View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7036_low_1 (Length: 901)
Name: NF7036_low_1
Description: NF7036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7036_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-157; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 417 - 878
Target Start/End: Original strand, 17682164 - 17682625
Alignment:
| Q |
417 |
acgacaacaagtatctcgaccttcctcccatagccgcaaattatcgcatgattggcctcatttgggaacagatcgccatcctccgtaccggctcccccaa |
516 |
Q |
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| T |
17682164 |
acgataaccagtatatcggccttcctcccatagccgcaaatactggcatgatttaccacatttgggaacagatggccatcctccgtaccggctccccgaa |
17682263 |
T |
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| Q |
517 |
ggatcgttcagatgccgccgctgaacttctgtcactagcacacaacagcaacttttgcaaacattatctcatcgaggaaggaggggtggttcccattttg |
616 |
Q |
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| T |
17682264 |
ggatcgttcggacgccgccgcttcacttatgtcactagcagacgacatcaacttttacacatgtataatcatcctggaaggaggggtggttcccattttg |
17682363 |
T |
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| Q |
617 |
aagttgatgaaagaagggaacacacaagaaggaaaacaaactgctgcaagagccatcgctcttttcgtttctgacatagcagcggacaagcacgttgtct |
716 |
Q |
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| T |
17682364 |
aagttgatgaaagaagggaacacaaaagaaggaaaacaaactgctgcaagagccattgctcttttcgtttctgacatagcagcggacaagcaagttgtct |
17682463 |
T |
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| Q |
717 |
ccttcatttgcgaacaaatttccatccttcgtactgactcgttggatgatcattctgatgcagccgcatccctcgtatttctagcaaatgaaagccaccg |
816 |
Q |
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| T |
17682464 |
ccttcatttgcgaacaaatttccatccttcatactgactcgttggaggatcgttctgatgcagccgcatccctcgtatttctagcaaatgaaagcgaccg |
17682563 |
T |
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| Q |
817 |
ttacggggagatgattatcgagaaaggaggggtggggctccttttgaaattgatgaaagaag |
878 |
Q |
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| T |
17682564 |
ttatggggagatgatcatcgaagaaggaggagtagggccccttttgaaattgatgaaggaag |
17682625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 120 - 422
Target Start/End: Original strand, 17682023 - 17682310
Alignment:
| Q |
120 |
tactcaacaaggctctttccttgcttctcaagaagcgcatattcatcatcatccccatctccgtctccgtctccgtctccgcttttagcaaaacttcctt |
219 |
Q |
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| T |
17682023 |
tacttaacaaggctctttccttgcttctcaagaagcgcatattcatcatcatcccc------------------gtctccgcttttagcaaaacttccac |
17682104 |
T |
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| Q |
220 |
taaacttgaaaattccattgtcaacgtttcctggctcctccgtacctcctccccccaaaacgacaaccagtatctcggccttcctcccataaccgcaaat |
319 |
Q |
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| T |
17682105 |
caaacttcaaaattccattggcaacttttcctggctcttccgtatctcctccctccacgacgataaccagtatatcggccttcctcccatagccgcaaat |
17682204 |
T |
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| Q |
320 |
tatctcatcagtggcctcatttgggaaccgatcgccatcctcc---tcgactccccaaaggatcgttcggacgaggcagcttcagttctatcactatcac |
416 |
Q |
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| T |
17682205 |
actggcatgatttaccacatttgggaacagatggccatcctccgtaccggctccccgaaggatcgttcggacgccgccgcttcacttatgtcactagcag |
17682304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 815
Target Start/End: Original strand, 17665903 - 17666092
Alignment:
| Q |
627 |
aagaagggaacacacaagaaggaaaacaaactgctgcaagagccatcgctcttttcgtttctgacata-gcagcggacaagcacgttgtctccttcattt |
725 |
Q |
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| T |
17665903 |
aagaaggaaacacacaagaaggcaaacagaatgcttcaagagccattgctttcttcgactccaacataagccgcagacggacccattgtctcctttattt |
17666002 |
T |
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| Q |
726 |
gcgaacaaatttccatccttcgtactgactcgttggatgatcattctgatgcagccgcatccctcgtatttctagcaaatgaaagccacc |
815 |
Q |
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| T |
17666003 |
gtgaactgatttccatccttcgtaccgactcgccagaggattgttctgacgccgctgcatccctcgtgttactggcacatgaaagccacc |
17666092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 17681914 - 17681957
Alignment:
| Q |
17 |
atcaaatccaaagtggagaaactctccgatcttctccgacaggc |
60 |
Q |
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| T |
17681914 |
atcagatccaaagtggagaaactctccgatcttctacggcaggc |
17681957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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