View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7036_low_4 (Length: 502)
Name: NF7036_low_4
Description: NF7036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7036_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Complemental strand, 12551114 - 12550619
Alignment:
| Q |
1 |
atataatggttttagactagtctaaggtccaatctcttgcgaactcacaagtcacaaccctcttttaaagcacacttgacccaaagaccaatccacctgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12551114 |
atataatggttttagactagtctaaggtccaatctcttgcgaactcacaagtcacaaccctcttttaaagcacacttgacccaaagaccaatccacctgg |
12551015 |
T |
|
| Q |
101 |
cataagattcttgaaatttgtaacgcctcaacgagttcaatgaccttgaacggctgcaagagcacaccattaatgaagggtgtcatatgtaacgttcctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12551014 |
cataagattcttgaaatttgtaacgcctcaacgagttcaatgccctcgaacggctgcaagagcacaccattaatgaagggtgtcatatgtaacgttcctc |
12550915 |
T |
|
| Q |
201 |
cctttacgcatcaacagctcctttctaggattgtataaataatccttctcacaacaatgcaaggtacacaatttctcaactcgtaaacctcacactcttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12550914 |
cctttacgcatcaacagctcctttctaggattgtataaatactctttctcacaacaatgcaaggtacacaatttctcaactcgtaaacctcacactcttt |
12550815 |
T |
|
| Q |
301 |
ggtcacttactatcttagacgtcagagtgctccaatccagataactttctcgatctatccagatcaataatgactttctttcatatcatagatcgacacg |
400 |
Q |
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|
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
12550814 |
ggtcacttactatcttatacgtcagagtgctccaatccagataactttctcggtctatccagatcaataatgactttctttcatatcatagatcgacatg |
12550715 |
T |
|
| Q |
401 |
tgtgtgaccataattgttaccccaatttaaaaccttacttttcataattaaaatgagagattaccaagccatacgtaccttctgcacaggttctgc |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
12550714 |
tgtgtgaccataattgttaccccaatttaaaaccttacttttcataattaaaatgagagattaccaagccatacgtaccttctgcaaaggatctgc |
12550619 |
T |
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