View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7036_high_3 (Length: 552)

Name: NF7036_high_3
Description: NF7036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7036_high_3
NF7036_high_3
[»] chr6 (5 HSPs)
chr6 (1-396)||(663613-664013)
chr6 (1-222)||(908100-908321)
chr6 (433-535)||(664050-664152)
chr6 (433-537)||(907867-907971)
chr6 (176-220)||(10157995-10158039)
[»] chr7 (4 HSPs)
chr7 (264-327)||(44172881-44172944)
chr7 (257-331)||(36314611-36314685)
chr7 (281-347)||(38134414-38134480)
chr7 (173-221)||(36314628-36314676)
[»] chr2 (1 HSPs)
chr2 (170-221)||(44605137-44605188)
[»] chr5 (2 HSPs)
chr5 (270-343)||(16315862-16315935)
chr5 (270-318)||(19625928-19625976)
[»] chr3 (1 HSPs)
chr3 (264-332)||(8039206-8039274)
[»] chr4 (2 HSPs)
chr4 (270-332)||(18513238-18513300)
chr4 (291-340)||(5654609-5654658)
[»] chr8 (1 HSPs)
chr8 (281-346)||(6501481-6501546)
[»] chr1 (2 HSPs)
chr1 (264-341)||(43328458-43328535)
chr1 (170-218)||(40158408-40158456)


Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 663613 - 664013
Alignment:
Q  1 ctgcattattatgcgaactccattcacaaatcctcgcttcctctgatatcaaaagaggcaaaatttcacataagcaaatcataaaccataaaaactgttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  663613 ctgcattattatgcgaactccattcacaaatcctcgcttcctctgatatcaaaagaggcaaaatttcacataagcaaatcataaaccataaaaattgttc 663712  T
Q  101 gtatataaaatctttgtagcaccaacacttcttatcaaaggtgtgccaagtgtacaatgcatgtaagtatctaacaccgacacatgtaatttcattgaaa 200  Q
     |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663713 atatatataatctttgtagcaccaacacttcttatcaaaggtgtgccaagtgtacaatgcatgtaagtatctaacaccgacacatgtaatttcattgaaa 663812  T
Q  201 tatgtctttttctcaaattataaatggtgttagaatcgacacttctaatcaaaggtgtgtctaacact-----aacacaacactaacacatgtggttaca 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||    
T  663813 tatgtctttttctcaaattataaatggtgttagaatcgacacttctaatcaaaggtgtgtctaacactaacacaacacaacactaacacatgtggttaca 663912  T
Q  296 ttgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaatgtccatattgtatcaggtgttcatacttcaaatctaattaatacagcgtaga 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  663913 ttgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaatgtccatattgtatcaggtgttcatacttcaaatctaattaatacaacgtaga 664012  T
Q  396 t 396  Q
    |    
T  664013 t 664013  T

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Target: chr6; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 908321 - 908100
Alignment:
Q  1 ctgcattattatgcgaactccattcacaaatcctcgcttcctctgatatcaaaagaggcaaaatttcacataagcaaatcataaaccataaaaactgttc 100  Q
    |||||||||||||| |||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||  ||||     
T  908321 ctgcattattatgcaaactccattcacaaattctcgctttctctggtatcaaaagaggcaaaatttcacataagtaaatcataaaccataaaatttgttg 908222  T
Q  101 gtatataaaatctttgtagcaccaacacttcttatcaaaggtgtgccaagtgtacaatgcatgtaagtatctaacaccgacacatgtaatttcattgaaa 200  Q
     |||||| ||||||||||||||||||||| ||||||||||||||||||||||| | || ||||||||| ||||||||||||| |||||| | ||||||||    
T  908221 atatatataatctttgtagcaccaacactacttatcaaaggtgtgccaagtgtccgatacatgtaagtgtctaacaccgacaaatgtaagtacattgaaa 908122  T
Q  201 tatgtctttttctcaaattata 222  Q
    |||| || ||||||||||||||    
T  908121 tatgactatttctcaaattata 908100  T

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Target: chr6; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 433 - 535
Target Start/End: Original strand, 664050 - 664152
Alignment:
Q  433 cctgcatttctttctagacactgaggcaccgcaaattttcgacgagtatcaaaaaagctaacatatccctcctcattagacaaagcaagaatatgacaaa 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  664050 cctgcatttctttctagacactgaggcaccgcaaattttcgacgagtatcaaaaaagctaacatatccctcctcattagacaaagcaagaatatgacaaa 664149  T
Q  533 att 535  Q
    |||    
T  664150 att 664152  T

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Target: chr6; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 433 - 537
Target Start/End: Complemental strand, 907971 - 907867
Alignment:
Q  433 cctgcatttctttctagacactgaggcaccgcaaattttcgacgagtatcaaaaaagctaacatatccctcctcattagacaaagcaagaatatgacaaa 532  Q
    |||||||||||||||||||||  ||||||  | ||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  907971 cctgcatttctttctagacacaaaggcacttcgaattttcaacgactatcgaaaaagctaacatatccctcctcattagacaaagcaagaatatgacaaa 907872  T
Q  533 attga 537  Q
    |||||    
T  907871 attga 907867  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 10158039 - 10157995
Alignment:
Q  176 accgacacatgtaatttcattgaaatatgtctttttctcaaatta 220  Q
    |||||||||||| ||| ||||||| |||||| |||||||||||||    
T  10158039 accgacacatgtgattacattgaattatgtcattttctcaaatta 10157995  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 264 - 327
Target Start/End: Original strand, 44172881 - 44172944
Alignment:
Q  264 acactaacacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatca 327  Q
    |||| |||||||||| |||||||||| |||||||||| |||| ||| |||||||||||| ||||    
T  44172881 acaccaacacaacacaaacacatgtgattacattgaattatgtcattttctcaaattattatca 44172944  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 331
Target Start/End: Original strand, 36314611 - 36314685
Alignment:
Q  257 gtgtctaacactaacacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgt 331  Q
    ||||| ||||| || ||||||| ||||||| || ||||||||||||||| ||| |||||||||||| || |||||    
T  36314611 gtgtccaacaccaagacaacaccaacacatatgattacattgaaatatgtcattttctcaaattattatgagtgt 36314685  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 347
Target Start/End: Original strand, 38134414 - 38134480
Alignment:
Q  281 acacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaatgtcc 347  Q
    |||||| || |||||||||| |||| ||| |||||||||||| ||| ||||||||||||| ||||||    
T  38134414 acacatatgattacattgaattatgtcattttctcaaattattatcggtgtcaacatgtccatgtcc 38134480  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 36314628 - 36314676
Alignment:
Q  173 aacaccgacacatgtaatttcattgaaatatgtctttttctcaaattat 221  Q
    |||||| |||||| | ||| |||||||||||||| ||||||||||||||    
T  36314628 aacaccaacacatatgattacattgaaatatgtcattttctcaaattat 36314676  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 44605137 - 44605188
Alignment:
Q  170 tctaacaccgacacatgtaatttcattgaaatatgtctttttctcaaattat 221  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||||||||    
T  44605137 tctaacaccgacacatgtaattacattgaattatgttattttctcaaattat 44605188  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 270 - 343
Target Start/End: Complemental strand, 16315935 - 16315862
Alignment:
Q  270 acacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaat 343  Q
    |||||||||  | ||||||||||||||| || |||  ||| | |||||||||| ||||||||||||||||||||    
T  16315935 acacaacacagatacatgtggttacattcaattatatcatttcctcaaattattatcagtgtcaacatgtcaat 16315862  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 19625928 - 19625976
Alignment:
Q  270 acacaacactaacacatgtggttacattgaaatatgccatgttctcaaa 318  Q
    |||||||||| ||||||||||||||||| || ||| |||| ||||||||    
T  19625928 acacaacactgacacatgtggttacattcaattattccattttctcaaa 19625976  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 332
Target Start/End: Complemental strand, 8039274 - 8039206
Alignment:
Q  264 acactaacacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtc 332  Q
    ||||| |||||||||  |||| | || ||||||||||  ||||||| ||||||||||||||||||||||    
T  8039274 acactgacacaacaccgacacctatgattacattgaatcatgccattttctcaaattatcatcagtgtc 8039206  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 332
Target Start/End: Original strand, 18513238 - 18513300
Alignment:
Q  270 acacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtc 332  Q
    |||||||||| |||||| || |||||||||| |||| ||| |||||||||||| ||| |||||    
T  18513238 acacaacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 5654609 - 5654658
Alignment:
Q  291 ttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtc 340  Q
    |||||||||| |||| ||| |||||||||||| ||||||||| |||||||    
T  5654609 ttacattgaattatgtcattttctcaaattattatcagtgtcgacatgtc 5654658  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 346
Target Start/End: Complemental strand, 6501546 - 6501481
Alignment:
Q  281 acacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaatgtc 346  Q
    ||||||||||||||||| || |||  |||  ||||||||||| | |||||||||| ||||||||||    
T  6501546 acacatgtggttacatttaattatttcattctctcaaattattaccagtgtcaacgtgtcaatgtc 6501481  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 341
Target Start/End: Complemental strand, 43328535 - 43328458
Alignment:
Q  264 acactaacacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtca 341  Q
    |||| ||||| ||| | ||||||||||||||||| || |||  ||| |||||||||||| || ||||||||| |||||    
T  43328535 acaccaacacgacaatgacacatgtggttacattaaattatttcattttctcaaattattataagtgtcaacgtgtca 43328458  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 40158408 - 40158456
Alignment:
Q  170 tctaacaccgacacatgtaatttcattgaaatatgtctttttctcaaat 218  Q
    |||||||||||||||||| |||||||| |  |||||| |||||||||||    
T  40158408 tctaacaccgacacatgtgatttcattcatttatgtcattttctcaaat 40158456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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