View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7035_low_20 (Length: 249)
Name: NF7035_low_20
Description: NF7035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7035_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 18)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 111 - 224
Target Start/End: Original strand, 30024722 - 30024835
Alignment:
| Q |
111 |
ttgaatctgattacttgtatttcatagtttgtcccaaacacaaaggagcttattctgaacagcaaggatgtcaccatgttatgccatggtcaacttgatg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||| |
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| T |
30024722 |
ttgaatctgattacttgtatttcatagtttgtccccaacacaagggagcttattctgaacagaaaggatgtcaccatgttatgcaatggtcaacttaatg |
30024821 |
T |
|
| Q |
211 |
atgagcttatctac |
224 |
Q |
| |
|
|||||||||||||| |
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|
| T |
30024822 |
atgagcttatctac |
30024835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 111 - 224
Target Start/End: Complemental strand, 30117400 - 30117287
Alignment:
| Q |
111 |
ttgaatctgattacttgtatttcatagtttgtcccaaacacaaaggagcttattctgaacagcaaggatgtcaccatgttatgccatggtcaacttgatg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||| |
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| T |
30117400 |
ttgaatctgattacttgtatttcatagtttgtccccaacacaagggagcttattctgaacagaaaggatgtcaccatgttatgcaatggtcaacttaatg |
30117301 |
T |
|
| Q |
211 |
atgagcttatctac |
224 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30117300 |
atgagcttatctac |
30117287 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 111 - 224
Target Start/End: Complemental strand, 30132157 - 30132044
Alignment:
| Q |
111 |
ttgaatctgattacttgtatttcatagtttgtcccaaacacaaaggagcttattctgaacagcaaggatgtcaccatgttatgccatggtcaacttgatg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||| |
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|
| T |
30132157 |
ttgaatctgattacttgtatttcatagtttgtccccaacacaagggagcttattctgaacagaaaggatgtcaccatgttatgcaatggtcaacttaatg |
30132058 |
T |
|
| Q |
211 |
atgagcttatctac |
224 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30132057 |
atgagcttatctac |
30132044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 111 - 224
Target Start/End: Complemental strand, 30237406 - 30237293
Alignment:
| Q |
111 |
ttgaatctgattacttgtatttcatagtttgtcccaaacacaaaggagcttattctgaacagcaaggatgtcaccatgttatgccatggtcaacttgatg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||| |
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|
| T |
30237406 |
ttgaatctgattacttgtatttcatagtttgtccccaacacaagggagcttattctgaacagaaaggatgtcaccatgttatgcaatggtcaacttaatg |
30237307 |
T |
|
| Q |
211 |
atgagcttatctac |
224 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30237306 |
atgagcttatctac |
30237293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 111 - 224
Target Start/End: Complemental strand, 30035975 - 30035862
Alignment:
| Q |
111 |
ttgaatctgattacttgtatttcatagtttgtcccaaacacaaaggagcttattctgaacagcaaggatgtcaccatgttatgccatggtcaacttgatg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||| |
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|
| T |
30035975 |
ttgaatctgattacttgtatttcatagtttgtccccaacacaagggagcttattctgaacagaaaggatgtcaccatgttatgcaatggtcaacttaatg |
30035876 |
T |
|
| Q |
211 |
atgagcttatctac |
224 |
Q |
| |
|
||||||||||||| |
|
|
| T |
30035875 |
gtgagcttatctac |
30035862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 111 - 224
Target Start/End: Complemental strand, 30230113 - 30230000
Alignment:
| Q |
111 |
ttgaatctgattacttgtatttcatagtttgtcccaaacacaaaggagcttattctgaacagcaaggatgtcaccatgttatgccatggtcaacttgatg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||| |
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|
| T |
30230113 |
ttgaatctgattacttgtatttcatagtttgtccccaacacaagggagcttattctgaacagaaaggatgtcaccatgttatgcaatggtcaacttaatg |
30230014 |
T |
|
| Q |
211 |
atgagcttatctac |
224 |
Q |
| |
|
||||||||||||| |
|
|
| T |
30230013 |
gtgagcttatctac |
30230000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 221
Target Start/End: Complemental strand, 30182533 - 30182418
Alignment:
| Q |
106 |
ttcgtttgaatctgattacttgtatttcatagtttgtcccaaacacaaaggagcttattctgaacagcaaggatgtcaccatgttatgccatggtcaact |
205 |
Q |
| |
|
|||| |||||| ||| ||||||| |||||||| |||||| ||||| | |||||||||||||||||||||||||||||||||| |||| ||||||| || |
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|
| T |
30182533 |
ttcgcttgaatttgaatacttgtgtttcatagattgtccaaaacaaaggggagcttattctgaacagcaaggatgtcaccatggcatgcaatggtcacct |
30182434 |
T |
|
| Q |
206 |
tgatgatgagcttatc |
221 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
30182433 |
taatgatgagcttatc |
30182418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 204
Target Start/End: Original strand, 30253734 - 30253836
Alignment:
| Q |
102 |
gctattcgtttgaatctgattacttgtatttcatagtttgtcccaaacacaaaggagcttattctgaacagcaaggatgtcaccatgttatgccatggtc |
201 |
Q |
| |
|
|||||| | |||||||||||||||||| |||||||| ||||| | ||||||| |||||||||||| ||||| ||||||||||| ||||||||| |||||| |
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|
| T |
30253734 |
gctattagcttgaatctgattacttgtgtttcataggttgtctccaacacaagggagcttattctaaacagtaaggatgtcacaatgttatgcaatggtc |
30253833 |
T |
|
| Q |
202 |
aac |
204 |
Q |
| |
|
||| |
|
|
| T |
30253834 |
aac |
30253836 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 30176607 - 30176698
Alignment:
| Q |
102 |
gctattcgtttgaatctgattacttgtatttcatagtttgtcccaaacacaaaggagcttattctgaacagcaaggatgtcaccatgttatg |
193 |
Q |
| |
|
|||||| | |||||||||||||||||| || | ||| ||||| | ||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30176607 |
gctattagcttgaatctgattacttgtgttacctaggttgtcaccaacacaagggagcttattctgaattgcaaggatgtcaccatgttatg |
30176698 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 30069865 - 30069951
Alignment:
| Q |
134 |
atagtttgtcccaaacacaaaggagcttattctgaacagcaaggatgtcaccatgttatgccatggtcaacttgatgatgagcttat |
220 |
Q |
| |
|
|||| |||||| ||||||| |||||||||||||| | ||||||||||| |||||||| || ||||||||||| ||||||||||||| |
|
|
| T |
30069865 |
ataggttgtccagaacacaagggagcttattctgagctgcaaggatgtctccatgttacgcaatggtcaacttaatgatgagcttat |
30069951 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 30792363 - 30792473
Alignment:
| Q |
114 |
aatctgattacttgtatttcatagtttgtcccaaacacaaaggagcttattctgaacagcaaggatgtcaccatgttatgccatggtcaacttgatgatg |
213 |
Q |
| |
|
|||||||||| |||| |||||||| || || | | | ||| ||||||||||||||| ||||||| ||||||||||||||| | ||||||||| |||||| |
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|
| T |
30792363 |
aatctgattaattgtgtttcatagattttcaccaccgcaagggagcttattctgaattgcaaggacgtcaccatgttatgcaacggtcaacttaatgatg |
30792462 |
T |
|
| Q |
214 |
agcttatctac |
224 |
Q |
| |
|
|||| |||||| |
|
|
| T |
30792463 |
agctgatctac |
30792473 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 30237597 - 30237556
Alignment:
| Q |
35 |
ttctacatctcaatactctgccaataaatggcagaagtactt |
76 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30237597 |
ttctacatctcaatactctgccaataaatggcagaaatactt |
30237556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 30281358 - 30281427
Alignment:
| Q |
155 |
ggagcttattctgaacagcaaggatgtcaccatgttatgccatggtcaacttgatgatgagcttatctac |
224 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||| ||||| |||||| || ||||||| |
|
|
| T |
30281358 |
ggagcttattctgaattgcaaggatgtcaccatgttatgcagcggtgaacttaatgatgggcctatctac |
30281427 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 30024531 - 30024572
Alignment:
| Q |
35 |
ttctacatctcaatactctgccaataaatggcagaagtactt |
76 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| ||||| |
|
|
| T |
30024531 |
ttctacatatcaatactctgccaataaatgtcagaaatactt |
30024572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 30036166 - 30036125
Alignment:
| Q |
35 |
ttctacatctcaatactctgccaataaatggcagaagtactt |
76 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| ||||| |
|
|
| T |
30036166 |
ttctacatatcaatactctgccaataaatgtcagaaatactt |
30036125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 30117591 - 30117550
Alignment:
| Q |
35 |
ttctacatctcaatactctgccaataaatggcagaagtactt |
76 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| ||||| |
|
|
| T |
30117591 |
ttctacatatcaatactctgccaataaatgtcagaaatactt |
30117550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 30132348 - 30132307
Alignment:
| Q |
35 |
ttctacatctcaatactctgccaataaatggcagaagtactt |
76 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| ||||| |
|
|
| T |
30132348 |
ttctacatatcaatactctgccaataaatgtcagaaatactt |
30132307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 30230304 - 30230263
Alignment:
| Q |
35 |
ttctacatctcaatactctgccaataaatggcagaagtactt |
76 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| ||||| |
|
|
| T |
30230304 |
ttctacatatcaatactctgccaataaatgtcagaaatactt |
30230263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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