View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7036_low_2 (Length: 892)
Name: NF7036_low_2
Description: NF7036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7036_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 712; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 712; E-Value: 0
Query Start/End: Original strand, 23 - 873
Target Start/End: Original strand, 40892877 - 40893725
Alignment:
| Q |
23 |
acataatttcttcaccttaaacttttatcagaaatgctaatggtgtcacattaaaaatgaaaattacatgtatgtcatttttattttctttgcacaaacg |
122 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40892877 |
acataatttcttcaccttaaacttttatcagaaatgctaacggtgtcacattaaaaatgaaaattacatgtctgtcatttttattttctttgcacaaacg |
40892976 |
T |
|
| Q |
123 |
tcatttttgttatatgatactaatataatataactgatccctcttcttctcttctctcggtgacggatcttgaaccgactacctctaagttgtagggcaa |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40892977 |
tcatttttgttatatgatactaatataataaaactgatccctcttcttctcttctctcggtgacgggtcttgaaccgactacctctaagttgtagggcaa |
40893076 |
T |
|
| Q |
223 |
accttacaaccaaatggcttctcgggagacatgcaatataataaaactgatgtccaccatgttttttctaatatgccatcggtcgatctcttaatctcat |
322 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40893077 |
accttacaatcaaatggcttctcaggagacatgcaatataataaaactgatgtccaccatgttttttctaatatgtcatcggtcgatctcttaatctcat |
40893176 |
T |
|
| Q |
323 |
tcatttggagaaatatatgctcgttttgcaaataaaacaaatggatgctaaagcctnnnnnnnnnntaggagtaaaccctcattttcgtccttgaaagta |
422 |
Q |
| |
|
||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40893177 |
tcatttggaaaaatatatgctcattttgtaaataaaacaaatggatgctaaagcctaaaaaaca--taggagtaaaccctcattttcgtccttgaaagtg |
40893274 |
T |
|
| Q |
423 |
acactcgctatcggacacatccctgaatcaacgaaaattattaaaaactccttcaaagttaactccattaatcattttaatccaaaaggtttaacatcag |
522 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
40893275 |
acactcgctatcagacacatccctgaatcaacgaaaattattaaaaactccttcaaagttaactccattaatcattttaatccaaaaggttaaatatcag |
40893374 |
T |
|
| Q |
523 |
ttaagtgtgatgatttgtcttgtaactttgctgatgtggcatctgactataaatattataatgattgattggatttttcctttgacaacttggcttttat |
622 |
Q |
| |
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||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40893375 |
ttaagtgtgatgatttgtcttgtaactttactgacgtggcatctgactagaaatattataatgattgattggatttttcctttgacaacttggcttttat |
40893474 |
T |
|
| Q |
623 |
tttaattgacatttatttagaaaataaaatatcataaaacatcaaaaattcataagttctaggtaacttattaaacccagaatcaaaactcaaaagtcaa |
722 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| |
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| T |
40893475 |
tttaattgacatttatttagaaaataaaatatcataaaacatcaaaaattcataagttataggtaacctattaaacccaaaatcaaaactcaaaagtcac |
40893574 |
T |
|
| Q |
723 |
cactatcttctcaaataacctaaatcttcacaacctctcaaatgtagaatccatgacttttcaattttcttacaaaaactctacaatcatttcctttaga |
822 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
40893575 |
cactatcttctcaaataacctaaatcttcacaacctctcaaacatagaatccatgacttttcaatcttcttacaaaaactctacaatcatttcctttaga |
40893674 |
T |
|
| Q |
823 |
tccatcttctcaccctcttaaacctagaattcatttggaagaggagatttt |
873 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
40893675 |
tccatcttctcaccctcttaaacctagaattcatcaggaagaggagatttt |
40893725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 45654955 - 45654876
Alignment:
| Q |
174 |
ttctctcggtgacggatcttgaaccgactacctctaagttgtagggcaaaccttacaaccaaatggcttctcgggagaca |
253 |
Q |
| |
|
|||||||| || ||| ||| ||||||| |||||||| ||||| ||||||||||| ||||||| || |||||||||||||| |
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| T |
45654955 |
ttctctcgatgccgggtctcgaaccgagtacctctaggttgttgggcaaaccttgcaaccaagtgacttctcgggagaca |
45654876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 37144569 - 37144620
Alignment:
| Q |
202 |
tacctctaagttgtagggcaaaccttacaaccaaatggcttctcgggagaca |
253 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||| || |||||| ||||||| |
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|
| T |
37144569 |
tacctctaagttgtagggcacaccttgcaaccaagtgacttctcaggagaca |
37144620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 391 - 509
Target Start/End: Complemental strand, 11020450 - 11020332
Alignment:
| Q |
391 |
ggagtaaaccctcattttcgtccttgaaagtaacactcgctatcggacacatccctgaatcaacgaaaattattaaaaactccttcaaagttaactccat |
490 |
Q |
| |
|
||||||||||||||||| |||| ||||||| | ||||||||| ||| |||||| |||||| ||||||||||||||||| |||| |||| ||||| |
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| T |
11020450 |
ggagtaaaccctcatttgggtccctgaaagtgtccctcgctatcagaccaatccctcgatcaacagaaattattaaaaactccctcaatgttagttccat |
11020351 |
T |
|
| Q |
491 |
taatcattttaatccaaaa |
509 |
Q |
| |
|
|| ||| |||||||||||| |
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|
| T |
11020350 |
tagtcaatttaatccaaaa |
11020332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 403 - 474
Target Start/End: Complemental strand, 21402802 - 21402731
Alignment:
| Q |
403 |
cattttcgtccttgaaagtaacactcgctatcggacacatccctgaatcaacgaaaattattaaaaactcct |
474 |
Q |
| |
|
||||||||||||||||||| ||||||||| || |||| |||||| ||||| ||||||||| |||| ||||| |
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| T |
21402802 |
cattttcgtccttgaaagtgacactcgctgtctgacatgtccctggatcaatgaaaattatcaaaagctcct |
21402731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 392 - 486
Target Start/End: Original strand, 9447607 - 9447701
Alignment:
| Q |
392 |
gagtaaaccctcattttcgtccttgaaagtaacactcgctatcggacacatccctgaatcaacgaaaattattaaaaactccttcaaagttaact |
486 |
Q |
| |
|
||||||||||| |||| || | |||||||| |||| |||| ||||| |||||||||||||||||||||| |||| |||| ||| ||||||| |
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| T |
9447607 |
gagtaaacccttatttgagttcctgaaagtatacctcgttatcagacacgtccctgaatcaacgaaaattatcaaaagctccctcattgttaact |
9447701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 32024450 - 32024515
Alignment:
| Q |
190 |
tcttgaaccgactacctctaagttgtagggcaaaccttacaaccaaatggcttctcgggagacatg |
255 |
Q |
| |
|
||||||||||| | |||| | |||||||| ||||||||||||||||| ||||||| |||||||| |
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|
| T |
32024450 |
tcttgaaccgagttcctcaaggttgtaggataaaccttacaaccaaataacttctcgagagacatg |
32024515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 392 - 509
Target Start/End: Complemental strand, 38517812 - 38517695
Alignment:
| Q |
392 |
gagtaaaccctcattttcgtccttgaaagta-acactcgctatcggacacatccctgaatcaacgaaaattattaaaaactccttcaaagttaactccat |
490 |
Q |
| |
|
|||||||||||||||| |||| | |||||| ||| |||||||| ||||| |||||| ||||||||||||||| |||| |||| ||| ||||||||| | |
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| T |
38517812 |
gagtaaaccctcatttgagtccctaaaagtataca-tcgctatcagacacgtccctggatcaacgaaaattatcaaaagctccctcattgttaactccgt |
38517714 |
T |
|
| Q |
491 |
taatcattttaatccaaaa |
509 |
Q |
| |
|
|| |||| ||| ||||||| |
|
|
| T |
38517713 |
tagtcatattagtccaaaa |
38517695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 7702798 - 7702871
Alignment:
| Q |
160 |
tccctcttcttctcttctctcggtgacggatcttgaaccgactacctctaagttgtagggcaaaccttacaacc |
233 |
Q |
| |
|
||||||||||||||||||||| || || ||| ||||||| | ||||||||||||| | ||||| |||||||| |
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|
| T |
7702798 |
tccctcttcttctcttctctcaatgccgcgtctcgaaccgaattcctctaagttgtacgacaaactttacaacc |
7702871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 509
Target Start/End: Original strand, 32564510 - 32564624
Alignment:
| Q |
395 |
taaaccctcattttcgtccttgaaagtaacactcgctatcggacacatccctgaatcaacgaaaattattaaaaactccttcaaagttaactccattaat |
494 |
Q |
| |
|
||||||||||||| |||||||||||| | ||||||||| ||| ||||| |||||| ||||||||||||||||| |||| |||| ||||| | | |
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| T |
32564510 |
taaaccctcatttgggtccttgaaagtgtccctcgctatcagaccagtccctcgatcaacataaattattaaaaactccctcaatgttagttccatcagt |
32564609 |
T |
|
| Q |
495 |
cattttaatccaaaa |
509 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
32564610 |
caatttaatccaaaa |
32564624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 392 - 509
Target Start/End: Complemental strand, 36164637 - 36164520
Alignment:
| Q |
392 |
gagtaaaccctcattttcgtccttgaaagtaacactcgctatcggacacatccctgaatcaacgaaaattattaaaaactccttcaaagttaactccatt |
491 |
Q |
| |
|
|||||||||||||||| |||| ||||||| | ||||||||| ||| ||||| |||||| |||||||||||||||| |||| |||| ||| || |
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| T |
36164637 |
gagtaaaccctcatttgggtccctgaaagtgtccctcgctatcagaccagtccctcgatcaacagaaattattaaaaactctctcaatgttagttccgtt |
36164538 |
T |
|
| Q |
492 |
aatcattttaatccaaaa |
509 |
Q |
| |
|
| ||| |||||||||||| |
|
|
| T |
36164537 |
agtcaatttaatccaaaa |
36164520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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