View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7036_high_11 (Length: 325)
Name: NF7036_high_11
Description: NF7036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7036_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 49 - 232
Target Start/End: Complemental strand, 41938703 - 41938517
Alignment:
| Q |
49 |
ttgatgaataattaatcatcaatattcacattagtatgcaatgaactacgaaagtagaatcaaataatttcacaagtgcttat---gctaggaaataaaa |
145 |
Q |
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| T |
41938703 |
ttgatgaataattaatcatcaatattcacattagtatgcaatgtactacgaaagtagaatcaaataatttcacaagtgcttattatgctagtaaataaaa |
41938604 |
T |
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| Q |
146 |
ttatgtaagaaaataaaaacaaccttggtgcatgaactaatccagaaaaactcaatagatgtttatacattttgtctgggagacatt |
232 |
Q |
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| T |
41938603 |
ttatgtaagaaaataaaaacaaccttggtgcatgaactaatccagaaaaactcaatagatttttatacattttgtctgaaagacatt |
41938517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 41929335 - 41929230
Alignment:
| Q |
211 |
tacattttgtctgggagacattaattcaacaatttcgaagacatgaaaacctagcaaactagcaataatactctcatcactacattttgtaccttatcag |
310 |
Q |
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|||||||||| || ||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41929335 |
tacattttgtttgtgagacatcaattcaacaatttcaaagacaagaaaacctagcaaactagcaataatactctcatcactacattttgtaccttatcag |
41929236 |
T |
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| Q |
311 |
tattat |
316 |
Q |
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|||||| |
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| T |
41929235 |
tattat |
41929230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 108 - 212
Target Start/End: Complemental strand, 41929674 - 41929568
Alignment:
| Q |
108 |
tcaaataatttcacaagtgcttatgctaggaaataaaat-tatgtaagaaaataaaaacaaccttggtgcatgaactaatcc-agaaaaactcaatagat |
205 |
Q |
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| T |
41929674 |
tcaaataatttcacaagtgcttatgctagtaaaaaaaatatatgtaagcaaatgaaaataaccttggtgcatgaactaatccaagaaaaactcaataaat |
41929575 |
T |
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| Q |
206 |
gtttata |
212 |
Q |
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||||||| |
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| T |
41929574 |
gtttata |
41929568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 108 - 204
Target Start/End: Complemental strand, 41912113 - 41912012
Alignment:
| Q |
108 |
tcaaataatttcacaagtgcttatgctaggaaataaaattatgtaagaaaataaaaaca--accttggtgc--atgaactaatcca-gaaaaactcaata |
202 |
Q |
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|||||||||| ||| |||||||||| ||| ||||||||||||||||| ||||||||||| |||||||||| ||||||||||||| ||||||||||||| |
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| T |
41912113 |
tcaaataattacactagtgcttatgatagtaaataaaattatgtaagcaaataaaaacaagaccttggtgcatatgaactaatccatgaaaaactcaata |
41912014 |
T |
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| Q |
203 |
ga |
204 |
Q |
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|| |
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| T |
41912013 |
ga |
41912012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 276
Target Start/End: Complemental strand, 41911915 - 41911850
Alignment:
| Q |
211 |
tacattttgtctgggagacattaattcaacaatttcgaagacatgaaaacctagcaaactagcaat |
276 |
Q |
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| T |
41911915 |
tacattttgattgggagacattaattcaacaatttcaaagacatgaaaacctaacaaactcgcaat |
41911850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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