View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7036_high_8 (Length: 435)
Name: NF7036_high_8
Description: NF7036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7036_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 17 - 424
Target Start/End: Complemental strand, 27432199 - 27431792
Alignment:
| Q |
17 |
gttttaaatttataacaacattgaatagatgccccattttgaaccttatccaagcttatgcattgtagggcacccaactttgcaaacgaccctcttcttg |
116 |
Q |
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| T |
27432199 |
gttttaaatttataacaacattgaatagatgccccattttgaaccttatccaagcttatgtattgtagggcacccaactttgcaaacgaccctcttcttg |
27432100 |
T |
|
| Q |
117 |
tccgtacctcaatgtttcttctatattcgcnnnnnnnc-aatttcaggggcaaaatattccaggggcaaaatagacgttttcatttccacaccagccaaa |
215 |
Q |
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|||||||||||| ||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27432099 |
tccgtacctcaaggtttcttctatattcgcaaaaaatccaatttcaggggtaaaatattccaggggcaaaatagacgttttcatttccacaccagccaaa |
27432000 |
T |
|
| Q |
216 |
aacattggctactattactcggctggtaaccaatcaaaacacgccacctgttcatgacgtatcacactactttttgatgacgtcaccacttctaccgtaa |
315 |
Q |
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||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27431999 |
aacattggcgactgttactcgcctggtaaccaatcaaaacacgccacctgttcatgacgtatcacactactttttgatgacgtcaccacttct-ccgtaa |
27431901 |
T |
|
| Q |
316 |
gcatttgttacccacgcgctatcctccattcaatgtttcacgcgaggatccaaagccatacacgtttcatataatacatcctaaaccgttgtgtatatca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27431900 |
gcatttgttacccacgcgctatcctccattcaatgtttcacgcgaggatccaaagccatacacgtttcatataatacatcctaaaccgttgtgtatatca |
27431801 |
T |
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| Q |
416 |
cgctttcat |
424 |
Q |
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| T |
27431800 |
cgctttcat |
27431792 |
T |
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