View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7036_low_20 (Length: 227)

Name: NF7036_low_20
Description: NF7036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7036_low_20
NF7036_low_20
[»] chr7 (17 HSPs)
chr7 (28-206)||(1710746-1710926)
chr7 (71-137)||(33894710-33894776)
chr7 (64-126)||(8427107-8427169)
chr7 (71-125)||(29363603-29363657)
chr7 (72-137)||(25014032-25014097)
chr7 (71-138)||(30751601-30751668)
chr7 (85-136)||(34754745-34754796)
chr7 (81-131)||(8094395-8094445)
chr7 (71-131)||(23214944-23215004)
chr7 (71-138)||(1418501-1418568)
chr7 (82-137)||(12242327-12242382)
chr7 (67-137)||(3836600-3836670)
chr7 (80-137)||(20547320-20547377)
chr7 (66-122)||(389936-389992)
chr7 (81-137)||(36598287-36598343)
chr7 (81-137)||(39542231-39542287)
chr7 (81-133)||(40734749-40734801)
[»] chr1 (37 HSPs)
chr1 (60-137)||(32515351-32515428)
chr1 (71-137)||(26400061-26400127)
chr1 (71-137)||(28467230-28467296)
chr1 (69-137)||(9507314-9507382)
chr1 (80-195)||(31517670-31517783)
chr1 (72-206)||(10199330-10199462)
chr1 (74-137)||(43420341-43420404)
chr1 (65-127)||(3215815-3215877)
chr1 (68-138)||(5157154-5157224)
chr1 (65-115)||(33527099-33527149)
chr1 (72-117)||(2832075-2832120)
chr1 (68-137)||(7252538-7252607)
chr1 (65-126)||(9602569-9602630)
chr1 (81-118)||(33975676-33975713)
chr1 (81-137)||(4363566-4363621)
chr1 (70-126)||(15581348-15581404)
chr1 (60-128)||(24460311-24460379)
chr1 (75-131)||(28837278-28837334)
chr1 (71-138)||(4549462-4549529)
chr1 (71-126)||(21002249-21002304)
chr1 (70-121)||(49282634-49282684)
chr1 (71-137)||(3319867-3319933)
chr1 (81-206)||(6279415-6279538)
chr1 (71-195)||(6292520-6292641)
chr1 (71-137)||(6659763-6659829)
chr1 (71-137)||(26866396-26866462)
chr1 (71-124)||(1565067-1565120)
chr1 (69-134)||(14559058-14559123)
chr1 (68-136)||(1662657-1662725)
chr1 (69-125)||(11893512-11893568)
chr1 (81-137)||(16980886-16980942)
chr1 (68-100)||(22416829-22416861)
chr1 (81-137)||(27807198-27807254)
chr1 (81-121)||(29793629-29793669)
chr1 (65-137)||(34668740-34668811)
chr1 (85-137)||(37272529-37272581)
chr1 (109-137)||(43371850-43371878)
[»] chr3 (22 HSPs)
chr3 (65-137)||(22667486-22667558)
chr3 (65-137)||(22724125-22724197)
chr3 (71-137)||(50211818-50211884)
chr3 (65-129)||(44014713-44014777)
chr3 (75-137)||(27795938-27796000)
chr3 (84-137)||(11041160-11041213)
chr3 (64-137)||(24158430-24158503)
chr3 (80-195)||(48588684-48588797)
chr3 (82-137)||(20210860-20210915)
chr3 (71-126)||(21872216-21872271)
chr3 (71-137)||(32663721-32663787)
chr3 (65-131)||(41057244-41057310)
chr3 (95-136)||(1810061-1810102)
chr3 (85-137)||(45590734-45590786)
chr3 (65-136)||(5407369-5407440)
chr3 (71-137)||(2413600-2413666)
chr3 (69-134)||(27294432-27294497)
chr3 (71-132)||(49605772-49605833)
chr3 (68-136)||(1395723-1395791)
chr3 (109-137)||(14548680-14548708)
chr3 (73-137)||(33880480-33880544)
chr3 (65-137)||(50015969-50016041)
[»] chr8 (23 HSPs)
chr8 (65-135)||(9700086-9700156)
chr8 (65-129)||(16162851-16162915)
chr8 (63-138)||(43393685-43393760)
chr8 (81-137)||(1664452-1664508)
chr8 (71-137)||(2487929-2487995)
chr8 (71-137)||(6496812-6496878)
chr8 (71-137)||(33553323-33553389)
chr8 (71-124)||(10488559-10488612)
chr8 (84-137)||(24326114-24326167)
chr8 (71-135)||(14926903-14926967)
chr8 (82-137)||(7918713-7918768)
chr8 (72-134)||(8629199-8629261)
chr8 (71-137)||(10062062-10062128)
chr8 (66-124)||(44236739-44236797)
chr8 (71-100)||(9130240-9130269)
chr8 (84-137)||(21130695-21130748)
chr8 (65-98)||(43717849-43717882)
chr8 (71-131)||(2606138-2606198)
chr8 (65-137)||(10075468-10075540)
chr8 (71-119)||(18331815-18331863)
chr8 (65-137)||(30191056-30191128)
chr8 (82-126)||(31884872-31884916)
chr8 (63-99)||(43393625-43393661)
[»] chr4 (22 HSPs)
chr4 (62-137)||(2996656-2996731)
chr4 (66-137)||(27123268-27123339)
chr4 (83-137)||(18628486-18628540)
chr4 (82-129)||(4691939-4691986)
chr4 (71-137)||(19429391-19429457)
chr4 (69-138)||(25896866-25896935)
chr4 (72-137)||(46860001-46860066)
chr4 (75-135)||(18512440-18512500)
chr4 (82-137)||(4071961-4072016)
chr4 (61-100)||(17822776-17822815)
chr4 (73-136)||(21157852-21157915)
chr4 (72-126)||(1017122-1017176)
chr4 (62-136)||(17975249-17975323)
chr4 (67-101)||(22845623-22845657)
chr4 (71-121)||(56186819-56186869)
chr4 (71-136)||(2977897-2977962)
chr4 (65-98)||(19394864-19394897)
chr4 (68-121)||(32420976-32421029)
chr4 (61-98)||(45104307-45104344)
chr4 (85-134)||(56007765-56007814)
chr4 (81-137)||(33534100-33534156)
chr4 (82-126)||(50298609-50298653)
[»] chr2 (24 HSPs)
chr2 (59-131)||(28803439-28803511)
chr2 (71-137)||(11513979-11514045)
chr2 (71-126)||(41170704-41170759)
chr2 (71-121)||(11063292-11063342)
chr2 (71-137)||(22878181-22878247)
chr2 (63-137)||(37474848-37474921)
chr2 (71-188)||(43456628-43456743)
chr2 (83-136)||(13866962-13867015)
chr2 (62-137)||(6547972-6548047)
chr2 (63-126)||(15370236-15370299)
chr2 (71-126)||(40944007-40944062)
chr2 (62-136)||(3078520-3078594)
chr2 (71-137)||(4350773-4350839)
chr2 (80-122)||(25609894-25609936)
chr2 (73-123)||(33981220-33981270)
chr2 (68-122)||(40158816-40158870)
chr2 (81-138)||(9996820-9996877)
chr2 (71-104)||(30990360-30990393)
chr2 (61-138)||(32364642-32364719)
chr2 (69-126)||(42852621-42852678)
chr2 (66-130)||(5045084-5045148)
chr2 (81-137)||(9478382-9478438)
chr2 (65-121)||(40759259-40759315)
chr2 (81-137)||(43141955-43142011)
[»] chr6 (20 HSPs)
chr6 (66-137)||(2460067-2460138)
chr6 (71-131)||(35070388-35070448)
chr6 (68-138)||(24973945-24974015)
chr6 (82-138)||(8420129-8420185)
chr6 (65-121)||(12111066-12111122)
chr6 (91-206)||(34538159-34538272)
chr6 (71-138)||(1432221-1432288)
chr6 (81-120)||(9667916-9667955)
chr6 (71-137)||(27894116-27894182)
chr6 (65-126)||(2457035-2457096)
chr6 (94-135)||(10353705-10353746)
chr6 (64-137)||(32171297-32171370)
chr6 (84-140)||(3155255-3155311)
chr6 (81-125)||(3738196-3738240)
chr6 (81-121)||(6742910-6742950)
chr6 (65-93)||(12811391-12811419)
chr6 (170-206)||(29957940-29957976)
chr6 (81-137)||(30865566-30865622)
chr6 (81-137)||(32917280-32917336)
chr6 (109-145)||(32997591-32997627)
[»] chr5 (26 HSPs)
chr5 (71-138)||(25720338-25720405)
chr5 (68-130)||(10771806-10771868)
chr5 (65-137)||(7550433-7550505)
chr5 (81-137)||(8090019-8090075)
chr5 (86-134)||(34975450-34975498)
chr5 (68-115)||(11615572-11615619)
chr5 (63-126)||(40335786-40335849)
chr5 (81-138)||(4855777-4855834)
chr5 (71-136)||(39257315-39257380)
chr5 (81-137)||(12407661-12407717)
chr5 (82-137)||(37611147-37611202)
chr5 (82-137)||(37787877-37787932)
chr5 (64-127)||(42034153-42034216)
chr5 (61-119)||(25705570-25705628)
chr5 (81-138)||(14980591-14980648)
chr5 (86-135)||(17259302-17259351)
chr5 (67-136)||(31723889-31723958)
chr5 (81-137)||(1084070-1084126)
chr5 (65-101)||(6938648-6938684)
chr5 (67-99)||(7674768-7674800)
chr5 (87-135)||(13781812-13781860)
chr5 (65-137)||(14599287-14599359)
chr5 (67-119)||(14706201-14706253)
chr5 (81-137)||(21782587-21782643)
chr5 (81-137)||(32849261-32849317)
chr5 (85-137)||(37968960-37969012)
[»] scaffold0199 (1 HSPs)
scaffold0199 (81-137)||(6893-6949)
[»] scaffold0050 (1 HSPs)
scaffold0050 (59-97)||(58865-58903)
[»] scaffold0141 (1 HSPs)
scaffold0141 (64-133)||(9692-9761)
[»] scaffold0020 (1 HSPs)
scaffold0020 (65-117)||(159888-159940)
[»] scaffold0110 (1 HSPs)
scaffold0110 (93-137)||(35775-35819)


Alignment Details
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 206
Target Start/End: Complemental strand, 1710926 - 1710746
Alignment:
Q  28 agataatacttcagtttatacaaatatctctatttaaggcctatttg-----gattagcttatttgagcttatctactaacacaatcacttgtgagactg 122  Q
    |||| |||||||| ||||||||||||||||| |||||||| ||||||     |||||||||||||||||||||||||||||| |||| ||||||| ||||    
T  1710926 agatgatacttcattttatacaaatatctctgtttaaggcttatttgaattagattagcttatttgagcttatctactaacataatcccttgtgacactg 1710827  T
Q  123 tttgagagagcttatataaaaacagctcacaacatcttcgtaaactgttttcagctaatttccataacctctctagaatagctt 206  Q
    ||||| | ||  | ||  ||||||||| ||||||||| | |||||||||||||||| |||||||||||||||||||||||||||    
T  1710826 tttga-aaag--tttaagaaaacagcttacaacatctccataaactgttttcagcttatttccataacctctctagaatagctt 1710746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 33894776 - 33894710
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||||||||||||||||||||| | | ||| || |||||||||||||||||| ||||||||||    
T  33894776 tttggattagcttatttgagcttatcaaatgacataagcacttgtgagactgtttgtgagagcttat 33894710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 8427169 - 8427107
Alignment:
Q  64 aggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 126  Q
    |||||||||||||||   ||||||||||||||||||||||| ||  |||||||||||||||||    
T  8427169 aggcctatttggattgatttatttgagcttatctactaacataagtacttgtgagactgtttg 8427107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 29363657 - 29363603
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgttt 125  Q
    |||||||| |||||||||| |||||||||||||| || |||||||||||||||||    
T  29363657 tttggattggcttatttgaacttatctactaacataagcacttgtgagactgttt 29363603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 25014097 - 25014032
Alignment:
Q  72 ttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||||| ||||||||  ||||||||| |||||| ||||||| |||||||||||||||| ||||    
T  25014097 ttggattagtttatttgaatttatctactgacacaagcacttgtaagactgtttgagagagtttat 25014032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 30751668 - 30751601
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 138  Q
    ||||||||| ||||||| | |||||||||| ||| || |||||||| ||||||||| |||||||||||    
T  30751668 tttggattaacttatttaaacttatctactgacataagcacttgtgcgactgtttgggagagcttata 30751601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 34754745 - 34754796
Alignment:
Q  85 tttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 136  Q
    |||||||||||||| | |||||| ||||| ||||||||||||||||||||||    
T  34754745 tttgagcttatctattgacacaaacacttatgagactgtttgagagagctta 34754796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 8094445 - 8094395
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagaga 131  Q
    ||||||||||||||||||||| || || ||||||||||||| |||||||||    
T  8094445 cttatttgagcttatctactagcataagcacttgtgagactatttgagaga 8094395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 23215004 - 23214944
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagaga 131  Q
    ||||||||  ||||||||| ||||||||||| || || ||||| |||||||||||||||||    
T  23215004 tttggattgacttatttgaccttatctactagcataaacacttatgagactgtttgagaga 23214944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 1418568 - 1418501
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 138  Q
    ||||||||  ||||||||||||||||||||  || || ||||| |||| ||||||| |||||||||||    
T  1418568 tttggattgacttatttgagcttatctactggcataagcacttatgaggctgtttgtgagagcttata 1418501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 12242382 - 12242327
Alignment:
Q  82 ttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||||| | ||||||| ||| || | |||||||||||||||||||||||||||    
T  12242382 ttatttgaggtgatctactgacataacctcttgtgagactgtttgagagagcttat 12242327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 3836600 - 3836670
Alignment:
Q  67 cctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||||||||  ||||||||||||||||||||  |  || ||||||||| |||||||| |||| |||||    
T  3836600 cctatttggattgccttatttgagcttatctactggcttaagcacttgtgaaactgtttgggagaacttat 3836670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 20547320 - 20547377
Alignment:
Q  80 gcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||| || ||||||| | ||| || ||||||||| |||||||||||||||||||    
T  20547320 gcttattttagtttatctaatgacataaacacttgtgatactgtttgagagagcttat 20547377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 389992 - 389936
Alignment:
Q  66 gcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactg 122  Q
    ||||||||||||| |||||||||||| ||||||||  || ||  |||||||||||||    
T  389992 gcctatttggattggcttatttgagcctatctacttccataagtacttgtgagactg 389936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 36598287 - 36598343
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||||| |||| ||||| ||| || || |||||||| |||||||||||||||||    
T  36598287 cttatttgaacttaactactgacataagcaattgtgagattgtttgagagagcttat 36598343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 39542231 - 39542287
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||||| |||||||||| || || |||||| ||||| |||| |||||||||||    
T  39542231 cttatttgagtttatctactagcataagcacttgcgagacagttttagagagcttat 39542287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 40734749 - 40734801
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagc 133  Q
    |||| ||||||||||||||||| | ||  |||||||||| |||||||||||||    
T  40734749 cttacttgagcttatctactaatataaatacttgtgagattgtttgagagagc 40734801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 32515351 - 32515428
Alignment:
Q  60 tttaaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||| ||||| ||||||||||| |||||||| ||||||||||||| || |||||||||||||||||| ||||||||||    
T  32515351 tttatggcctgtttggattagcatatttgagtttatctactaacataagcacttgtgagactgtttgggagagcttat 32515428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 26400127 - 26400061
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||| ||||||||||| |||| ||||| || ||| |||||||||| |||||||||||||||||    
T  26400127 tttggatttgcttatttgagattatatactagcataataacttgtgagattgtttgagagagcttat 26400061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 28467230 - 28467296
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||| |||| |||||||||||||| | |||||| ||||||||| |||||||| ||||||||||    
T  28467230 tttggattggcttgtttgagcttatctattgacacaaacacttgtgaaactgtttgggagagcttat 28467296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 9507382 - 9507314
Alignment:
Q  69 tatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||| ||| |||||||||||||||||||||| || |  || ||||||||||||||| ||||||||||    
T  9507382 tatttgaatttgcttatttgagcttatctactagcataggcatttgtgagactgtttgggagagcttat 9507314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 195
Target Start/End: Original strand, 31517670 - 31517783
Alignment:
Q  80 gcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgttttcagcta 179  Q
    |||||||||||||||| ||||  || || |||||||||||||||||| |||| ||  ||| |||||| ||||  |||| ||| ||| ||||||||||||     
T  31517670 gcttatttgagcttatttactggcataagcacttgtgagactgtttgggagaact--tatcaaaacaactcatgacatgttcataagctgttttcagctt 31517767  T
Q  180 atttccataacctctc 195  Q
    |||| ||||| |||||    
T  31517768 attttcataagctctc 31517783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 206
Target Start/End: Original strand, 10199330 - 10199462
Alignment:
Q  72 ttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgtt 171  Q
    |||||||  |||||||||||||||||||||||| || ||||||||| ||| |||| |||| ||   || |||| |||| |  |||| ||| |||  ||||    
T  10199330 ttggattgacttatttgagcttatctactaacataagcacttgtgacactatttgggagaact--catgaaaatagcttatgacatgttcataagttgtt 10199427  T
Q  172 ttcagctaatttccataacctctctagaatagctt 206  Q
    ||||||| |||| ||||| ||||||| ||||||||    
T  10199428 ttcagcttattttcataagctctctaaaatagctt 10199462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 43420404 - 43420341
Alignment:
Q  74 ggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||||||||||||||||||||||  ||| || |||||||||||||| ||| |||| |||||    
T  43420404 ggattagcttatttgagcttatctacagacataaacacttgtgagactgcttgtgagatcttat 43420341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 127
Target Start/End: Complemental strand, 3215877 - 3215815
Alignment:
Q  65 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttga 127  Q
    ||||||||||||||| |||||||||| |||| || ||||| || || ||||||||||||||||    
T  3215877 ggcctatttggattatcttatttgagtttatttattaacataagcatttgtgagactgtttga 3215815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 5157224 - 5157154
Alignment:
Q  68 ctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 138  Q
    |||||||||||  ||||||||| |||||||||  ||| || ||||||||| |||||||| |||||||||||    
T  5157224 ctatttggattgacttatttgaacttatctacggacataaacacttgtgaaactgtttgggagagcttata 5157154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 33527099 - 33527149
Alignment:
Q  65 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgt 115  Q
    |||| |||||||||| ||||||||||||||||| ||||||||| |||||||    
T  33527099 ggccaatttggattaccttatttgagcttatctgctaacacaagcacttgt 33527149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 2832120 - 2832075
Alignment:
Q  72 ttggattagcttatttgagcttatctactaacacaatcacttgtga 117  Q
    |||||||||||||||||||||||||||||| || || |||||||||    
T  2832120 ttggattagcttatttgagcttatctactagcataagcacttgtga 2832075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 7252538 - 7252607
Alignment:
Q  68 ctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||| ||||||||||||||||| ||||||||||| ||  ||||| || |||||||| |||| |||||    
T  7252538 ctatttgaattagcttatttgagctaatctactaacataagtacttgagaaactgtttgggagaacttat 7252607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 9602569 - 9602630
Alignment:
Q  65 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 126  Q
    ||||||||||||||  ||||| |||||||||||||||||  || ||||||||||||| ||||    
T  9602569 ggcctatttggattgacttatctgagcttatctactaacttaagcacttgtgagactatttg 9602630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 118
Target Start/End: Complemental strand, 33975713 - 33975676
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgag 118  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  33975713 cttatttgagcttatctactaacacaagcacttgtgag 33975676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 4363566 - 4363621
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||||||||||||||| ||| ||| |||||||||| |||||||||| ||||||    
T  4363566 cttatttgagcttatctacttacataat-acttgtgagattgtttgagagcgcttat 4363621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 15581404 - 15581348
Alignment:
Q  70 atttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 126  Q
    ||||||| |||||||||| |||||||||||| ||| || ||||||||||| ||||||    
T  15581404 atttggaatagcttattttagcttatctactgacataagcacttgtgagattgtttg 15581348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 24460311 - 24460379
Alignment:
Q  60 tttaaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgag 128  Q
    |||| ||||| ||||||||  ||||||||| |||||||||| |||  | ||||||||||||||||||||    
T  24460311 tttagggcctgtttggattgacttatttgaacttatctactgacatgagcacttgtgagactgtttgag 24460379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 28837278 - 28837334
Alignment:
Q  75 gattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagaga 131  Q
    |||| ||||||||||||||||||||| ||| || |||||| |||||||||| |||||    
T  28837278 gattggcttatttgagcttatctactgacataagcacttgagagactgtttaagaga 28837334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 4549462 - 4549529
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 138  Q
    |||||||| ||||||||||| |||||||||  || || || || |||||||||||| |||||||||||    
T  4549462 tttggattggcttatttgagattatctactggcataagcatttctgagactgtttgggagagcttata 4549529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 21002304 - 21002249
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 126  Q
    |||||||| |||||||||||||||||||||  || ||  |||||||||||||||||    
T  21002304 tttggattggcttatttgagcttatctacttgcataagaacttgtgagactgtttg 21002249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 49282634 - 49282684
Alignment:
Q  70 atttggattagcttatttgagcttatctactaacacaatcacttgtgagact 121  Q
    ||||||||||||||||||||| || |||||||||| || |||||||||||||    
T  49282634 atttggattagcttatttgag-ttgtctactaacataaacacttgtgagact 49282684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 3319867 - 3319933
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||||  ||||||||||||||||||||| || || || || |||||||| |||| |||||||||    
T  3319867 tttggattgacttatttgagcttatctactagcaaaagcaattatgagactgattgaaagagcttat 3319933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 206
Target Start/End: Complemental strand, 6279538 - 6279415
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgttttcagctaa 180  Q
    ||||||| |||||| ||||| ||| || |||||||| | |||||||||||||||  |||  |||||| | || |||| | | |||  ||||||||||  |    
T  6279538 cttatttcagcttaactactgacataagcacttgtgtggctgtttgagagagct--tatggaaacagttaaccacatgtccataagttgttttcagcgta 6279441  T
Q  181 tttccataacctctctagaatagctt 206  Q
    ||||||||| |||||||| |||||||    
T  6279440 tttccataagctctctaggatagctt 6279415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 195
Target Start/End: Complemental strand, 6292641 - 6292520
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgt 170  Q
    ||||||||  |||||||||||||||||||| ||| || ||||| ||||| |||||| ||||  ||   | ||||||||| |  |||| ||| ||| ||||    
T  6292641 tttggattgacttatttgagcttatctactgacataagcacttttgagattgtttgggagaattt---ttaaaacagcttatgacatgttcataagctgt 6292545  T
Q  171 tttcagctaatttccataacctctc 195  Q
    |||||||| |||| ||||| |||||    
T  6292544 tttcagcttattttcataagctctc 6292520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 6659829 - 6659763
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||||  ||||||| ||||||||||||| || || ||||||||||||| |||| || |||||||    
T  6659829 tttggattgacttattttagcttatctactagcataagcacttgtgagactatttgggatagcttat 6659763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 26866462 - 26866396
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||||  ||||||| |||||||||||||||||||  |||| ||||||| ||||  |||||||||    
T  26866462 tttggattgacttatttcagcttatctactaacacaaatacttctgagactatttggaagagcttat 26866396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 1565067 - 1565120
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtt 124  Q
    ||||||||| ||| |||||| |||||||||| ||||| ||||||||||| ||||    
T  1565067 tttggattaacttttttgagattatctactagcacaagcacttgtgagagtgtt 1565120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 14559123 - 14559058
Alignment:
Q  69 tatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagct 134  Q
    |||||||||||||||||||||| ||||||||| ||| || || ||| |||| |||||  |||||||    
T  14559123 tatttggattagcttatttgaggttatctactgacataaacatttgcgagattgtttaggagagct 14559058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 1662725 - 1662657
Alignment:
Q  68 ctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 136  Q
    |||||| |||| |||||||||||||||||||||| || ||  || || |||||| |||| |||||||||    
T  1662725 ctatttagattggcttatttgagcttatctactagcataagtacatgcgagactatttgcgagagctta 1662657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 11893512 - 11893568
Alignment:
Q  69 tatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgttt 125  Q
    ||||||||||  ||||||||| ||||||||||| |||||  |||||||||| |||||    
T  11893512 tatttggattgacttatttgaacttatctactagcacaaatacttgtgagattgttt 11893568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 16980942 - 16980886
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||||| ||||| ||| |||| ||  |||||||||||| |||||||||||||||    
T  16980942 cttatttgaacttatataccaacataagtacttgtgagactatttgagagagcttat 16980886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 22416829 - 22416861
Alignment:
Q  68 ctatttggattagcttatttgagcttatctact 100  Q
    ||||||||||| |||||||||||||||||||||    
T  22416829 ctatttggattggcttatttgagcttatctact 22416861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 27807254 - 27807198
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||||| ||| |||||| ||| || || |||| |||||||||||||||||||||    
T  27807254 cttatttgaacttttctactgacataagcatttgtaagactgtttgagagagcttat 27807198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 29793629 - 29793669
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagact 121  Q
    |||||||||||||||||||| ||| || |||||||||||||    
T  29793629 cttatttgagcttatctactgacataaacacttgtgagact 29793669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 34668811 - 34668740
Alignment:
Q  65 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||||||||| ||||||||||| |||| |||| |||  | |||||||||| |||||||  |||||||||    
T  34668811 ggcctatttggattggcttatttgagtttatgtactgacatgagcacttgtgag-ctgtttggaagagcttat 34668740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 37272529 - 37272581
Alignment:
Q  85 tttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||||||||||||  |  || ||||||||||| |||||||||||||||||    
T  37272529 tttgagcttatctactggcttaagcacttgtgagattgtttgagagagcttat 37272581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 137
Target Start/End: Original strand, 43371850 - 43371878
Alignment:
Q  109 cacttgtgagactgtttgagagagcttat 137  Q
    |||||||||||||||||||||||||||||    
T  43371850 cacttgtgagactgtttgagagagcttat 43371878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 22667558 - 22667486
Alignment:
Q  65 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||||| |||| ||||||||||||||||||||| ||| || |||||||||||||||||||||||| ||||    
T  22667558 ggcctatttcgattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttat 22667486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 22724197 - 22724125
Alignment:
Q  65 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||||| |||| ||||||||||||||||||||| ||| || |||||||||||||||||||||||| ||||    
T  22724197 ggcctatttcgattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttat 22724125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 50211884 - 50211818
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||||| ||||||| |||||||||||||||| || ||||||| ||||||||||||||| |||||    
T  50211884 tttggattaacttattttagcttatctactaacataagcacttgtaagactgtttgagagaacttat 50211818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 44014713 - 44014777
Alignment:
Q  65 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgaga 129  Q
    ||||| |||||||| ||||||||||| |||||||||| || || |||||||||||||||||||||    
T  44014713 ggcctgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttgaga 44014777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 27795938 - 27796000
Alignment:
Q  75 gattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||||||||||||||||||||||  || || ||||||||| ||||||| |||||||||||    
T  27795938 gattagcttatttgagcttatctactggcataagcacttgtgaaactgtttaagagagcttat 27796000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 11041160 - 11041213
Alignment:
Q  84 atttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||||||||||||||| | || |||||||| ||||||||||||||||||||    
T  11041160 atttgagcttatctactaagataagcacttgtgggactgtttgagagagcttat 11041213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 24158430 - 24158503
Alignment:
Q  64 aggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||| |||||||||| |||||||| |||||||||||| ||| ||  |||||||| |||||||| ||||||||||    
T  24158430 aggcatatttggattggcttatttaagcttatctactgacataagtacttgtgaaactgtttgcgagagcttat 24158503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 195
Target Start/End: Complemental strand, 48588797 - 48588684
Alignment:
Q  80 gcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgttttcagcta 179  Q
    |||||||||| ||||| |||| | |||| || |||||||| || |||||||||||||||||||  || || |  |||| ||| |||| ||||||||||||    
T  48588797 gcttatttgaacttatttacttatacaaacatttgtgagattgcttgagagagcttatataaa--caacttatgacatgttcttaaagtgttttcagcta 48588700  T
Q  180 atttccataacctctc 195  Q
    ||||||| || |||||    
T  48588699 atttccacaaactctc 48588684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 20210860 - 20210915
Alignment:
Q  82 ttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||||| ||||||||| ||| || ||||||||||||||||||||||| |||||    
T  20210860 ttatttgaggttatctactgacataaccacttgtgagactgtttgagagatcttat 20210915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 21872216 - 21872271
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 126  Q
    ||||||||| ||||||||| |||||||||| ||| || ||||||||||||||||||    
T  21872216 tttggattaacttatttgatcttatctactgacataagcacttgtgagactgtttg 21872271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 32663787 - 32663721
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||| ||||||||||||||||||||  ||| |  ||||||||||||| |||||||||| ||||    
T  32663787 tttggattggcttatttgagcttatctaccgacaaatacacttgtgagactatttgagagagtttat 32663721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 41057310 - 41057244
Alignment:
Q  65 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagaga 131  Q
    |||||||||| ||| ||||||||||||||||||||   || || |||||||||||||||||| ||||    
T  41057310 ggcctatttgaattggcttatttgagcttatctacatgcataagcacttgtgagactgtttgggaga 41057244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 1810102 - 1810061
Alignment:
Q  95 tctactaacacaatcacttgtgagactgtttgagagagctta 136  Q
    |||||||||| |||||||||||||||| ||||||||||||||    
T  1810102 tctactaacataatcacttgtgagactatttgagagagctta 1810061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 45590786 - 45590734
Alignment:
Q  85 tttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||| ||||||||||| || || |||||||||||||||||| ||||||||||    
T  45590786 tttgaacttatctactagcataagcacttgtgagactgtttgggagagcttat 45590734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 136
Target Start/End: Original strand, 5407369 - 5407440
Alignment:
Q  65 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 136  Q
    ||||| |||| ||||||||||||||||||||||| | | | |||||||||||| | ||||||  ||||||||    
T  5407369 ggcctgtttgcattagcttatttgagcttatctattgatataatcacttgtgatattgtttggcagagctta 5407440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 2413600 - 2413666
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||||  ||||||||| || ||||| || || |||||||||| || ||||||||||||||||||    
T  2413600 tttggatttacttatttgaactcatctattagcataatcacttgtaagtctgtttgagagagcttat 2413666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 27294497 - 27294432
Alignment:
Q  69 tatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagct 134  Q
    |||||| ||| ||||| ||||| ||||||| |  || || ||||||||||||||||||||||||||    
T  27294497 tatttgaattggcttacttgagtttatctattgtcataagcacttgtgagactgtttgagagagct 27294432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 49605772 - 49605833
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagag 132  Q
    |||||||||| ||||||||| |||||| ||| || ||  |||||||||| ||||||||||||    
T  49605772 tttggattagtttatttgagtttatcttctagcataagtacttgtgagagtgtttgagagag 49605833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 1395791 - 1395723
Alignment:
Q  68 ctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 136  Q
    ||||||| |||  |||||||||||||||||  | ||  || |||||| |||||||||||||||||||||    
T  1395791 ctatttgtattgacttatttgagcttatcttatgacgtaagcacttgcgagactgtttgagagagctta 1395723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 137
Target Start/End: Original strand, 14548680 - 14548708
Alignment:
Q  109 cacttgtgagactgtttgagagagcttat 137  Q
    |||||||||||||||||||||||||||||    
T  14548680 cacttgtgagactgtttgagagagcttat 14548708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 33880480 - 33880544
Alignment:
Q  73 tggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||| ||||||||||||||||||| | ||| ||||| ||| || |||||||| |||| |||||    
T  33880480 tggattggcttatttgagcttatctattgacataatcatttgagaaactgtttgggagaacttat 33880544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 50016041 - 50015969
Alignment:
Q  65 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||| |||||||| |||||| | || ||||||| |  || || ||||||||||||||||||||||| |||||    
T  50016041 ggcctctttggattggcttatctcagtttatctattggcataaacacttgtgagactgtttgagagaacttat 50015969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 9700156 - 9700086
Alignment:
Q  65 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctt 135  Q
    ||||| ||||||||| ||||||||||||||||||||| || || ||||||||||||| |||||||||||||    
T  9700156 ggcctgtttggattaacttatttgagcttatctactagcataaacacttgtgagactatttgagagagctt 9700086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 16162915 - 16162851
Alignment:
Q  65 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgaga 129  Q
    ||||| |||||||| ||||||||||| |||||||||| || || |||||||||||||||||||||    
T  16162915 ggcctgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttgaga 16162851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 43393685 - 43393760
Alignment:
Q  63 aaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 138  Q
    ||||||||||||||||  ||||||| ||||||||||||  || || ||||| |||||||||||| |||||||||||    
T  43393685 aaggcctatttggattgacttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttata 43393760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 1664508 - 1664452
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||||| |||||||||| || || |||||||||||||||||| ||||||||||    
T  1664508 cttatttgagtttatctactagcataaacacttgtgagactgtttgggagagcttat 1664452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 2487929 - 2487995
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||| ||||||||||| | ||||||| ||| || |||||||||||||||||| |||| |||||    
T  2487929 tttggattggcttatttgagttcatctactgacataagcacttgtgagactgtttgggagaacttat 2487995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 6496812 - 6496878
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||||  ||| |||||| ||||||||||||| ||||||||||| ||||||||| || |||||||    
T  6496812 tttggattgacttgtttgagtttatctactaacataatcacttgtgtgactgtttgggaaagcttat 6496878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 33553389 - 33553323
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||||||||||||||||||||||||  |||| || |||||||||  |||||||  |||||||||    
T  33553389 tttggattagcttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagcttat 33553323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 10488612 - 10488559
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtt 124  Q
    |||||||| ||||||||||||||||| ||||||| || ||| ||||||||||||    
T  10488612 tttggattggcttatttgagcttatcaactaacataaacacatgtgagactgtt 10488559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 24326167 - 24326114
Alignment:
Q  84 atttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||||||||||||  || || |||||||||||||||||| ||||||||||    
T  24326167 atttgagcttatctactggcataagcacttgtgagactgtttgggagagcttat 24326114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 14926903 - 14926967
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctt 135  Q
    ||||||||  ||||||||| ||||| ||||  || || |||||||||||||||||||||||||||    
T  14926903 tttggattgacttatttgaacttatttactggcataagcacttgtgagactgtttgagagagctt 14926967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 7918713 - 7918768
Alignment:
Q  82 ttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||| | ||||||||||| || || |||||||||||||||||| ||||||||||    
T  7918713 ttatttaaacttatctactagcataaacacttgtgagactgtttgggagagcttat 7918768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 8629261 - 8629199
Alignment:
Q  72 ttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagct 134  Q
    ||||||| |||||||| |||||| |||||  || || |||||||||||||| |||||||||||    
T  8629261 ttggatttgcttatttaagcttacctactggcataagcacttgtgagactgcttgagagagct 8629199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 10062062 - 10062128
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||| |||||||||||||||||||||||||  | |||||  || ||| |||| ||||||||||    
T  10062062 tttggattggcttatttgagcttatctactaacatcaacacttacgaaactatttgggagagcttat 10062128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 44236739 - 44236797
Alignment:
Q  66 gcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtt 124  Q
    |||| ||||||||| |||||||||| |||||||||  || || ||||||||||||||||    
T  44236739 gcctgtttggattaccttatttgagtttatctactggcataagcacttgtgagactgtt 44236797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 100
Target Start/End: Original strand, 9130240 - 9130269
Alignment:
Q  71 tttggattagcttatttgagcttatctact 100  Q
    ||||||||||||||||||||||||||||||    
T  9130240 tttggattagcttatttgagcttatctact 9130269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 21130748 - 21130695
Alignment:
Q  84 atttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||||||| | || ||| ||  ||||||||||||||||||||||||||||    
T  21130748 atttgagcttatgtgctgacataaatacttgtgagactgtttgagagagcttat 21130695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 43717849 - 43717882
Alignment:
Q  65 ggcctatttggattagcttatttgagcttatcta 98  Q
    |||||||||||||| |||||||||||||||||||    
T  43717849 ggcctatttggattggcttatttgagcttatcta 43717882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 2606198 - 2606138
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagaga 131  Q
    ||||||||  |||||| ||||||||||||| ||| ||||||| |||| |||||||| ||||    
T  2606198 tttggattgacttattcgagcttatctactgacataatcactagtgaaactgtttgggaga 2606138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 10075468 - 10075540
Alignment:
Q  65 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||| ||| ||||| |||||||||| |||||||||  || ||  ||||| |||||||||| |||||||||||    
T  10075468 ggcctgtttcgattaacttatttgagtttatctactggcataaatacttgcgagactgtttaagagagcttat 10075540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 18331863 - 18331815
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgaga 119  Q
    ||||||||  ||||||||| |||||||||||||| || |||||||||||    
T  18331863 tttggattgacttatttgatcttatctactaacataagcacttgtgaga 18331815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 30191056 - 30191128
Alignment:
Q  65 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||| |||| || |||||||||||| ||||||| |  || || ||||||| |||||||||| ||||||||||    
T  30191056 ggcctgtttgcataagcttatttgagtttatctattggcataagcacttgttagactgtttgggagagcttat 30191128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 31884872 - 31884916
Alignment:
Q  82 ttatttgagcttatctactaacacaatcacttgtgagactgtttg 126  Q
    |||||||||||||||||||| || || ||||||||||| ||||||    
T  31884872 ttatttgagcttatctactagcataagcacttgtgagagtgtttg 31884916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 43393625 - 43393661
Alignment:
Q  63 aaggcctatttggattagcttatttgagcttatctac 99  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  43393625 aaggcctatttcgattggcttatttgagcttatctac 43393661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 2996731 - 2996656
Alignment:
Q  62 taaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||||||| ||||||||||||||| ||||| || | ||| || ||||| |||||||||||||||||||||||    
T  2996731 taaggcctatttagattagcttatttgaacttatttattgacataagcacttttgagactgtttgagagagcttat 2996656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 66 - 137
Target Start/End: Original strand, 27123268 - 27123339
Alignment:
Q  66 gcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||| ||||||||| |||||||||||||||  |||| || ||  ||||||||||||||||||||||||||||    
T  27123268 gcctgtttggattaacttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttat 27123339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 18628486 - 18628540
Alignment:
Q  83 tatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||||||||||||| ||| || |||||||||||||||||| ||||||||||    
T  18628486 tatttgagcttatctactgacataaacacttgtgagactgtttgggagagcttat 18628540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 4691986 - 4691939
Alignment:
Q  82 ttatttgagcttatctactaacacaatcacttgtgagactgtttgaga 129  Q
    |||||||||||||||||||  ||||||||||||||||||| |||||||    
T  4691986 ttatttgagcttatctactgtcacaatcacttgtgagactatttgaga 4691939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 19429391 - 19429457
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||| |||||||||||||||| ||||   | || |||||||||||||||||| ||||||||||    
T  19429391 tttggattggcttatttgagcttatttactggtataaacacttgtgagactgtttgggagagcttat 19429457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 25896935 - 25896866
Alignment:
Q  69 tatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 138  Q
    ||||||||||  |||||||||| |||||||||| ||  | |||||||||||||||||  |||||||||||    
T  25896935 tatttggattcacttatttgagtttatctactagcattagcacttgtgagactgtttaggagagcttata 25896866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 46860066 - 46860001
Alignment:
Q  72 ttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||  ||||||||| |||||||| | ||| || ||||||||| |||||||||||||||||||    
T  46860066 ttggattgacttatttgaacttatctattcacataagcacttgtgaaactgtttgagagagcttat 46860001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 18512440 - 18512500
Alignment:
Q  75 gattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctt 135  Q
    ||||| |||||||||||||||||||| ||| || |||||||||||||  |||| |||||||    
T  18512440 gattaacttatttgagcttatctactgacataaacacttgtgagactagttgaaagagctt 18512500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 4072016 - 4071961
Alignment:
Q  82 ttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||||| ||| ||| ||| | || |||||||||||||||||||||||||||||    
T  4072016 ttatttgaggttaactattaatataagcacttgtgagactgtttgagagagcttat 4071961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 17822776 - 17822815
Alignment:
Q  61 ttaaggcctatttggattagcttatttgagcttatctact 100  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  17822776 ttaaggcctgtttggattaacttatttgagcttatctact 17822815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 21157915 - 21157852
Alignment:
Q  73 tggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 136  Q
    |||||| ||||||||||||| ||||||| ||| || ||||||| ||||||||||  ||||||||    
T  21157915 tggatttgcttatttgagctcatctactgacataagcacttgtaagactgtttggaagagctta 21157852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 1017176 - 1017122
Alignment:
Q  72 ttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 126  Q
    |||||||  |||||||||||| ||||||| ||| || ||||||||||||||||||    
T  1017176 ttggattgacttatttgagctaatctactgacataaacacttgtgagactgtttg 1017122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 17975249 - 17975323
Alignment:
Q  62 taaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 136  Q
    ||||| || ||||||||  ||||||||||||||||||| ||||||| ||||||| | ||| ||||  ||||||||    
T  17975249 taagggctgtttggattgacttatttgagcttatctaccaacacaaacacttgtcaaactatttggaagagctta 17975323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 101
Target Start/End: Original strand, 22845623 - 22845657
Alignment:
Q  67 cctatttggattagcttatttgagcttatctacta 101  Q
    |||||||||||| ||||||||||||||||||||||    
T  22845623 cctatttggattggcttatttgagcttatctacta 22845657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 56186819 - 56186869
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagact 121  Q
    ||||||||| |||||| ||| ||||||||||||| || |||||||||||||    
T  56186819 tttggattaacttattcgagtttatctactaacataaacacttgtgagact 56186869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 2977897 - 2977962
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 136  Q
    ||||||||| |||||||||||| ||||| |  || || ||| ||||||||||||| ||||||||||    
T  2977897 tttggattaacttatttgagctgatctagtggcataagcacgtgtgagactgtttaagagagctta 2977962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 19394864 - 19394897
Alignment:
Q  65 ggcctatttggattagcttatttgagcttatcta 98  Q
    |||||||||||||| |||||||||||||||||||    
T  19394864 ggcctatttggattggcttatttgagcttatcta 19394897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 32420976 - 32421029
Alignment:
Q  68 ctatttggattagcttatttgagcttatctactaacacaatcacttgtgagact 121  Q
    |||||||||||  |||||||||||||| |||||| || || |||||||||||||    
T  32420976 ctatttggattgacttatttgagcttacctactagcataagcacttgtgagact 32421029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 45104307 - 45104344
Alignment:
Q  61 ttaaggcctatttggattagcttatttgagcttatcta 98  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  45104307 ttaaggcctgtttggattagcttatttgagcatatcta 45104344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 56007814 - 56007765
Alignment:
Q  85 tttgagcttatctactaacacaatcacttgtgagactgtttgagagagct 134  Q
    ||||| ||||||||||  || |||||||||| ||||||||||||||||||    
T  56007814 tttgaacttatctactggcataatcacttgtaagactgtttgagagagct 56007765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 33534100 - 33534156
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||||||||||||| | ||| ||  |||||||||| | |||||||||||||||    
T  33534100 cttatttgagcttatctagtgacataagtacttgtgagagtatttgagagagcttat 33534156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 50298653 - 50298609
Alignment:
Q  82 ttatttgagcttatctactaacacaatcacttgtgagactgtttg 126  Q
    |||||| |||||||||||| ||| || ||||||||||||||||||    
T  50298653 ttattttagcttatctactgacataagcacttgtgagactgtttg 50298609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 131
Target Start/End: Original strand, 28803439 - 28803511
Alignment:
Q  59 atttaaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagaga 131  Q
    ||||||||||||||||||||  |||||||||||||||||||   || || ||| |||||||||||||||||||    
T  28803439 atttaaggcctatttggattgacttatttgagcttatctaccggcataagcacatgtgagactgtttgagaga 28803511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 11514045 - 11513979
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||| | ||||||||| |||||||||| || || ||||||||||||||||| |||||||||||    
T  11514045 tttggattggtttatttgagattatctactagcataagcacttgtgagactgttttagagagcttat 11513979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 41170759 - 41170704
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 126  Q
    |||||||| ||||||||||| ||||||||||||| || ||||||||||||| ||||    
T  41170759 tttggattggcttatttgagtttatctactaacataaacacttgtgagactatttg 41170704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 11063342 - 11063292
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagact 121  Q
    ||||||||||||||||||| ||||||||||||||||| || ||| ||||||    
T  11063342 tttggattagcttatttgaacttatctactaacacaagcatttgcgagact 11063292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 22878247 - 22878181
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||||  |||||||||||||||| ||| ||| || |||||||||||||||||| |||| |||||    
T  22878247 tttggattgacttatttgagcttatccactgacataagcacttgtgagactgtttgggagaccttat 22878181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 137
Target Start/End: Complemental strand, 37474921 - 37474848
Alignment:
Q  63 aaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||||||||||||||||||  ||| ||||||| | ||| || ||||| ||||||| |||||||||||||||    
T  37474921 aaggcctatttggattagcttatccgagtttatcta-ttacataaacacttatgagactctttgagagagcttat 37474848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 188
Target Start/End: Original strand, 43456628 - 43456743
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgt 170  Q
    ||||||||  ||||||||| ||||| |||| ||| || ||||||| ||||||||||| ||||||| |   |||||| ||||  |||| | | ||||||||    
T  43456628 tttggatttacttatttgaacttatttactcacataaacacttgtaagactgtttgaaagagcttgtg--aaaacaactcatgacatgtccataaactgt 43456725  T
Q  171 tttcagctaatttccata 188  Q
    |||||||| |||||||||    
T  43456726 tttcagcttatttccata 43456743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 13867015 - 13866962
Alignment:
Q  83 tatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 136  Q
    ||||||||||||||||||  || || ||||||||||||||||||||||| ||||    
T  13867015 tatttgagcttatctactgccataaacacttgtgagactgtttgagagaactta 13866962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 6548047 - 6547972
Alignment:
Q  62 taaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||| || ||||||||  ||||||  ||||||||||||| || ||  ||||||||||||||||||| ||||||||    
T  6548047 taaggtctgtttggattgacttattcaagcttatctactagcataagaacttgtgagactgtttgagggagcttat 6547972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 15370236 - 15370299
Alignment:
Q  63 aaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 126  Q
    ||||||| ||||||||  ||||||||||||||||||||  || || || |||||||||||||||    
T  15370236 aaggcctgtttggattgacttatttgagcttatctactggcataagcatttgtgagactgtttg 15370299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 40944062 - 40944007
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 126  Q
    |||||||||||||||||||| ||||||| | ||| || ||||||||| ||||||||    
T  40944062 tttggattagcttatttgagtttatctaatgacataagcacttgtgaaactgtttg 40944007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 3078520 - 3078594
Alignment:
Q  62 taaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 136  Q
    ||||| || ||||||||  ||||||||||||||||||| ||||||| ||||||| | ||| ||||  ||||||||    
T  3078520 taagggctgtttggattgacttatttgagcttatctaccaacacaaacacttgtcaaactatttggaagagctta 3078594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 4350839 - 4350773
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||| |||||||||||||| |||||| ||| || |||||  |||| ||||||||||| |||||    
T  4350839 tttggattggcttatttgagcttctctactgacataagcacttaagagattgtttgagagaacttat 4350773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 25609936 - 25609894
Alignment:
Q  80 gcttatttgagcttatctactaacacaatcacttgtgagactg 122  Q
    ||||||||||||||||||||||||| ||  |||||||||||||    
T  25609936 gcttatttgagcttatctactaacataagaacttgtgagactg 25609894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 33981270 - 33981220
Alignment:
Q  73 tggattagcttatttgagcttatctactaacacaatcacttgtgagactgt 123  Q
    |||||||||||||||||||||| |||||| |  || |||||||||||||||    
T  33981270 tggattagcttatttgagcttacctactagcttaagcacttgtgagactgt 33981220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 40158870 - 40158816
Alignment:
Q  68 ctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactg 122  Q
    ||||||||||| |||||||||||| |||||||| ||| ||  |||||||||||||    
T  40158870 ctatttggattggcttatttgagcatatctactgacataagaacttgtgagactg 40158816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 9996877 - 9996820
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 138  Q
    |||||||||||||||| |||| || ||  ||||||||||||| ||| |||||||||||    
T  9996877 cttatttgagcttatcaactagcataagtacttgtgagactgcttgggagagcttata 9996820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 104
Target Start/End: Original strand, 30990360 - 30990393
Alignment:
Q  71 tttggattagcttatttgagcttatctactaaca 104  Q
    |||||||| |||||||||||||||||||||||||    
T  30990360 tttggattggcttatttgagcttatctactaaca 30990393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 32364642 - 32364719
Alignment:
Q  61 ttaaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 138  Q
    ||||| ||||||||||||  ||||||||||  ||||||||| || || || |||||| | |||||| |||||||||||    
T  32364642 ttaagccctatttggattgacttatttgagaatatctactatcataagcatttgtgaaattgtttgggagagcttata 32364719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 42852621 - 42852678
Alignment:
Q  69 tatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 126  Q
    |||||||||| |||||||||| ||||||| ||  || || ||||||||||||||||||    
T  42852621 tatttggatttgcttatttgaacttatctgctggcataagcacttgtgagactgtttg 42852678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 5045084 - 5045148
Alignment:
Q  66 gcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagag 130  Q
    |||| |||| |||||| ||||||| ||||| |||| |||  | ||||||||||||||||||||||    
T  5045084 gcctgtttgaattagcgtatttgaacttatttactgacaacaacacttgtgagactgtttgagag 5045148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 9478438 - 9478382
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||||| ||||||||| |||| ||  ||||||| ||||||||||||||| ||||    
T  9478438 cttatttgaacttatctaccaacataagtacttgtgtgactgtttgagagagtttat 9478382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 40759315 - 40759259
Alignment:
Q  65 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagact 121  Q
    ||||| ||||||||  |||||||||||||||||| | ||| || |||||||||||||    
T  40759315 ggcctgtttggattgccttatttgagcttatctattgacataagcacttgtgagact 40759259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 43142011 - 43141955
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||||||||||||||||||| || || |||||| || |||||| || ||||||    
T  43142011 cttatttgagcttatctactaacataagcaattgtgaaacagtttgacagcgcttat 43141955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 66 - 137
Target Start/End: Original strand, 2460067 - 2460138
Alignment:
Q  66 gcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||| ||||||||| |||||||||||||||  |||| || ||  ||||||||||||||||||||||||||||    
T  2460067 gcctgtttggattaacttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttat 2460138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 35070388 - 35070448
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagaga 131  Q
    ||||||||  |||||||||||||||||||||||| || |||||||| ||||||||| ||||    
T  35070388 tttggattttcttatttgagcttatctactaacataagcacttgtgggactgtttgggaga 35070448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 24973945 - 24974015
Alignment:
Q  68 ctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 138  Q
    |||||||||||||||||||||| ||||||| || ||| || ||||||| ||| ||||||  ||||||||||    
T  24973945 ctatttggattagcttatttgaacttatctgctgacataagcacttgtaagattgtttggtagagcttata 24974015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 8420129 - 8420185
Alignment:
Q  82 ttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 138  Q
    ||||||||||||||||| | ||| || |||||||||||||||| | |||||||||||    
T  8420129 ttatttgagcttatctattgacataaacacttgtgagactgttagtgagagcttata 8420185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 12111122 - 12111066
Alignment:
Q  65 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagact 121  Q
    ||||||||||||||  ||||||||||||||||||||| || || |||||| ||||||    
T  12111122 ggcctatttggattgacttatttgagcttatctactagcataagcacttgcgagact 12111066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 206
Target Start/End: Original strand, 34538159 - 34538272
Alignment:
Q  91 cttatctactaacacaatcacttgtgagactgtttgagagagcttatataaaaacagctcacaacatcttcgtaaactgttttcagctaatttccataac 190  Q
    |||||||||| | | || ||||||||||||| ||||||||| ||  ||||||||||||| || |||| | | |||||| ||||||||| ||||  | ||     
T  34538159 cttatctactcatataagcacttgtgagactatttgagagatct--tataaaaacagcttacgacatgtccataaactattttcagcttatttatacaaa 34538256  T
Q  191 ctctctagaatagctt 206  Q
    |||||||| |||||||    
T  34538257 ctctctaggatagctt 34538272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 1432288 - 1432221
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 138  Q
    |||||||| | |||||| |||||||||||| ||| || || |||| |||||||||||||||| |||||    
T  1432288 tttggattggtttattttagcttatctactcacataagcaattgttagactgtttgagagagtttata 1432221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 120
Target Start/End: Original strand, 9667916 - 9667955
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagac 120  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  9667916 cttatttgagcttatctcctaacacaagcacttgtgagac 9667955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 27894182 - 27894116
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||||||| ||||||||||| ||||  ||| ||  ||||||||||||||||||  ||||||||    
T  27894182 tttggattagctcatttgagcttacctacggacataagtacttgtgagactgtttgaacgagcttat 27894116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 2457096 - 2457035
Alignment:
Q  65 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 126  Q
    ||||| |||||||| ||||||||||| ||||||||  ||| || ||||||| ||||||||||    
T  2457096 ggcctgtttggattggcttatttgagattatctaccgacataagcacttgtaagactgtttg 2457035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 10353705 - 10353746
Alignment:
Q  94 atctactaacacaatcacttgtgagactgtttgagagagctt 135  Q
    ||||||||||| || |||||||||||||||||| ||||||||    
T  10353705 atctactaacataagcacttgtgagactgtttgggagagctt 10353746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 32171297 - 32171370
Alignment:
Q  64 aggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||| ||||||||  ||||||| ||||||  || | ||| || |||||| ||||||||||||||||||||||    
T  32171297 aggcctgtttggattgtcttatttcagcttaagtattgacataagcacttgcgagactgtttgagagagcttat 32171370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 3155311 - 3155255
Alignment:
Q  84 atttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttatata 140  Q
    ||||||||||||||||  ||| ||||||||| |||||  ||||| ||||||||||||    
T  3155311 atttgagcttatctacagacataatcacttgagagaccatttgaaagagcttatata 3155255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 3738240 - 3738196
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagactgttt 125  Q
    |||||||||| |||||||||| || || |||||||||||||||||    
T  3738240 cttatttgagtttatctactagcataagcacttgtgagactgttt 3738196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 6742950 - 6742910
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagact 121  Q
    |||||||||||||| |||||| || ||||||||||||||||    
T  6742950 cttatttgagcttacctactagcataatcacttgtgagact 6742910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 12811419 - 12811391
Alignment:
Q  65 ggcctatttggattagcttatttgagctt 93  Q
    |||||||||||||||||||||||||||||    
T  12811419 ggcctatttggattagcttatttgagctt 12811391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 29957940 - 29957976
Alignment:
Q  170 ttttcagctaatttccataacctctctagaatagctt 206  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  29957940 ttttcagcttatttccataagctctctagaatagctt 29957976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 30865622 - 30865566
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||||||||||||  ||||| || ||||||| |||| |||| |||||||||||    
T  30865622 cttatttgagcttatctgttaacataaacacttgttagacagtttaagagagcttat 30865566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 32917336 - 32917280
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||| ||||||| ||||||  | || |||||||||||||||||| ||||||||||    
T  32917336 cttattagagcttacctactagaataaacacttgtgagactgtttgggagagcttat 32917280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 32997627 - 32997591
Alignment:
Q  109 cacttgtgagactgtttgagagagcttatataaaaac 145  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  32997627 cacttgtgagaccgtttgagagagcttataaaaaaac 32997591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 25720338 - 25720405
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 138  Q
    |||| ||||||||||||||| |||||||||  || || ||||||||||||||| ||||||||||||||    
T  25720338 tttgaattagcttatttgaggttatctactggcataagcacttgtgagactgtctgagagagcttata 25720405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 10771806 - 10771868
Alignment:
Q  68 ctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagag 130  Q
    ||||||||||| |||||||||||||||||||||  || || ||||||||||| ||||||||||    
T  10771806 ctatttggattggcttatttgagcttatctactggcataagcacttgtgagattgtttgagag 10771868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 7550433 - 7550505
Alignment:
Q  65 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||| ||| |||| | ||||||||||||||| ||| ||| ||| |||||||||||| |||||||||||||||    
T  7550433 ggcctgttttgattggtttatttgagcttatccactgacataattacttgtgagactctttgagagagcttat 7550505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 8090075 - 8090019
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||||| ||||||||||||||||| |||| | |||||| |||||||||||||||    
T  8090075 cttatttgaacttatctactaacacaagcactcgcgagactatttgagagagcttat 8090019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 34975498 - 34975450
Alignment:
Q  86 ttgagcttatctactaacacaatcacttgtgagactgtttgagagagct 134  Q
    ||||||||||||||||||| |||||||| ||||||||||||| ||||||    
T  34975498 ttgagcttatctactaacataatcacttatgagactgtttgaaagagct 34975450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 11615572 - 11615619
Alignment:
Q  68 ctatttggattagcttatttgagcttatctactaacacaatcacttgt 115  Q
    ||||||||||| ||||||||||||||||||||||||| || |||||||    
T  11615572 ctatttggattggcttatttgagcttatctactaacataaacacttgt 11615619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 40335786 - 40335849
Alignment:
Q  63 aaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttg 126  Q
    ||||||| ||||||||  |||||||||| |||||||||  ||||| ||||||||||||||||||    
T  40335786 aaggcctgtttggattgacttatttgagtttatctactcgcacaaacacttgtgagactgtttg 40335849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 4855834 - 4855777
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 138  Q
    ||||||||||||||| || | ||  || ||||||||||||||||||||||||||||||    
T  4855834 cttatttgagcttatataatgacttaaacacttgtgagactgtttgagagagcttata 4855777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 39257315 - 39257380
Alignment:
Q  71 tttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 136  Q
    |||||| | |||||||| |||||||||||||||| || ||||||||||||||| || || ||||||    
T  39257315 tttggactggcttatttaagcttatctactaacataagcacttgtgagactgtgtgcgaaagctta 39257380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 12407661 - 12407717
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||||| |||||||| | ||| || |||||||||||| ||||||||||||||||    
T  12407661 cttatttgaacttatctattgacataaacacttgtgagacggtttgagagagcttat 12407717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 37611147 - 37611202
Alignment:
Q  82 ttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||| ||||||||||  |||||  |||||||||| |||||||||||||||||    
T  37611147 ttatttgaacttatctactggcacaagtacttgtgagattgtttgagagagcttat 37611202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 37787877 - 37787932
Alignment:
Q  82 ttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||| ||||||||||  |||||  |||||||||| |||||||||||||||||    
T  37787877 ttatttgaacttatctactggcacaagtacttgtgagattgtttgagagagcttat 37787932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 42034216 - 42034153
Alignment:
Q  64 aggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttga 127  Q
    |||||| |||||||||||||||||||||||| ||||| ||| || ||||| ||  |||||||||    
T  42034216 aggcctgtttggattagcttatttgagcttacctactgacataagcacttatgcaactgtttga 42034153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 25705570 - 25705628
Alignment:
Q  61 ttaaggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgaga 119  Q
    |||| |||| |||||||||  |||||||| |||||||||||||| || |||||||||||    
T  25705570 ttaaagcctgtttggattaaattatttgaacttatctactaacataagcacttgtgaga 25705628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 14980648 - 14980591
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttata 138  Q
    ||||||||||||||||||||  || || ||||   |||||||||||||||||||||||    
T  14980648 cttatttgagcttatctactggcataagcactatagagactgtttgagagagcttata 14980591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 17259351 - 17259302
Alignment:
Q  86 ttgagcttatctactaacacaatcacttgtgagactgtttgagagagctt 135  Q
    ||||||||||||||||||| || |||||||||||||  ||||| ||||||    
T  17259351 ttgagcttatctactaacataagcacttgtgagacttgttgagtgagctt 17259302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 31723958 - 31723889
Alignment:
Q  67 cctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagctta 136  Q
    ||||||||||||  ||||||||||||||| ||||| || || ||||| ||||||| ||||  ||||||||    
T  31723958 cctatttggattgacttatttgagcttatgtactagcataaacacttatgagactatttgtaagagctta 31723889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 1084070 - 1084126
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||||| |||| |||| ||| || ||||||||| |||||||||||||| ||||    
T  1084070 cttatttgagtttatttactgacataagcacttgtgaaactgtttgagagagtttat 1084126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 6938648 - 6938684
Alignment:
Q  65 ggcctatttggattagcttatttgagcttatctacta 101  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  6938648 ggcctgtttggattaggttatttgagcttatctacta 6938684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 7674800 - 7674768
Alignment:
Q  67 cctatttggattagcttatttgagcttatctac 99  Q
    |||||||||||| ||||||||||||||||||||    
T  7674800 cctatttggattggcttatttgagcttatctac 7674768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 13781812 - 13781860
Alignment:
Q  87 tgagcttatctactaacacaatcacttgtgagactgtttgagagagctt 135  Q
    |||||||||||||||||| ||  |||||||||||||||||  |||||||    
T  13781812 tgagcttatctactaacataagtacttgtgagactgtttggtagagctt 13781860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 14599287 - 14599359
Alignment:
Q  65 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||| ||||||||   |||||||| ||||| ||||| || || ||||||| ||| |||||||||||||||||    
T  14599287 ggcctgtttggattcagttatttgaacttatttactagcataaacacttgtaagattgtttgagagagcttat 14599359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 14706201 - 14706253
Alignment:
Q  67 cctatttggattagcttatttgagcttatctactaacacaatcacttgtgaga 119  Q
    ||||||||||||  |||||||||||||| ||||| ||| || |||||||||||    
T  14706201 cctatttggattgacttatttgagcttacctactgacataaacacttgtgaga 14706253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 21782587 - 21782643
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||||  |||||||||  || || |||||||||| ||||||||||||||||||    
T  21782587 cttatttgaaattatctactggcataaacacttgtgaggctgtttgagagagcttat 21782643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 32849317 - 32849261
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    ||||||| ||||||||||||| || || |||||||||| ||||||| |||| |||||    
T  32849317 cttatttaagcttatctactatcataagcacttgtgaggctgtttgggagaacttat 32849261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 37969012 - 37968960
Alignment:
Q  85 tttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||||||||||| ||| ||  |||||||| ||||||||||||| |||||    
T  37969012 tttgagcttatctactgacataagtacttgtgaaactgtttgagagatcttat 37968960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 6949 - 6893
Alignment:
Q  81 cttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||||| |||||||||| || || |||||||||||||||||| ||||||||||    
T  6949 cttatttgagtttatctactagcataaacacttgtgagactgtttgggagagcttat 6893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 58903 - 58865
Alignment:
Q  59 atttaaggcctatttggattagcttatttgagcttatct 97  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  58903 atttagggcctatttggattagcttatttgagcttatct 58865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 9692 - 9761
Alignment:
Q  64 aggcctatttggattagcttatttgagcttatctactaacacaatcacttgtgagactgtttgagagagc 133  Q
    |||||||||| ||||   ||||||||| ||||||||||||| ||  ||||||||||||||||| ||||||    
T  9692 aggcctatttagattgatttatttgagtttatctactaacataaatacttgtgagactgtttgggagagc 9761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 159888 - 159940
Alignment:
Q  65 ggcctatttggattagcttatttgagcttatctactaacacaatcacttgtga 117  Q
    ||||| |||||||| ||||||||||||||||||||||| | || |||||||||    
T  159888 ggcctgtttggattggcttatttgagcttatctactaatataaacacttgtga 159940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 35775 - 35819
Alignment:
Q  93 tatctactaacacaatcacttgtgagactgtttgagagagcttat 137  Q
    |||||||| ||| ||||||| || |||||||||||||||||||||    
T  35775 tatctactgacataatcactcgttagactgtttgagagagcttat 35819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University