatatataca |
684 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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|
| T |
38184935 |
aaatcaaaggatgaaacatgttcaatatcattaccaggattgtcattctctcttgaaagccgtgaccttccctcttttttattatcttcaaatatatata |
38184836 |
T |
|
| Q |
685 |
ctatcgctactcaatctttcaaagaacaaattcaagttctagatga |
730 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38184835 |
ctatcgctactcgatctttcaaagaacaaattcaagttctagatga |
38184790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 90 - 718
Target Start/End: Complemental strand, 38170947 - 38170319
Alignment:
| Q |
90 |
attgcattttcacaagccaccactaccatggcgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgctctccaattcg |
189 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
38170947 |
attgcattttcacaatccaccactaccatggcgcaaaaccaccacttcctcatcataacatacccactacaaggtcacataaaccctgccctccaattca |
38170848 |
T |
|
| Q |
190 |
ccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcgccttaccaacaaatcaaccatcccgggcctttcctt |
289 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| |||||||| ||||||| |||||||||||||||| ||||| |
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|
| T |
38170847 |
ccaagcgtctcatttctttgggcgcaaaagtcacttttgctaccactatccacttatacagtcgccttatcaacaaaccaaccatcccgggcctctcctt |
38170748 |
T |
|
| Q |
290 |
cgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacgaagactttgtcacctacgagtatgagcttaagcgccgctgctcggaattt |
389 |
Q |
| |
|
||||||||||||||||||| | ||||| || | ||||| | || |||||||| | ||| ||||| || |||| ||| ||| ||| |||| |||||| |
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|
| T |
38170747 |
cgccaccttctctgacggctatgacgacggtcaaaaatcctttggcgacgaagacatcgtctcctacatgtctgagtttacgcgtcgcggctcagaattt |
38170648 |
T |
|
| Q |
390 |
ctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttgcttagcctacggtatcatcattccttgggtcgcaaaggtggcacgtgagc |
489 |
Q |
| |
|
|||||||||||||| |||||| |||||| ||| || |||||||||||||||| |||| | |||| || | |||| | |||||||||| ||||| |
|
|
| T |
38170647 |
ctcacaaatatcattctctcctccaaacaagaaaatcatccattcacttgcttaatctacactctcatactttcatgggctcccaaggtggcacatgagc |
38170548 |
T |
|
| Q |
490 |
ttcacctcccatcagcgctattatggattcaagctgcaacggtttttgatatctactattattactttcatgagcatggtgactacatcacaaacaaatc |
589 |
Q |
| |
|
|||||||||||||| | || || ||||||||||| |||||||| |||||||| | |||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
38170547 |
ttcacctcccatcaacactgttgtggattcaagcagcaacggtgtttgatatattctattattactttcatgaacacggtgactacatcacaaacaaatc |
38170448 |
T |
|
| Q |
590 |
aaaggatgaaacatgttcaatatcattaccaggattgtcattctctcttgaaagtcgtgaccttccctcttttttattatcttcaaatatatacactatc |
689 |
Q |
| |
|
|||||||||||| |||| |||||||||||| |||||||||||||||||| |||| || |||||||||||||||||||| ||||||||| ||||||| | |
|
|
| T |
38170447 |
aaaggatgaaacgtgtttaatatcattaccgggattgtcattctctcttaaaagccgcgaccttccctcttttttattggcttcaaatacatacactttt |
38170348 |
T |
|
| Q |
690 |
gctactcaatctttcaaagaacaaattca |
718 |
Q |
| |
|
||| || |||| ||||||| |||||||| |
|
|
| T |
38170347 |
gctcttccatctctcaaagagcaaattca |
38170319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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