View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7035_low_17 (Length: 264)
Name: NF7035_low_17
Description: NF7035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7035_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 7555393 - 7555591
Alignment:
| Q |
20 |
ggggacctgggttggccatggtccccccactttttctnnnnnnntaattatattactagtatacaattctatttttacatattcaagaatatgttccccc |
119 |
Q |
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| T |
7555393 |
ggggacctgggt-ggccatggtccccccactttttctaaaaaaataattatattactagtatacaattctatttttacatagtcaagaatatgttccccc |
7555491 |
T |
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| Q |
120 |
cttaatattgtttcttcttcttgttccctgttacttacctataggtgcaagtcatcatctgcatgttagcttaactctctctttctttctttatttaatc |
219 |
Q |
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| T |
7555492 |
cttaatattgtttcttcttcctgttccctgttacttacctataggtgcaagtcatcatctgaatgttagcttaactctctatttctttctttatttaatc |
7555591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 7555590 - 7555627
Alignment:
| Q |
207 |
tctttatttaatccttactattagactaatctgattgt |
244 |
Q |
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| T |
7555590 |
tctttatttaatccttactattagactaatctgattgt |
7555627 |
T |
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