View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7035_low_2 (Length: 655)
Name: NF7035_low_2
Description: NF7035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7035_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 24 - 618
Target Start/End: Complemental strand, 52577775 - 52577183
Alignment:
| Q |
24 |
cgtctagcacatcaaatcaaagcatttttataaaaacaatgtttccaagacttaacagcaacatatatatagtgcagggaaccacatttgtgctgcagaa |
123 |
Q |
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| T |
52577775 |
cgtctagcacatcaaatcaaagcatttttataaaaacaatgtttccaagacttaacagcaacatatatatagtgcagggaaccacatttgtgctgcagaa |
52577676 |
T |
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| Q |
124 |
gcaaactgaacccagacaaaagttattaacagcaatttcatcgggggtgggtgttggagaggtaagggtgctcnnnnnnnnctctataaacataactgga |
223 |
Q |
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| T |
52577675 |
gcaaactgaacccagacaaaagttattaacagcaatttcatcgggggtgggtgttcgagaggtaagggtgctcttttttt--tcaataaacataactgga |
52577578 |
T |
|
| Q |
224 |
atatttccaatgtcactatttttcacatccttaattccaacaggcaatagataaactcatttccttaaataagaattctggggaagaagatccagaacta |
323 |
Q |
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| T |
52577577 |
atatttccaatgtcactatttttcacatccttaattccaacaggcaatagataaactcatttccttaaataagaattctggggaagaagatccagaacta |
52577478 |
T |
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| Q |
324 |
gaagagggcgaatggcagatgatatggaattcacaggtagattttgaaatacaaacgaagagttccaactgataattttgtttttctcatttgaaattaa |
423 |
Q |
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| T |
52577477 |
gaagagggcgaatggcagatgatatggaattcacaggtagattttgaaatacaaacgaagagttccaactgataattttgtttttctcatttgaaattaa |
52577378 |
T |
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| Q |
424 |
nnnnnnnagggagtactgtttgaagatgatttaaatgtaaacaattatcttacaaggttttatttttcgtatgtaaacaacttattctctacagactgtg |
523 |
Q |
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| T |
52577377 |
tttttttaaggagtactgtttgaagatgatttaaatgtaaacaattatcttactaggttttatttttggtatgtaaacaacttattctctacagactgtg |
52577278 |
T |
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| Q |
524 |
actgatagttggttagagaatgctgccaatggtctgatgggaaagcaggtatcaagttcatcttgtgcatttaatttaattgccacaggttctgc |
618 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
52577277 |
acggatagttggttagagaatgctgccaatggtctgatgggaaagcaggtatcaagttcatcttgtgcatgtaatttaattgccacaagttctgc |
52577183 |
T |
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