View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7035_low_11 (Length: 350)
Name: NF7035_low_11
Description: NF7035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7035_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 334
Target Start/End: Complemental strand, 34866830 - 34866509
Alignment:
| Q |
13 |
aatatattaatatggtcagagtagagcttataagggggtggatatccttcacattactaactgattttgtagggttgagttagagccaatccaaatttta |
112 |
Q |
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| T |
34866830 |
aatatattaatatggtcagagtagagcttataagggggtggatatccttcacattactaactgattttgtagggttgagttagagccaatccaaatttta |
34866731 |
T |
|
| Q |
113 |
agacagcttttaaacatgttataagctatttttataagttctgtcatgttctgaacacttcgacaagggcttatgtcatcaggtaaattcaaataagttg |
212 |
Q |
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| T |
34866730 |
agacagcttttaaacatgttataagctatttttataagttctgtcatgttctgaacacttcgacaagggcttatgtcatcaggtaaattcaaataagttg |
34866631 |
T |
|
| Q |
213 |
taaataagctcttccaaacactcccttaattcaatttataggtggcttatttattaatgcaagtaaataagtaaaatattgacaggaacttgggtatttt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866630 |
taaataagctcttccaaacactcccttaattcaatttataggtggcttatttattaatgcaagtaaataagtaaaatattgacaggaacttgggtatttt |
34866531 |
T |
|
| Q |
313 |
gggagggcctaagtctagcatc |
334 |
Q |
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| T |
34866530 |
gggagggcctaagtctagcatc |
34866509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 51857227 - 51857530
Alignment:
| Q |
14 |
atatattaatatggtcagagtagagcttataagggggtggatatccttcacattactaactgattttgtagggttgagttagagccaatccaaattttaa |
113 |
Q |
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| T |
51857227 |
atatagtaatatggccaaagtag-gcttagaaggtggtcgatatccttcactttacaaattgattttgtagggttgagttagagccaatccaaattttaa |
51857325 |
T |
|
| Q |
114 |
gacagcttttaaacatgttataagctatttttataagttctgtcatgttctgaacacttcgacaagggcttatgtcatcaggtaaattcaaataagttgt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| | |||||||||||||||||||| ||||||| |
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| T |
51857326 |
gacagcttttaaacatgttataagctatttttataagttctgtcatgttccaaacacttcgacaggggcatgtgtcatcaggtaaattcaaaaaagttgt |
51857425 |
T |
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| Q |
214 |
aaataagctcttccaaacactcccttaattcaatttataggtggcttatttattaatgcaagtaaataagtaaaatattgacaggaacttgggtattttg |
313 |
Q |
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| |||| ||||||||||||||||||||| | ||||||| |||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| |
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| T |
51857426 |
tagtaagatcttccaaacactcccttaatactatttatatgtggcttatttattaatgcaagtagatgagtaaaatattgacagggacttgggtattttg |
51857525 |
T |
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| Q |
314 |
ggagg |
318 |
Q |
| |
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||||| |
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| T |
51857526 |
ggagg |
51857530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 11171515 - 11171478
Alignment:
| Q |
196 |
taaattcaaataagttgtaaataagctcttccaaacac |
233 |
Q |
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| T |
11171515 |
taaattcaaataagttgtaaataaactcttccaaacac |
11171478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 37579956 - 37579900
Alignment:
| Q |
53 |
gatatccttcacattactaactgattttgtagggttgagttagagccaatccaaatt |
109 |
Q |
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|||||| ||||| |||| | |||||||||||||||||||||||| | |||| ||||| |
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| T |
37579956 |
gatatctttcaccttacaagctgattttgtagggttgagttagaccaaatctaaatt |
37579900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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