View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7036_low_14 (Length: 273)
Name: NF7036_low_14
Description: NF7036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7036_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 45 - 262
Target Start/End: Complemental strand, 14813695 - 14813478
Alignment:
| Q |
45 |
aatactacacagatgatagcaaatttttaattgttttcgaaaaccaaataggtcctacatgtaacatgtgtccatttagacagaaagacacagacaattt |
144 |
Q |
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| T |
14813695 |
aatactacacagatgatagcaaatttttaattgttttcgaaaaccaaataggtcctacatgtaacatgtgtccatttagacagaaagacacagacaattt |
14813596 |
T |
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| Q |
145 |
gattccaataacacagctttcctcttgattaatcaaataaataatttcactaactaactatataatttgttcttttatattttatctgttatagtctgcg |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14813595 |
gattccaataacacagctttcctcttgattaatcaaataaataatttccctaactaactatataatttgttcttttatattttatctgttatagtctgcg |
14813496 |
T |
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| Q |
245 |
tattttgccataattcat |
262 |
Q |
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|||||||||||||||||| |
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| T |
14813495 |
tattttgccataattcat |
14813478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 14813745 - 14813717
Alignment:
| Q |
18 |
tgaagctaaaaggaaaatggactatgaaa |
46 |
Q |
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| T |
14813745 |
tgaagctaaaaggaaaatggactatgaaa |
14813717 |
T |
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