View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7035_low_3 (Length: 504)
Name: NF7035_low_3
Description: NF7035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7035_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 23 - 486
Target Start/End: Original strand, 3239638 - 3240101
Alignment:
| Q |
23 |
tgtgttaagggactgtcctaaagccatcgcattatggattagtgtagtgcataatggcgctagaaatgannnnnnngagggggatctgttgcattggatt |
122 |
Q |
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| T |
3239638 |
tgtgttaagggactgtcctaaagccatggcattatggatcagtgtagtgcataatggcgctagaaatgattcttttgagtgggatctgttgcattggatt |
3239737 |
T |
|
| Q |
123 |
aattataatatgtacagtaaggtaaattggaaccatgatattgattggaaggacttatgggca-gtccgtcacactttatggaattggaagaacaaggaa |
221 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||| |
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| T |
3239738 |
aattataatatgcacagtaaggtaatttggaaccatgatattgattggaaggacttatgggcaagtccgtcccactttatggaattggaagaataaggaa |
3239837 |
T |
|
| Q |
222 |
aaacatattgataactttaaaaggccattggatgggaaggctgctgtcatgagttatgttaacgcatatcatgctgctgataaagccactaagatcgttc |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3239838 |
aaacatattgataactttaaaaggccattggatgggaaggctgatgtcacgagttatgttaacgcatatcatgttgctgataaagccactaagatcgttc |
3239937 |
T |
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| Q |
322 |
aagaaactccaaaagttatgacaattgtgagctggaagtgccccccggcggggtgggttaaaatcaactccgacggagcacgaaaagaagatagcagagt |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
3239938 |
aagaaactccaaaagttatgacaattgtgagctggaagtgccccccggcggggtgggttaaaatcaactccgacggagcacgaaaagaagatggcatagt |
3240037 |
T |
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| Q |
422 |
gggttgtgggggtatcaaacgggggagtgagggtgaatggcttggcggtttttctaagcatgtcg |
486 |
Q |
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||||||| | ||||||| || ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3240038 |
gggttgttgaggtatcatac-ggggagtgagggtcaatggcttggcggtttttctaagcatgtcg |
3240101 |
T |
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