View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7036_high_6 (Length: 468)
Name: NF7036_high_6
Description: NF7036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7036_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 17 - 458
Target Start/End: Complemental strand, 31465413 - 31464972
Alignment:
| Q |
17 |
ataatctacacacattctccacgtgttattcatactcagcctaaagatttcatggcattggtgcaaaagcttaccgggctctctcgctcggaggaggacg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31465413 |
ataatctacacacattctccacgtgttatacatactcagcctaaagatttcatggcattggtgcaaaagcttaccgggctctctcgctcggaggaggacg |
31465314 |
T |
|
| Q |
117 |
acgggagcaaaaatggcaaaaatgcctcgtcatctcaatatcagaccccgaagaaggagcctgtgagctgcaactacgggatgttgatcggagacaaaga |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31465313 |
acgggagcaaaaatggcaaaaatgcctcgtcgtctcaatatcagaccccgaagaaggagcctgtgagctgcaactatgggatgttgatcggagacaaaga |
31465214 |
T |
|
| Q |
217 |
gaatgatcgaaaaaatgttgttttgcttagaaatgaggacagcgacacatcctcatcagtgatcaccgatgagaataattatggtaacaacgttggtgaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31465213 |
gaatgatcgaaaaaatgttgttttgcttagaaatgaggacaatgacacatcctcatcggtgatcaccgatgagaataattatggtaacaacgtcggtgaa |
31465114 |
T |
|
| Q |
317 |
aatcaagttaactcgtgtttcattccatcagatacattgatgttggagcctccgttgaacccttacatgacaaacttcttggcgtcgagctcagccgagt |
416 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31465113 |
aatcaggttaactcgtgtttcattccatcagatacattgatgttggagcctccgttgaacccttacatgacaaacttcttggcgtcgagctcagccgagt |
31465014 |
T |
|
| Q |
417 |
tcatgtgctcaagtcagcccttattgaactactcagattcat |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31465013 |
tcatgtgctcaagtcagcccttattgaactactcagattcat |
31464972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University