View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7035_low_13 (Length: 296)

Name: NF7035_low_13
Description: NF7035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7035_low_13
NF7035_low_13
[»] chr5 (1 HSPs)
chr5 (19-280)||(9605471-9605732)
[»] chr8 (15 HSPs)
chr8 (35-185)||(6450432-6450582)
chr8 (35-185)||(6456694-6456844)
chr8 (105-185)||(6288453-6288533)
chr8 (106-185)||(6390672-6390751)
chr8 (106-185)||(7458765-7458844)
chr8 (111-185)||(6331588-6331662)
chr8 (106-185)||(6351942-6352021)
chr8 (106-185)||(6369723-6369802)
chr8 (105-185)||(6274203-6274283)
chr8 (106-185)||(6262887-6262966)
chr8 (106-185)||(6362875-6362954)
chr8 (106-185)||(7471167-7471246)
chr8 (106-164)||(6409877-6409935)
chr8 (111-185)||(6321081-6321155)
chr8 (126-185)||(6423806-6423865)
[»] chr2 (2 HSPs)
chr2 (106-186)||(42689002-42689082)
chr2 (130-186)||(42692847-42692903)
[»] chr1 (1 HSPs)
chr1 (105-185)||(36925631-36925711)


Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 9605732 - 9605471
Alignment:
Q  19 tcctcgatgattccatcagcattaattagagcatttcgcgcaagtccgttgatatttattgtgtcgcggaaatggggatctagcaacttattaatagggt 118  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9605732 tcctcgattattccatcagcattaattagagcatttcgagcaagtccgttgatatttattgtgtcacggaaatggggatctagcaacttattaatagggt 9605633  T
Q  119 gaagcacactaagatgtctgtttgttgctatgatgaatggctcaaccactgcatgagtattcaacctagtac--ac-aatgnnnnnnngtattatacaat 215  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || | |        ||||||||| ||    
T  9605632 gaagaacactaagatgtctgtttgttgctatgatgaatggctcaaccactgcatgagtattcaacctagtacgtacgagttgaaaaaagtattatac-at 9605534  T
Q  216 tgcataaatactaaacttattactcacttcgtcccacaaaaaccgtcatattaggtcatttcaca 280  Q
    ||| |  |||||||||||| |||||| ||||| ||||||||||||| ||| ||||||||||||||    
T  9605533 tgctt--atactaaacttaatactcatttcgttccacaaaaaccgttatactaggtcatttcaca 9605471  T

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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 35 - 185
Target Start/End: Original strand, 6450432 - 6450582
Alignment:
Q  35 cagcattaattagagcatttcgcgcaagtccgttgatatttattgtgtcgcggaaatggggatctagcaacttattaatagggtgaagcacactaagatg 134  Q
    ||||||| |||||||| | ||| |||||||| ||||||||||||||||| ||| |||||||   ||  | ||||||||| |||||||| ||||| |||||    
T  6450432 cagcattgattagagcttgtcgagcaagtccattgatatttattgtgtcacggtaatgggggaataaaagcttattaatcgggtgaagtacacttagatg 6450531  T
Q  135 tctgtttgttgctatgatgaatggctcaaccactgcatgagtattcaacct 185  Q
    ||| |||||||||||||||||||| || | |||||||||||||||||||||    
T  6450532 tctatttgttgctatgatgaatggttccatcactgcatgagtattcaacct 6450582  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 35 - 185
Target Start/End: Original strand, 6456694 - 6456844
Alignment:
Q  35 cagcattaattagagcatttcgcgcaagtccgttgatatttattgtgtcgcggaaatggggatctagcaacttattaatagggtgaagcacactaagatg 134  Q
    ||||||| |||||||  | ||| |||||||| ||||||||||||||||| |||||||| |||  ||  |  |||||||| |||||||| ||||| |||||    
T  6456694 cagcattgattagagattgtcgagcaagtccattgatatttattgtgtcacggaaatgaggaaataaaagtttattaattgggtgaagaacacttagatg 6456793  T
Q  135 tctgtttgttgctatgatgaatggctcaaccactgcatgagtattcaacct 185  Q
     || |||||||||||||||||||| ||||| ||||||||||||||||||||    
T  6456794 cctatttgttgctatgatgaatggttcaacaactgcatgagtattcaacct 6456844  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 6288453 - 6288533
Alignment:
Q  105 cttattaatagggtgaagcacactaagatgtctgtttgttgctatgatgaatggctcaaccactgcatgagtattcaacct 185  Q
    ||||| |||||| |||| |||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||    
T  6288453 cttatgaataggatgaaccacactaagatgcctatttgttgctatgatgaatggctcaacaactgcatgagtattcaacct 6288533  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 6390672 - 6390751
Alignment:
Q  106 ttattaatagggtgaagcacactaagatgtctgtttgttgctatgatgaatggctcaaccactgcatgagtattcaacct 185  Q
    |||| ||||||||||| |||||||||||| || |||||||||||||||||||||||||| || |||||||| ||||||||    
T  6390672 ttatgaatagggtgaaccacactaagatgcctatttgttgctatgatgaatggctcaacaacagcatgagtgttcaacct 6390751  T

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Target: chr8; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 7458765 - 7458844
Alignment:
Q  106 ttattaatagggtgaagcacactaagatgtctgtttgttgctatgatgaatggctcaaccactgcatgagtattcaacct 185  Q
    |||| ||||||||||| |||||||||||| || |||||||||||||||||||||||||| || |||||||| ||||||||    
T  7458765 ttatgaatagggtgaaccacactaagatgcctatttgttgctatgatgaatggctcaacaacggcatgagtgttcaacct 7458844  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 185
Target Start/End: Original strand, 6331588 - 6331662
Alignment:
Q  111 aatagggtgaagcacactaagatgtctgtttgttgctatgatgaatggctcaaccactgcatgagtattcaacct 185  Q
    ||||||||||| |||||||||||| || |||||||||||||||||||||||||| || |||||||| ||||||||    
T  6331588 aatagggtgaaccacactaagatgcctatttgttgctatgatgaatggctcaacaacagcatgagtgttcaacct 6331662  T

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Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 6351942 - 6352021
Alignment:
Q  106 ttattaatagggtgaagcacactaagatgtctgtttgttgctatgatgaatggctcaaccactgcatgagtattcaacct 185  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| || || || || ||||||||    
T  6351942 ttatgaatagggtgaaccacactaagatgcctgtttgttgctatgatgaatggctcaacaacagcgtgggtgttcaacct 6352021  T

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Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 6369723 - 6369802
Alignment:
Q  106 ttattaatagggtgaagcacactaagatgtctgtttgttgctatgatgaatggctcaaccactgcatgagtattcaacct 185  Q
    |||| |||||||||||||||||||||||| || ||||||||||||| |||||||||||| || ||||| || ||||||||    
T  6369723 ttatgaatagggtgaagcacactaagatgcctatttgttgctatgacgaatggctcaacaacagcatgtgttttcaacct 6369802  T

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Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 6274203 - 6274283
Alignment:
Q  105 cttattaatagggtgaagcacactaagatgtctgtttgttgctatgatgaatggctcaaccactgcatgagtattcaacct 185  Q
    ||||| |||||| |||| |||||||||||| || |||||||||||||||||||||||||| || |||||||| || |||||    
T  6274203 cttatgaataggatgaaccacactaagatgcctatttgttgctatgatgaatggctcaacaacagcatgagtgtttaacct 6274283  T

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Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 6262887 - 6262966
Alignment:
Q  106 ttattaatagggtgaagcacactaagatgtctgtttgttgctatgatgaatggctcaaccactgcatgagtattcaacct 185  Q
    |||| |||||| |||||||||||||| ||||||||||||||||| |  ||||| ||||| |||||||||||||| |||||    
T  6262887 ttataaataggatgaagcacactaagttgtctgtttgttgctataacaaatggttcaacaactgcatgagtatttaacct 6262966  T

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Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 6362875 - 6362954
Alignment:
Q  106 ttattaatagggtgaagcacactaagatgtctgtttgttgctatgatgaatggctcaaccactgcatgagtattcaacct 185  Q
    |||| ||||||||||| |||||| ||||| || ||||||||||||| |||||||||||| || |||||||| ||||||||    
T  6362875 ttatgaatagggtgaaccacacttagatgcctatttgttgctatgacgaatggctcaactacagcatgagtgttcaacct 6362954  T

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Target: chr8; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 7471167 - 7471246
Alignment:
Q  106 ttattaatagggtgaagcacactaagatgtctgtttgttgctatgatgaatggctcaaccactgcatgagtattcaacct 185  Q
    |||| |||| |||||| |||||||||||| || |||||||||||||||||||||||||| || || ||||| ||||||||    
T  7471167 ttatgaatatggtgaaccacactaagatgcctatttgttgctatgatgaatggctcaacaacggcgtgagtgttcaacct 7471246  T

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Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 6409877 - 6409935
Alignment:
Q  106 ttattaatagggtgaagcacactaagatgtctgtttgttgctatgatgaatggctcaac 164  Q
    |||| ||||||||||| |||||||||||| || ||||||||||||||||||||||||||    
T  6409877 ttatgaatagggtgaaccacactaagatgcctatttgttgctatgatgaatggctcaac 6409935  T

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Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 185
Target Start/End: Original strand, 6321081 - 6321155
Alignment:
Q  111 aatagggtgaagcacactaagatgtctgtttgttgctatgatgaatggctcaaccactgcatgagtattcaacct 185  Q
    ||||||||||| |||||||||||| || || ||||||||||||||||||||||| || || || || ||||||||    
T  6321081 aatagggtgaaccacactaagatgcctattagttgctatgatgaatggctcaacaacagcgtgcgtgttcaacct 6321155  T

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Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 6423806 - 6423865
Alignment:
Q  126 actaagatgtctgtttgttgctatgatgaatggctcaaccactgcatgagtattcaacct 185  Q
    |||||| ||||||||||||||||||||||| |||||||| || || ||||| ||||||||    
T  6423806 actaaggtgtctgtttgttgctatgatgaacggctcaacaacagcgtgagtgttcaacct 6423865  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 42689082 - 42689002
Alignment:
Q  106 ttattaatagggtgaagcacactaagatgtctgtttgttgctatgatgaatggctcaaccactgcatgagtattcaaccta 186  Q
    |||| ||| ||||||| ||||||||| ||||  |||||||| || | |||||||||||| |||||||| ||||||||||||    
T  42689082 ttataaattgggtgaatcacactaagctgtcgatttgttgcaataacgaatggctcaactactgcatgggtattcaaccta 42689002  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 42692847 - 42692903
Alignment:
Q  130 agatgtctgtttgttgctatgatgaatggctcaaccactgcatgagtattcaaccta 186  Q
    ||||| ||||| ||||||||||  ||||| ||||| |||||||||||||| ||||||    
T  42692847 agatgcctgttagttgctatgacaaatggttcaacaactgcatgagtatttaaccta 42692903  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 36925711 - 36925631
Alignment:
Q  105 cttattaatagggtgaagcacactaagatgtctgtttgttgctatgatgaatggctcaaccactgcatgagtattcaacct 185  Q
    ||||| |||||||||||| ||||||||| | || ||||  ||||||||||||||||| || || |||||||||| ||||||    
T  36925711 cttatgaatagggtgaagtacactaagacgcctatttgaagctatgatgaatggctctacgacggcatgagtatgcaacct 36925631  T

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