View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7035_low_34 (Length: 207)

Name: NF7035_low_34
Description: NF7035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7035_low_34
NF7035_low_34
[»] chr4 (20 HSPs)
chr4 (48-188)||(39331133-39331273)
chr4 (92-152)||(7616957-7617017)
chr4 (70-139)||(12922186-12922255)
chr4 (92-185)||(46804987-46805080)
chr4 (92-187)||(971887-971981)
chr4 (99-140)||(25855282-25855323)
chr4 (112-187)||(4161851-4161927)
chr4 (70-152)||(13834513-13834595)
chr4 (111-188)||(27395479-27395557)
chr4 (49-145)||(42375244-42375340)
chr4 (150-186)||(46433550-46433586)
chr4 (92-187)||(48973371-48973467)
chr4 (102-145)||(22467250-22467293)
chr4 (102-141)||(32934155-32934194)
chr4 (118-171)||(35075822-35075876)
chr4 (106-186)||(7912534-7912615)
chr4 (93-142)||(21241804-21241853)
chr4 (50-123)||(26499279-26499352)
chr4 (50-125)||(24806760-24806835)
chr4 (92-140)||(51226123-51226171)
[»] scaffold0687 (1 HSPs)
scaffold0687 (92-187)||(1619-1715)
[»] chr8 (15 HSPs)
chr8 (92-187)||(7603935-7604031)
chr8 (70-152)||(4586770-4586852)
chr8 (92-145)||(40680074-40680127)
chr8 (99-183)||(41616690-41616775)
chr8 (92-151)||(21215940-21215999)
chr8 (102-160)||(29908950-29909009)
chr8 (102-187)||(42844884-42844970)
chr8 (102-152)||(7681014-7681064)
chr8 (50-152)||(8340310-8340411)
chr8 (70-140)||(42660085-42660155)
chr8 (111-144)||(6049172-6049205)
chr8 (111-140)||(35447600-35447629)
chr8 (111-183)||(44362626-44362699)
chr8 (92-152)||(12530791-12530851)
chr8 (92-140)||(18080463-18080511)
[»] chr7 (16 HSPs)
chr7 (94-152)||(8929495-8929553)
chr7 (92-145)||(23441495-23441548)
chr7 (89-156)||(20889211-20889278)
chr7 (102-152)||(46720021-46720071)
chr7 (60-141)||(12849733-12849814)
chr7 (92-141)||(23457830-23457879)
chr7 (92-145)||(23474549-23474602)
chr7 (58-141)||(8062885-8062968)
chr7 (49-128)||(39608609-39608688)
chr7 (102-152)||(10228752-10228802)
chr7 (102-152)||(24127206-24127256)
chr7 (92-145)||(23532887-23532940)
chr7 (111-140)||(29197172-29197201)
chr7 (48-143)||(5429331-5429427)
chr7 (102-134)||(30793161-30793193)
chr7 (98-138)||(43576486-43576526)
[»] chr1 (13 HSPs)
chr1 (51-187)||(33747270-33747407)
chr1 (70-187)||(27900871-27900989)
chr1 (92-142)||(38445183-38445233)
chr1 (92-140)||(29795276-29795324)
chr1 (50-134)||(39162406-39162490)
chr1 (98-145)||(21379283-21379330)
chr1 (99-142)||(31415068-31415111)
chr1 (97-136)||(43115654-43115693)
chr1 (105-140)||(45679559-45679594)
chr1 (102-152)||(51849558-51849608)
chr1 (92-125)||(2262183-2262216)
chr1 (111-152)||(10018969-10019010)
chr1 (101-188)||(45679705-45679793)
[»] chr3 (13 HSPs)
chr3 (102-145)||(47944560-47944603)
chr3 (92-187)||(23195690-23195786)
chr3 (92-156)||(45681387-45681451)
chr3 (49-187)||(14984406-14984544)
chr3 (102-152)||(47944335-47944385)
chr3 (100-145)||(32536464-32536509)
chr3 (50-141)||(30843819-30843910)
chr3 (49-123)||(7672336-7672410)
chr3 (100-150)||(39336789-39336839)
chr3 (150-187)||(20936486-20936523)
chr3 (150-187)||(29079235-29079272)
chr3 (99-152)||(52330622-52330675)
chr3 (100-152)||(22235487-22235539)
[»] chr2 (11 HSPs)
chr2 (50-187)||(40124264-40124402)
chr2 (96-187)||(12676427-12676519)
chr2 (92-152)||(19206506-19206566)
chr2 (111-150)||(6686797-6686836)
chr2 (92-150)||(6788492-6788550)
chr2 (71-141)||(7165761-7165831)
chr2 (111-152)||(20966220-20966261)
chr2 (92-136)||(1517582-1517626)
chr2 (92-136)||(18858011-18858055)
chr2 (92-140)||(18903185-18903233)
chr2 (102-138)||(29488709-29488745)
[»] chr6 (9 HSPs)
chr6 (102-187)||(9307432-9307517)
chr6 (70-145)||(9307250-9307325)
chr6 (95-140)||(31315298-31315343)
chr6 (100-152)||(25085089-25085141)
chr6 (101-140)||(9762629-9762668)
chr6 (93-185)||(4964258-4964351)
chr6 (98-135)||(30000001-30000038)
chr6 (99-152)||(31803956-31804009)
chr6 (96-152)||(28995539-28995595)
[»] scaffold0050 (1 HSPs)
scaffold0050 (104-152)||(81349-81397)
[»] chr5 (14 HSPs)
chr5 (102-185)||(23159081-23159165)
chr5 (92-152)||(42932827-42932887)
chr5 (96-141)||(296546-296591)
chr5 (100-136)||(3599845-3599881)
chr5 (99-138)||(13200852-13200891)
chr5 (70-152)||(8206297-8206379)
chr5 (93-135)||(37269117-37269159)
chr5 (93-125)||(9577097-9577129)
chr5 (106-177)||(14461750-14461822)
chr5 (106-138)||(19342534-19342566)
chr5 (50-138)||(26675287-26675375)
chr5 (50-138)||(26946895-26946983)
chr5 (60-140)||(27001402-27001482)
chr5 (96-152)||(42525231-42525287)


Alignment Details
Target: chr4 (Bit Score: 117; Significance: 8e-60; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 48 - 188
Target Start/End: Complemental strand, 39331273 - 39331133
Alignment:
Q  48 aataataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttg 147  Q
    |||||||||||||||| |||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39331273 aataataatcattttgattcttgaatttgtaataagcagcgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttg 39331174  T
Q  148 tcaaatagttcatgatattaaaatgtttcattaatattgtt 188  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  39331173 tcaaatagtccatgatattaaaatgcttcattaatattgtt 39331133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 7617017 - 7616957
Alignment:
Q  92 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 152  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||| ||| ||||||    
T  7617017 atagtcttttaatgtattaaaattttaaaatagtttttgattttgcactttgttagtcaaa 7616957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 12922186 - 12922255
Alignment:
Q  70 gaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcac 139  Q
    |||||||||||||| ||| || ||||| ||| ||||||| ||||||| ||||||||||||||||||||||    
T  12922186 gaatgtgtaataagtagtcacaatagtatttcaatgtatcgaaatttcaaaatagtttttgattgtgcac 12922255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 185
Target Start/End: Complemental strand, 46805080 - 46804987
Alignment:
Q  92 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa-tagttcatgatattaaaatgtttcattaatatt 185  Q
    ||||||||| ||| |||| |||||||||||| || | ||||||||| ||||||| |||||| |||| | |||||||||||| |||||||||||||    
T  46805080 atagtctttcaatatattaaaattttaaaattgtctctgattgtgc-cttcgttggtcaaaatagtccctgatattaaaatatttcattaatatt 46804987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 971887 - 971981
Alignment:
Q  92 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa-tagttcatgatattaaaatgtttcattaatattgt 187  Q
    |||||| || |||||||  |||||| |||||||| ||||||||||||||| ||| |||||| ||||  ||||||||  |||||||||||||||||||    
T  971887 atagtcattcaatgtatcaaaatttcaaaatagtctttgattgtgcactttgttagtcaaagtagtctatgatatt--aatgtttcattaatattgt 971981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 25855323 - 25855282
Alignment:
Q  99 tttaatgtattgaaattttaaaatagtttttgattgtgcact 140  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  25855323 tttaatgtattgaaattttaaaatagtctttgattgtgcact 25855282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 187
Target Start/End: Complemental strand, 4161927 - 4161851
Alignment:
Q  112 aattttaaaatagtttttgattgtgcacttcgtttgtcaaa-tagttcatgatattaaaatgtttcattaatattgt 187  Q
    ||||||| ||||||| || |||||||| || ||| |||||| ||||  |||||||||||||||||||||||||||||    
T  4161927 aattttacaatagttattaattgtgcattttgttagtcaaaatagtctatgatattaaaatgtttcattaatattgt 4161851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 13834595 - 13834513
Alignment:
Q  70 gaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 152  Q
    ||||||||||| || ||| || | |||||||||||||||| ||||||||||||||| | ||||| | |||||| || ||||||    
T  13834595 gaatgtgtaatgagtagtcacaacagtcttttaatgtattaaaattttaaaatagtctctgattttacacttcattagtcaaa 13834513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 188
Target Start/End: Original strand, 27395479 - 27395557
Alignment:
Q  111 aaattttaaaatagtttttgattgtgcacttcgtttgtc-aaatagttcatgatattaaaatgtttcattaatattgtt 188  Q
    ||||||||||||| | ||||||||| ||||||||| ||| ||||| | | ||||||||||||||| | |||||||||||    
T  27395479 aaattttaaaataatatttgattgttcacttcgttagtcaaaataatccttgatattaaaatgttacgttaatattgtt 27395557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 42375340 - 42375244
Alignment:
Q  49 ataataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtt 145  Q
    |||||| |||||||| || | ||||||||||| || ||  || ||| |  |||||||||| ||||||| ||| |||||||||||| |||||||||||    
T  42375340 ataatagtcattttgattattgaatgtgtaatgagtagccacaataattctttaatgtatcgaaatttcaaagtagtttttgattctgcacttcgtt 42375244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 46433586 - 46433550
Alignment:
Q  150 aaatagttcatgatattaaaatgtttcattaatattg 186  Q
    ||||||||| |||||||||||||||||||||||||||    
T  46433586 aaatagttcctgatattaaaatgtttcattaatattg 46433550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 48973467 - 48973371
Alignment:
Q  92 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa-tagttcatgatattaaaatgtttcattaatattgt 187  Q
    ||||||||| ||||||   |||||| ||||||||  ||||||||||| ||| ||  ||||| |||||| |||| |||||||| ||||||||||||||    
T  48973467 atagtctttcaatgtacaaaaatttcaaaatagtccttgattgtgcaattcattaatcaaaatagttcttgatgttaaaatgcttcattaatattgt 48973371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 145
Target Start/End: Original strand, 22467250 - 22467293
Alignment:
Q  102 aatgtattgaaattttaaaatagtttttgattgtgcacttcgtt 145  Q
    ||||||||||||||| |||||||| ||| |||||||||||||||    
T  22467250 aatgtattgaaatttgaaaatagtctttaattgtgcacttcgtt 22467293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 141
Target Start/End: Complemental strand, 32934194 - 32934155
Alignment:
Q  102 aatgtattgaaattttaaaatagtttttgattgtgcactt 141  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  32934194 aatgtatcaaaattttaaaatagtttttgattgtgcactt 32934155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 35075876 - 35075822
Alignment:
Q  118 aaaatagtttttgattgtgcacttcgtttgtcaaa-tagttcatgatattaaaat 171  Q
    |||||| || |||||||||||||||||| |||||| |||||||||| ||||||||    
T  35075876 aaaataattcttgattgtgcacttcgttagtcaaactagttcatgacattaaaat 35075822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 7912534 - 7912615
Alignment:
Q  106 tattgaaattttaaaatagtttttgattgtgcacttcgtttgtc-aaatagttcatgatattaaaatgtttcattaatattg 186  Q
    |||||||||||| ||||||| | | ||||||||||||  | ||| ||||||| | | ||||||||||| |||||||||||||    
T  7912534 tattgaaattttgaaatagtctctaattgtgcacttcactagtcaaaatagtccctcatattaaaatgcttcattaatattg 7912615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 21241853 - 21241804
Alignment:
Q  93 tagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttc 142  Q
    ||||| ||| ||||||  |||||||||||||||||| |||||||||||||    
T  21241853 tagtcctttgatgtatcaaaattttaaaatagttttcgattgtgcacttc 21241804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 26499279 - 26499352
Alignment:
Q  50 taataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaata 123  Q
    ||||| ||||||||||||  |||||||||| ||| ||| || ||| ||| |||||||||| ||||| |||||||    
T  26499279 taatagtcattttggttcctgaatgtgtaaaaagtagtcacaataatctcttaatgtattaaaattctaaaata 26499352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 24806835 - 24806760
Alignment:
Q  50 taataatcattttggt-tctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagt 125  Q
    ||||| |||||||||| ||| ||||| |||||||| ||| || ||||||  ||||||||||||||||| ||||||||    
T  24806835 taatagtcattttggtatct-gaatgcgtaataagtagttacaatagtcccttaatgtattgaaatttgaaaatagt 24806760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 51226171 - 51226123
Alignment:
Q  92 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcact 140  Q
    ||||||||| ||||||| |||||| |||||| ||| |||||||||||||    
T  51226171 atagtctttcaatgtatcgaaattctaaaattgttcttgattgtgcact 51226123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 1619 - 1715
Alignment:
Q  92 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtc-aaatagttcatgatattaaaatgtttcattaatattgt 187  Q
    ||||||||| |||||||  ||||||||||||| ||||||||||||||||||||| ||| |||||||   | ||||| |||||| |||||||||||||    
T  1619 atagtctttcaatgtatcaaaattttaaaataatttttgattgtgcacttcgttggtcaaaatagtctctaatattgaaatgtctcattaatattgt 1715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 7603935 - 7604031
Alignment:
Q  92 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtc-aaatagttcatgatattaaaatgtttcattaatattgt 187  Q
    ||||||||| |||||||  ||||||||||||| ||||||||||||||||||||| ||| |||||||   | ||||| |||||| |||||||||||||    
T  7603935 atagtctttcaatgtatcaaaattttaaaataatttttgattgtgcacttcgttggtcaaaatagtctctaatattgaaatgtctcattaatattgt 7604031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 4586770 - 4586852
Alignment:
Q  70 gaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 152  Q
    ||||||||||  || ||| || ||||||| |||||||||| ||||||||||||||| | ||||| ||||||||||| ||||||    
T  4586770 gaatgtgtaacgagtagttacaatagtctcttaatgtattaaaattttaaaatagtctatgattttgcacttcgttagtcaaa 4586852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 40680074 - 40680127
Alignment:
Q  92 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtt 145  Q
    |||||||||||||||||  ||||| ||||||||||| |||||||||||||||||    
T  40680074 atagtcttttaatgtatcaaaattctaaaatagtttatgattgtgcacttcgtt 40680127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 41616690 - 41616775
Alignment:
Q  99 tttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtc-aaatagttcatgatattaaaatgtttcattaata 183  Q
    ||||||||||||||||||||||||| | |||  || ||||||||||| ||| |||||||  | ||||||||||||||| |||||||    
T  41616690 tttaatgtattgaaattttaaaataatcttttgttatgcacttcgttagtcaaaatagtctacgatattaaaatgttttattaata 41616775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 21215940 - 21215999
Alignment:
Q  92 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaa 151  Q
    |||||| || ||||||||||||||| ||||||||  |||||||||||||||||| |||||    
T  21215940 atagtccttcaatgtattgaaatttcaaaatagtcattgattgtgcacttcgttagtcaa 21215999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 29908950 - 29909009
Alignment:
Q  102 aatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtc-aaatagttcat 160  Q
    ||||||||||||||||||||||||| ||||||||||| || ||| ||| |||||||||||    
T  29908950 aatgtattgaaattttaaaatagttattgattgtgcatttggttagtcaaaatagttcat 29909009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 42844884 - 42844970
Alignment:
Q  102 aatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa-tagttcatgatattaaaatgtttcattaatattgt 187  Q
    |||||||  |||||||  |||||  ||||||||| |||||  || |||||| |||||| ||||||||||||||||||||||||||||    
T  42844884 aatgtatcaaaattttcgaataggctttgattgtacacttaattagtcaaaatagttcctgatattaaaatgtttcattaatattgt 42844970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 7681064 - 7681014
Alignment:
Q  102 aatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 152  Q
    |||||||  ||||||||||||||| |||||||||||| |||||| ||||||    
T  7681064 aatgtatcaaaattttaaaatagtatttgattgtgcatttcgttagtcaaa 7681014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 152
Target Start/End: Complemental strand, 8340411 - 8340310
Alignment:
Q  50 taataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtc 149  Q
    ||||| ||||||||||||| |||||| |||| || ||| || | |||| ||||||||| | ||| || |||||| |||||||||||||| |||| | |||    
T  8340411 taatagtcattttggttcttgaatgtataatgagtagtcacaacagtcctttaatgta-tcaaaattcaaaataatttttgattgtgcatttcgctagtc 8340313  T
Q  150 aaa 152  Q
    |||    
T  8340312 aaa 8340310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 42660155 - 42660085
Alignment:
Q  70 gaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcact 140  Q
    |||||||| ||||| ||| |  ||||||| |||||||||| | ||||||||||||| ||||||| ||||||    
T  42660155 gaatgtgtcataagtagtcagaatagtctcttaatgtattaagattttaaaatagtctttgattatgcact 42660085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 144
Target Start/End: Complemental strand, 6049205 - 6049172
Alignment:
Q  111 aaattttaaaatagtttttgattgtgcacttcgt 144  Q
    |||||||||||||||| |||||||||||||||||    
T  6049205 aaattttaaaatagttcttgattgtgcacttcgt 6049172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 140
Target Start/End: Original strand, 35447600 - 35447629
Alignment:
Q  111 aaattttaaaatagtttttgattgtgcact 140  Q
    ||||||||||||||||||||||||||||||    
T  35447600 aaattttaaaatagtttttgattgtgcact 35447629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 44362699 - 44362626
Alignment:
Q  111 aaattttaaaatagtttttgattgtgcacttcgtttgtc-aaatagttcatgatattaaaatgtttcattaata 183  Q
    ||||||||||||||||| |||||||| | |||||| ||| |||||||  || || ||||||| |||||||||||    
T  44362699 aaattttaaaatagtttctgattgtgtaattcgttagtcaaaatagtctataatgttaaaatatttcattaata 44362626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 12530851 - 12530791
Alignment:
Q  92 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 152  Q
    ||||| ||||||||||| |||||||||||||| | | ||||||||||  ||||| ||||||    
T  12530851 atagttttttaatgtatcgaaattttaaaataatatctgattgtgcaactcgttagtcaaa 12530791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 18080511 - 18080463
Alignment:
Q  92 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcact 140  Q
    ||||||| |||||||||  |||||| |||||| ||||||||||||||||    
T  18080511 atagtctcttaatgtatcaaaatttcaaaatattttttgattgtgcact 18080463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 8929495 - 8929553
Alignment:
Q  94 agtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 152  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||| ||| ||||||    
T  8929495 agtcttttaatgtattaaaattttaaaatagtttttgattttgcactttgttagtcaaa 8929553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 23441495 - 23441548
Alignment:
Q  92 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtt 145  Q
    |||||| || ||||||| ||||||||||||||||| ||||||||||||||||||    
T  23441495 atagtccttcaatgtatcgaaattttaaaatagttattgattgtgcacttcgtt 23441548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 20889211 - 20889278
Alignment:
Q  89 accatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaatagt 156  Q
    |||||||| | ||||||| | |||||||||||||||| ||| |||||||||| |||| ||||||||||    
T  20889211 accatagtatattaatgtgtcgaaattttaaaatagtctttaattgtgcactgcgttagtcaaatagt 20889278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 46720071 - 46720021
Alignment:
Q  102 aatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 152  Q
    ||||||||||||||||||||| || ||||||||||||||| ||| ||||||    
T  46720071 aatgtattgaaattttaaaatggtatttgattgtgcactttgttagtcaaa 46720021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 12849814 - 12849733
Alignment:
Q  60 tttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcactt 141  Q
    ||||||||| ||||||| ||| || ||| || |||||||||||||||||  |||||  |||||||| | |||||||||||||    
T  12849814 tttggttcttgaatgtgcaatgagtagtcacaatagtcttttaatgtatcaaaattacaaaatagtctctgattgtgcactt 12849733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 23457879 - 23457830
Alignment:
Q  92 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcactt 141  Q
    |||||| || ||||||| ||||||||||||||||| ||||||||||||||    
T  23457879 atagtccttcaatgtatcgaaattttaaaatagttattgattgtgcactt 23457830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 23474549 - 23474602
Alignment:
Q  92 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtt 145  Q
    |||||| || |||||||  |||||||||||||||| ||||||||||||||||||    
T  23474549 atagtccttcaatgtatcaaaattttaaaatagttattgattgtgcacttcgtt 23474602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 8062968 - 8062885
Alignment:
Q  58 attttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcactt 141  Q
    |||||||| || ||||||||||  || ||| || ||||||| | |||||||| ||||||||||||||| | ||||| |||||||    
T  8062968 attttggtccttgaatgtgtaacgagtagtcacaatagtctgtcaatgtattaaaattttaaaatagtatctgattttgcactt 8062885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 39608688 - 39608609
Alignment:
Q  49 ataataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttt 128  Q
    |||||||||||||| || || ||||||||||  || ||| || ||||| ||| |||||||  ||||||||||||||||||    
T  39608688 ataataatcattttagtccttgaatgtgtaaggagtagttacaatagtttttcaatgtatcaaaattttaaaatagtttt 39608609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 152
Target Start/End: Original strand, 10228752 - 10228802
Alignment:
Q  102 aatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 152  Q
    ||||||| ||||||| |||||||| |||||||||||| |||||| ||||||    
T  10228752 aatgtatcgaaatttcaaaatagtctttgattgtgcaattcgttagtcaaa 10228802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 152
Target Start/End: Original strand, 24127206 - 24127256
Alignment:
Q  102 aatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 152  Q
    |||||||||||||| ||||| |||| |||||||||||| ||||| ||||||    
T  24127206 aatgtattgaaattctaaaaaagttcttgattgtgcacctcgttagtcaaa 24127256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 23532887 - 23532940
Alignment:
Q  92 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtt 145  Q
    |||||| || || |||| ||||||||||||||||| ||||||||| ||||||||    
T  23532887 atagtccttcaaggtatcgaaattttaaaatagttattgattgtggacttcgtt 23532940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 140
Target Start/End: Complemental strand, 29197201 - 29197172
Alignment:
Q  111 aaattttaaaatagtttttgattgtgcact 140  Q
    ||||||||||||||||||||||||||||||    
T  29197201 aaattttaaaatagtttttgattgtgcact 29197172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 5429331 - 5429427
Alignment:
Q  48 aataataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtat-tgaaattttaaaatagtttttgattgtgcacttcg 143  Q
    ||||||| ||| ||||||||  |||||||||||||| ||  || || || |||||| ||||   |||||||||||||||||  ||||||||||||||    
T  5429331 aataatagtcaatttggttcctgaatgtgtaataagtagccacaatggttttttaaagtatcaaaaattttaaaatagtttcggattgtgcacttcg 5429427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 134
Target Start/End: Complemental strand, 30793193 - 30793161
Alignment:
Q  102 aatgtattgaaattttaaaatagtttttgattg 134  Q
    |||||||||||||||||||||||||||| ||||    
T  30793193 aatgtattgaaattttaaaatagtttttaattg 30793161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 43576526 - 43576486
Alignment:
Q  98 ttttaatgtattgaaattttaaaatagtttttgattgtgca 138  Q
    |||||||||||| |||||| ||||||||| |||||||||||    
T  43576526 ttttaatgtattaaaatttaaaaatagttgttgattgtgca 43576486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 187
Target Start/End: Original strand, 33747270 - 33747407
Alignment:
Q  51 aataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtc- 149  Q
    |||||| |||||||  || |||||||||| ||| ||| || |||||  || ||||||| ||||||| |||| ||| ||||||| ||||||||||| |||     
T  33747270 aataattattttggaccttgaatgtgtaacaagtagtcacaatagttcttcaatgtatcgaaatttcaaaacagtatttgattctgcacttcgttagtca 33747369  T
Q  150 aaatagttcatgatattaaaatgtttcattaatattgt 187  Q
    |||||||   ||||||||||||| | ||||||||||||    
T  33747370 aaatagtctctgatattaaaatgctccattaatattgt 33747407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 187
Target Start/End: Complemental strand, 27900989 - 27900871
Alignment:
Q  70 gaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtc-aaatagttcatgatattaa 168  Q
    ||||||||||| || ||| |  |||||| || |||||||  ||| ||||||||||| | |||||||||| || ||| ||| ||||||| |||||  ||||    
T  27900989 gaatgtgtaatgagtagtcagaatagtccttcaatgtataaaaaatttaaaatagtctatgattgtgcaattagttagtcgaaatagtccatgacgttaa 27900890  T
Q  169 aatgtttcattaatattgt 187  Q
    |||||||||||||||||||    
T  27900889 aatgtttcattaatattgt 27900871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 38445233 - 38445183
Alignment:
Q  92 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttc 142  Q
    |||||| |||||||||| |||||| ||||||||| ||||||||||||||||    
T  38445233 atagtcctttaatgtatcgaaattctaaaatagtctttgattgtgcacttc 38445183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 29795324 - 29795276
Alignment:
Q  92 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcact 140  Q
    ||||||||||||| |||  ||||||||||||||| ||||||||||||||    
T  29795324 atagtcttttaatatatcaaaattttaaaatagtatttgattgtgcact 29795276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 39162406 - 39162490
Alignment:
Q  50 taataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattg 134  Q
    ||||| |||||||||| || ||||| ||||| || | | || |||||  || ||||||||||||||| |||||||||||||||||    
T  39162406 taatagtcattttggtccttgaatgcgtaatgagtaatcacaatagtacttcaatgtattgaaatttcaaaatagtttttgattg 39162490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 21379283 - 21379330
Alignment:
Q  98 ttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtt 145  Q
    ||||||| |||| |||| |||||||||||||||| |||||||||||||    
T  21379283 ttttaatatatttaaatattaaaatagtttttgaatgtgcacttcgtt 21379330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 31415111 - 31415068
Alignment:
Q  99 tttaatgtattgaaattttaaaatagtttttgattgtgcacttc 142  Q
    ||||||||||| ||||||||||||||| |||||||||| |||||    
T  31415111 tttaatgtatttaaattttaaaatagtatttgattgtgtacttc 31415068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 43115654 - 43115693
Alignment:
Q  97 cttttaatgtattgaaattttaaaatagtttttgattgtg 136  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  43115654 cttttagtatattgaaattttaaaatagtttttgattgtg 43115693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 45679559 - 45679594
Alignment:
Q  105 gtattgaaattttaaaatagtttttgattgtgcact 140  Q
    ||||| ||||||||||||||||||||||||||||||    
T  45679559 gtattaaaattttaaaatagtttttgattgtgcact 45679594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 51849608 - 51849558
Alignment:
Q  102 aatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 152  Q
    |||||||| ||||||||||||||||| ||||||| |||||| || ||||||    
T  51849608 aatgtattaaaattttaaaatagtttgtgattgtacacttctttagtcaaa 51849558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 2262216 - 2262183
Alignment:
Q  92 atagtcttttaatgtattgaaattttaaaatagt 125  Q
    |||||| |||||||||||||||||||||||||||    
T  2262216 atagtcctttaatgtattgaaattttaaaatagt 2262183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 10019010 - 10018969
Alignment:
Q  111 aaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 152  Q
    |||||||||||||||||||||||||| ||||| || ||||||    
T  10019010 aaattttaaaatagtttttgattgtgtacttctttagtcaaa 10018969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 45679793 - 45679705
Alignment:
Q  101 taatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtc-aaatagttcatgatattaaaatgtttcattaatattgtt 188  Q
    ||||||||  ||||||||||||||||  |||||||||| |||||| ||| ||||||| | | || ||||||| ||| ||||| ||||||    
T  45679793 taatgtataaaaattttaaaatagttcatgattgtgcaattcgttagtcaaaatagtccctaatgttaaaatattttattaaaattgtt 45679705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 47944603 - 47944560
Alignment:
Q  102 aatgtattgaaattttaaaatagtttttgattgtgcacttcgtt 145  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  47944603 aatgtattgaaattttaaaatagtctttgattgtgcacttcgtt 47944560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 23195786 - 23195690
Alignment:
Q  92 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttg-tcaaatagttcatgatattaaaatgtttcattaatattgt 187  Q
    ||||||||| |||||||| ||||||||||||| ||| |||||||||| ||| || | |||||||||  |||| |||||| | |||| ||||||||||    
T  23195786 atagtctttcaatgtattaaaattttaaaataatttctgattgtgcatttcattagttcaaatagtctatgacattaaagtatttcgttaatattgt 23195690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 45681451 - 45681387
Alignment:
Q  92 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaatagt 156  Q
    ||||||||| ||||||||||||||||||||||||  |||||| ||||||| | | ||||||||||    
T  45681451 atagtctttaaatgtattgaaattttaaaatagtccttgattatgcactttgctagtcaaatagt 45681387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 187
Target Start/End: Original strand, 14984406 - 14984544
Alignment:
Q  49 ataataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgt 148  Q
    |||||| |||||||||| || ||||||||||  || ||| || ||||||  | ||| ||| ||||||| |||||| |   ||||||||||||||||| ||    
T  14984406 ataatagtcattttggtcct-gaatgtgtaacgagtagtcacaatagtccctcaatatatcgaaatttcaaaatactccctgattgtgcacttcgttagt 14984504  T
Q  149 c-aaatagttcatgatattaaaatgtttcattaatattgt 187  Q
    | ||||||||| ||| |||||||| |||| ||||||||||    
T  14984505 caaaatagttcctgacattaaaatatttcgttaatattgt 14984544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 102 - 152
Target Start/End: Original strand, 47944335 - 47944385
Alignment:
Q  102 aatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 152  Q
    ||||||| |||||||||||||||| ||||||||||||||| ||| ||||||    
T  47944335 aatgtatcgaaattttaaaatagtctttgattgtgcactttgttagtcaaa 47944385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 32536464 - 32536509
Alignment:
Q  100 ttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtt 145  Q
    |||||||||||||||| ||||||| |||||||||||||| ||||||    
T  32536464 ttaatgtattgaaattctaaaataatttttgattgtgcatttcgtt 32536509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 141
Target Start/End: Complemental strand, 30843910 - 30843819
Alignment:
Q  50 taataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcactt 141  Q
    ||||| ||| ||||||||  ||||||||||| || ||| || ||||||| |||||||||  |||||  |||||||| | |||||||||||||    
T  30843910 taatagtcactttggttcctgaatgtgtaatgagtagtcacaatagtctcttaatgtatcaaaattccaaaatagtctctgattgtgcactt 30843819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 7672336 - 7672410
Alignment:
Q  49 ataataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaata 123  Q
    |||||| |||||||||| || |||||||||||||  ||| |  ||| |||||||||||||| ||||| |||||||    
T  7672336 ataatagtcattttggtccttgaatgtgtaataaatagttataataatcttttaatgtattaaaattctaaaata 7672410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 39336839 - 39336789
Alignment:
Q  100 ttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtca 150  Q
    ||||| |||| |||||||||||||||||||||||| | |||||||| ||||    
T  39336839 ttaatatattaaaattttaaaatagtttttgattgcggacttcgttagtca 39336789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 20936523 - 20936486
Alignment:
Q  150 aaatagttcatgatattaaaatgtttcattaatattgt 187  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  20936523 aaatagtttctgatattaaaatgtttcattaatattgt 20936486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 29079272 - 29079235
Alignment:
Q  150 aaatagttcatgatattaaaatgtttcattaatattgt 187  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  29079272 aaatagttcctaatattaaaatgtttcattaatattgt 29079235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 52330675 - 52330622
Alignment:
Q  99 tttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 152  Q
    ||||||||||||||||||||||||||| ||  ||| ||||| ||||| ||||||    
T  52330675 tttaatgtattgaaattttaaaatagtcttaaattatgcacctcgttggtcaaa 52330622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 22235539 - 22235487
Alignment:
Q  100 ttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 152  Q
    ||||||||| ||||||| |||||| |||||||||||||| || ||| ||||||    
T  22235539 ttaatgtatcgaaatttcaaaataatttttgattgtgcaatttgttagtcaaa 22235487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 187
Target Start/End: Original strand, 40124264 - 40124402
Alignment:
Q  50 taataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtc 149  Q
    ||||| ||| |||||| || ||||||||||  || ||| || ||||||  ||||||||| ||||||||||||| || | |||||||||||| |||| |||    
T  40124264 taatagtcactttggtccttgaatgtgtaacgagtagtcacaatagtccattaatgtatcgaaattttaaaatggtctctgattgtgcactccgttagtc 40124363  T
Q  150 -aaatagttcatgatattaaaatgtttcattaatattgt 187  Q
     ||||||| ||| | |||||| |  ||||||||||||||    
T  40124364 aaaatagtccataacattaaagtacttcattaatattgt 40124402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 187
Target Start/End: Original strand, 12676427 - 12676519
Alignment:
Q  96 tcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtc-aaatagttcatgatattaaaatgtttcattaatattgt 187  Q
    ||||||||||||| ||||| |||||||||| | ||||||||||||| ||| ||| ||||| ||  |||  ||||||||||| |||||||||||    
T  12676427 tcttttaatgtatcgaaatgttaaaatagtctatgattgtgcacttagttagtcaaaataatttctgacgttaaaatgttttattaatattgt 12676519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 19206566 - 19206506
Alignment:
Q  92 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 152  Q
    |||||| ||||||||||  ||||||||||||||||| ||||| ||||||| ||| ||||||    
T  19206566 atagtcctttaatgtatcaaaattttaaaatagtttctgattatgcactttgttagtcaaa 19206506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 6686797 - 6686836
Alignment:
Q  111 aaattttaaaatagtttttgattgtgcacttcgtttgtca 150  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  6686797 aaattttaaaatagtttttgattgtgcactttgttagtca 6686836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 6788550 - 6788492
Alignment:
Q  92 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtca 150  Q
    |||||| || |||||||  ||||||||||||||||| ||||||||||||| ||| ||||    
T  6788550 atagtcattcaatgtatcaaaattttaaaatagtttctgattgtgcactttgttagtca 6788492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 7165831 - 7165761
Alignment:
Q  71 aatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcactt 141  Q
    |||||||||  || ||| || ||||||||| |||||||| ||||||||||||||| | ||||| |||||||    
T  7165831 aatgtgtaacgagtagtcacaatagtctttcaatgtattaaaattttaaaatagtctctgattttgcactt 7165761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 20966261 - 20966220
Alignment:
Q  111 aaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 152  Q
    ||||||||||||||| ||||||||||||||| ||| ||||||    
T  20966261 aaattttaaaatagtctttgattgtgcactttgttagtcaaa 20966220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 1517582 - 1517626
Alignment:
Q  92 atagtcttttaatgtattgaaattttaaaatagtttttgattgtg 136  Q
    |||||| || ||||||| |||||||||||||||| ||||||||||    
T  1517582 atagtccttcaatgtatcgaaattttaaaatagtctttgattgtg 1517626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 18858011 - 18858055
Alignment:
Q  92 atagtcttttaatgtattgaaattttaaaatagtttttgattgtg 136  Q
    ||||||||||||| ||| ||||||||||||||| || ||||||||    
T  18858011 atagtcttttaatatatcgaaattttaaaatagattatgattgtg 18858055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 18903233 - 18903185
Alignment:
Q  92 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcact 140  Q
    |||||| || ||||||| |||||| ||||||||||| ||||||||||||    
T  18903233 atagtcattcaatgtatcgaaattctaaaatagtttctgattgtgcact 18903185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 29488709 - 29488745
Alignment:
Q  102 aatgtattgaaattttaaaatagtttttgattgtgca 138  Q
    |||||||  ||||||||||||||||||||||||||||    
T  29488709 aatgtatcaaaattttaaaatagtttttgattgtgca 29488745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 9307517 - 9307432
Alignment:
Q  102 aatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaatagttcatgatattaaaatgtttcattaatattgt 187  Q
    ||||||||||||||||||||||||   ||| |||||| ||| ||||||||||||| | ||| ||||||||  |||||||| |||||    
T  9307517 aatgtattgaaattttaaaatagtccctgaatgtgcatttcatttgtcaaatagtccctgacattaaaataattcattaacattgt 9307432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 145
Target Start/End: Original strand, 9307250 - 9307325
Alignment:
Q  70 gaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtt 145  Q
    |||||||||||||  |||||  ||||||| | |||||||  ||||||||||||||||||| ||| |||||||||||    
T  9307250 gaatgtgtaataaatagtgataatagtctctaaatgtatcaaaattttaaaatagttttttattatgcacttcgtt 9307325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 31315343 - 31315298
Alignment:
Q  95 gtcttttaatgtattgaaattttaaaatagtttttgattgtgcact 140  Q
    |||| |||||||||| ||||||||||||||| ||||||||||||||    
T  31315343 gtctcttaatgtattaaaattttaaaatagtctttgattgtgcact 31315298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 25085141 - 25085089
Alignment:
Q  100 ttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 152  Q
    |||||||||  ||||||||||||| ||||||||||||||||| ||| ||||||    
T  25085141 ttaatgtatcaaaattttaaaatactttttgattgtgcactttgttagtcaaa 25085089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 140
Target Start/End: Complemental strand, 9762668 - 9762629
Alignment:
Q  101 taatgtattgaaattttaaaatagtttttgattgtgcact 140  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  9762668 taatgtatcaaaattttaaaatagtttttgattgtgcact 9762629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 185
Target Start/End: Complemental strand, 4964351 - 4964258
Alignment:
Q  93 tagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa-tagttcatgatattaaaatgtttcattaatatt 185  Q
    ||||| || |||||||| |||||||||||||||   | ||| |||||||  || |||||| |||||  ||||||||||||| ||||||||||||    
T  4964351 tagtccttcaatgtattaaaattttaaaatagtcaataattatgcactttattagtcaaaatagtttttgatattaaaatgcttcattaatatt 4964258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 30000038 - 30000001
Alignment:
Q  98 ttttaatgtattgaaattttaaaatagtttttgattgt 135  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  30000038 ttttaaggtattaaaattttaaaatagtttttgattgt 30000001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 31803956 - 31804009
Alignment:
Q  99 tttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 152  Q
    ||||||||||  ||||||||||||| ||||||||||| || |||||| ||||||    
T  31803956 tttaatgtatcaaaattttaaaataatttttgattgttcatttcgttagtcaaa 31804009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 28995595 - 28995539
Alignment:
Q  96 tcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 152  Q
    |||||||| ||||||||||||||||||| | ||||||| |  |||||||| ||||||    
T  28995595 tcttttaacgtattgaaattttaaaataatatttgattatttacttcgttagtcaaa 28995539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 81349 - 81397
Alignment:
Q  104 tgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 152  Q
    ||||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  81349 tgtattgaaatttcaaaatagtttatgattgtgcacttcgttagtcaaa 81397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 185
Target Start/End: Original strand, 23159081 - 23159165
Alignment:
Q  102 aatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgt-caaatagttcatgatattaaaatgtttcattaatatt 185  Q
    |||||||  ||||||||||||||| |||||||||||| |||||| ||  ||||||| | |||| || ||||||||||||||||||    
T  23159081 aatgtatcaaaattttaaaatagtatttgattgtgcatttcgttagtaaaaatagtccctgatgttgaaatgtttcattaatatt 23159165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 42932827 - 42932887
Alignment:
Q  92 atagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 152  Q
    ||||| ||||||||||| |||||||||||||||||| | |||||| ||||| |||||||||    
T  42932827 atagttttttaatgtatcgaaattttaaaatagtttctcattgtgtacttcatttgtcaaa 42932887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 296591 - 296546
Alignment:
Q  96 tcttttaatgtattgaaattttaaaatagtttttgattgtgcactt 141  Q
    |||||||||| |||||||||||||||||  ||||||||||||||||    
T  296591 tcttttaatgcattgaaattttaaaataagttttgattgtgcactt 296546  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 3599845 - 3599881
Alignment:
Q  100 ttaatgtattgaaattttaaaatagtttttgattgtg 136  Q
    |||||||||||||||||||||||||| ||||||||||    
T  3599845 ttaatgtattgaaattttaaaatagtgtttgattgtg 3599881  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 13200891 - 13200852
Alignment:
Q  99 tttaatgtattgaaattttaaaatagtttttgattgtgca 138  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  13200891 tttaatgtagtgaaattttaaaatattttttgattgtgca 13200852  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 8206379 - 8206297
Alignment:
Q  70 gaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 152  Q
    |||||||||||||| ||| |  |||||| |||||||||| ||||||||| ||||||   ||| |||||||||| || ||||||    
T  8206379 gaatgtgtaataagtagtcatgatagtcctttaatgtatcgaaattttataatagtccctgaatgtgcacttcattagtcaaa 8206297  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 37269159 - 37269117
Alignment:
Q  93 tagtcttttaatgtattgaaattttaaaatagtttttgattgt 135  Q
    |||| ||| ||||||||||||||| ||||||||||||||||||    
T  37269159 tagtttttaaatgtattgaaatttaaaaatagtttttgattgt 37269117  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 9577097 - 9577129
Alignment:
Q  93 tagtcttttaatgtattgaaattttaaaatagt 125  Q
    |||||||||||||||| ||||||||||||||||    
T  9577097 tagtcttttaatgtatcgaaattttaaaatagt 9577129  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 14461822 - 14461750
Alignment:
Q  106 tattgaaattttaaaatagtttttgattgtgcacttcgtttgtc-aaatagttcatgatattaaaatgtttca 177  Q
    |||| ||||||||||||||| | ||||||| ||||||||| ||| ||||||| |  |||||||||||| ||||    
T  14461822 tattcaaattttaaaatagtctctgattgtacacttcgttagtcaaaatagtccccgatattaaaatgcttca 14461750  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 19342566 - 19342534
Alignment:
Q  106 tattgaaattttaaaatagtttttgattgtgca 138  Q
    |||| ||||||||||||||||||||||||||||    
T  19342566 tattaaaattttaaaatagtttttgattgtgca 19342534  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 26675375 - 26675287
Alignment:
Q  50 taataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgca 138  Q
    ||||| ||| ||||||||| ||||||||||| |  | | || ||| |||||||||||||  | ||| ||||||||| ||||||||||||    
T  26675375 taatagtcactttggttcttgaatgtgtaatgactaatcacaataatcttttaatgtatcaatattctaaaatagtctttgattgtgca 26675287  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 26946983 - 26946895
Alignment:
Q  50 taataatcattttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgca 138  Q
    ||||| ||| ||||||||| ||||||||||| |  | | || ||| |||||||||||||  | ||| ||||||||| ||||||||||||    
T  26946983 taatagtcactttggttcttgaatgtgtaatgactaatcacaataatcttttaatgtatcaatattctaaaatagtctttgattgtgca 26946895  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 27001482 - 27001402
Alignment:
Q  60 tttggttctcgaatgtgtaataagcagtgaccatagtcttttaatgtattgaaattttaaaatagtttttgattgtgcact 140  Q
    ||||||||| ||||||||||| || ||| || ||||||| |  || |||  ||||||||||||||| | ||||||||||||    
T  27001482 tttggttcttgaatgtgtaatgagtagtcacaatagtctctcgatatatcaaaattttaaaatagtctctgattgtgcact 27001402  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 42525231 - 42525287
Alignment:
Q  96 tcttttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtcaaa 152  Q
    |||||||||||||   |||||||||||| |||||||||||| ||||| || ||||||    
T  42525231 tcttttaatgtatcataattttaaaataatttttgattgtggacttcattagtcaaa 42525287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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