View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7036_low_9 (Length: 388)

Name: NF7036_low_9
Description: NF7036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7036_low_9
NF7036_low_9
[»] chr6 (64 HSPs)
chr6 (18-380)||(27604520-27604882)
chr6 (43-380)||(27718219-27718556)
chr6 (43-380)||(27610842-27611179)
chr6 (18-377)||(27592835-27593194)
chr6 (18-380)||(27678956-27679318)
chr6 (18-378)||(27677429-27677789)
chr6 (18-378)||(27706217-27706577)
chr6 (50-380)||(27698341-27698671)
chr6 (18-380)||(26802452-26802814)
chr6 (52-380)||(28781149-28781477)
chr6 (154-380)||(27724796-27725022)
chr6 (52-380)||(28786288-28786616)
chr6 (52-380)||(28792409-28792737)
chr6 (61-375)||(26884178-26884494)
chr6 (58-348)||(27427461-27427751)
chr6 (52-351)||(26861655-26861951)
chr6 (200-380)||(26646489-26646669)
chr6 (200-380)||(26752457-26752637)
chr6 (74-380)||(27531068-27531374)
chr6 (154-378)||(31284300-31284524)
chr6 (200-380)||(25579729-25579909)
chr6 (200-380)||(26655999-26656179)
chr6 (200-380)||(26761970-26762150)
chr6 (200-354)||(28139577-28139731)
chr6 (176-380)||(25481752-25481956)
chr6 (200-380)||(26142875-26143055)
chr6 (166-378)||(28226962-28227174)
chr6 (209-351)||(26823879-26824021)
chr6 (200-336)||(26623030-26623166)
chr6 (200-336)||(26729008-26729144)
chr6 (154-374)||(28242820-28243040)
chr6 (166-374)||(26341894-26342105)
chr6 (200-380)||(25538550-25538730)
chr6 (166-309)||(26848741-26848884)
chr6 (186-380)||(26048855-26049049)
chr6 (186-380)||(26070024-26070218)
chr6 (200-380)||(26055936-26056116)
chr6 (200-380)||(26075906-26076086)
chr6 (166-380)||(28234574-28234787)
chr6 (154-356)||(28325515-28325717)
chr6 (188-380)||(27338050-27338242)
chr6 (188-380)||(27398790-27398982)
chr6 (166-356)||(28181148-28181338)
chr6 (219-375)||(28149953-28150108)
chr6 (154-356)||(28098320-28098522)
chr6 (166-356)||(28185400-28185590)
chr6 (189-309)||(27214498-27214618)
chr6 (189-309)||(27234610-27234730)
chr6 (269-380)||(25506975-25507086)
chr6 (255-306)||(26635774-26635825)
chr6 (255-306)||(26741740-26741791)
chr6 (188-309)||(26811590-26811711)
chr6 (191-380)||(26937104-26937293)
chr6 (258-306)||(26959250-26959298)
chr6 (188-336)||(28297698-28297846)
chr6 (188-336)||(28514227-28514375)
chr6 (257-308)||(26975134-26975185)
chr6 (188-315)||(29826102-29826229)
chr6 (188-306)||(26949745-26949863)
chr6 (255-309)||(27665169-27665223)
chr6 (261-354)||(2184324-2184417)
chr6 (242-354)||(2184934-2185046)
chr6 (283-380)||(27229242-27229339)
chr6 (260-308)||(25071741-25071789)
[»] scaffold0349 (2 HSPs)
scaffold0349 (43-380)||(3260-3599)
scaffold0349 (43-380)||(14196-14532)
[»] scaffold0277 (2 HSPs)
scaffold0277 (61-380)||(4529-4848)
scaffold0277 (61-380)||(13490-13809)
[»] scaffold0419 (1 HSPs)
scaffold0419 (61-380)||(7535-7854)
[»] scaffold0003 (1 HSPs)
scaffold0003 (58-348)||(59612-59902)
[»] chr4 (8 HSPs)
chr4 (58-348)||(18073804-18074094)
chr4 (219-351)||(18699403-18699535)
chr4 (200-336)||(18655461-18655597)
chr4 (219-351)||(18679570-18679702)
chr4 (209-351)||(18731497-18731639)
chr4 (209-351)||(18724078-18724220)
chr4 (154-308)||(5090905-5091059)
chr4 (179-348)||(17989019-17989185)
[»] chr1 (3 HSPs)
chr1 (176-351)||(28127639-28127814)
chr1 (176-333)||(28164323-28164479)
chr1 (200-351)||(268341-268492)
[»] chr8 (1 HSPs)
chr8 (200-333)||(29273767-29273900)
[»] scaffold0038 (4 HSPs)
scaffold0038 (166-378)||(27460-27672)
scaffold0038 (154-374)||(42982-43202)
scaffold0038 (166-380)||(34735-34949)
scaffold0038 (154-356)||(116830-117032)
[»] chr2 (2 HSPs)
chr2 (255-378)||(3279700-3279823)
chr2 (255-308)||(17993736-17993789)
[»] scaffold1254 (1 HSPs)
scaffold1254 (296-380)||(10-94)
[»] scaffold0019 (1 HSPs)
scaffold0019 (166-375)||(58245-58454)
[»] chr5 (1 HSPs)
chr5 (188-321)||(16689080-16689213)


Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 64)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 380
Target Start/End: Original strand, 27604520 - 27604882
Alignment:
Q  18 aaaaataggatatatgtagtgttgagtacccaggaggactatcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacct 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27604520 aaaaataggatttatgtagtgttgagtacccaggaggactatcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacct 27604619  T
Q  118 ctttatgttatcctcatcattttgaaaccnnnnnnnatgctcagccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacacca 217  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27604620 ctttatgttatcctcatcattttgaaacctttttttatgctcagccaatgcttgaccgtaactacctttatgatgtcgcacatgagaaggttccacacca 27604719  T
Q  218 aagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaa 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  27604720 aagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaaggaagaagaggcatatttgatagaaa 27604819  T
Q  318 acacaagaataaaaatcctggattcatcaatggctttgagatgtgctggtgtgatttcatctc 380  Q
    ||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  27604820 acacaggaataaaaatcctggattcatcaatggccttgagaagtgctggtgtgatttcatctc 27604882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 43 - 380
Target Start/End: Original strand, 27718219 - 27718556
Alignment:
Q  43 gtacccaggaggactatcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacctctttatgttatcctcatcattttga 142  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||| || ||||||||||    
T  27718219 gtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctgcaacctctccatgttattcttatcattttga 27718318  T
Q  143 aaccnnnnnnnatgctcagccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgac 242  Q
    ||||       ||||||||||||||||| ||| ||||||||||| ||||||||||| | || ||||||||| || ||||||||||||||||||| |||||    
T  27718319 aacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcacgttagtaggttccacgccgaagaaaacaggcaaaacgaggcgac 27718418  T
Q  243 cctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattc 342  Q
    |||||||| ||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  27718419 cctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaagaggcatagttgatagaaaacacaggaataaaaatcctagattc 27718518  T
Q  343 atcaatggctttgagatgtgctggtgtgatttcatctc 380  Q
    ||||||||| |||||  ||| |||||||||||||||||    
T  27718519 atcaatggccttgaggagtgatggtgtgatttcatctc 27718556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 43 - 380
Target Start/End: Original strand, 27610842 - 27611179
Alignment:
Q  43 gtacccaggaggactatcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacctctttatgttatcctcatcattttga 142  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||  ||||||| || ||||||||||    
T  27610842 gtacccaggaggactatcatggtagccggaaaagtttgcagcctggctcagagccactttccatccctgcaacctctccatgttattcttatcattttga 27610941  T
Q  143 aaccnnnnnnnatgctcagccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgac 242  Q
    ||||       ||||||||||||||||| ||| ||||||||||| ||||||||||| | || ||||||||| || ||||||||||||||||||| |||||    
T  27610942 aacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcactttagtaggttccacgccgaagaaaacaggcaaaacgaggcgac 27611041  T
Q  243 cctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattc 342  Q
    |||||||| ||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  27611042 cctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaagaggcatagttgatagaaaacacaggaataaaaatcctagattc 27611141  T
Q  343 atcaatggctttgagatgtgctggtgtgatttcatctc 380  Q
    ||||||||| |||||  ||| |||||||||||||||||    
T  27611142 atcaatggccttgaggagtgatggtgtgatttcatctc 27611179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 27592835 - 27593194
Alignment:
Q  18 aaaaataggatatatgtagtgttgagtacccaggaggactatcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacct 117  Q
    ||||||||||| || |||  |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||| |||||||||    
T  27592835 aaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacct 27592934  T
Q  118 ctttatgttatcctcatcattttgaaaccnnnnnnnatgctcagccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacacca 217  Q
    ||  ||||| | |  ||||||||||||||       ||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||    
T  27592935 ctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttatgatgtcgcacatgagaaggatccacacca 27593034  T
Q  218 aagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaa 317  Q
    |||||||||||||||||   ||||||||||||| |||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||    
T  27593035 aagaaaacaggcaaaacagggcgaccctttgtcttgtagcaatgaatgatgtggtcaagttcgtccaaacaaaacgaagaagaggcatagttgatagaaa 27593134  T
Q  318 acacaagaataaaaatcctggattcatcaatggctttgagatgtgctggtgtgatttcat 377  Q
    ||||| ||||||||||||| || || |||||||| |||||| ||| ||||||||||||||    
T  27593135 acacaggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcat 27593194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 27679318 - 27678956
Alignment:
Q  18 aaaaataggatatatgtagtgttgagtacccaggaggactatcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacct 117  Q
    ||||||||||| || |||  |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||  ||||||||    
T  27679318 aaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctttttccatccttgcaacct 27679219  T
Q  118 ctttatgttatcctcatcattttgaaaccnnnnnnnatgctcagccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacacca 217  Q
    ||  ||||| | |  ||||||||||||||       ||||||||||||||||| ||| |||||||||||| |||||||||||  || |||||||||||||    
T  27679218 ctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttacgatgtcgcacaacagtaggttccacacca 27679119  T
Q  218 aagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaa 317  Q
    ||||||||||||| ||||| ||||||||||||| ||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||    
T  27679118 aagaaaacaggcagaacgaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaa 27679019  T
Q  318 acacaagaataaaaatcctggattcatcaatggctttgagatgtgctggtgtgatttcatctc 380  Q
    ||||| ||||||||||||| || || |||||||| |||||| ||| |||||||||||||||||    
T  27679018 acacaggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatctc 27678956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 27677429 - 27677789
Alignment:
Q  18 aaaaataggatatatgtagtgttgagtacccaggaggactatcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacct 117  Q
    ||||||||||| || |||  |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||    
T  27677429 aaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacct 27677528  T
Q  118 ctttatgttatcctcatcattttgaaaccnnnnnnnatgctcagccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacacca 217  Q
    ||  ||| | | |  ||||||||||||||       ||||||||||||||||| ||| ||||||||||| ||||||||||||  || |||||||||| ||    
T  27677529 ctccatgcttttcggatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcacaatagtaggttccacagca 27677628  T
Q  218 aagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaa 317  Q
    ||||||||||||| ||||| ||||||||||||| ||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||    
T  27677629 aagaaaacaggcagaacgaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaa 27677728  T
Q  318 acacaagaataaaaatcctggattcatcaatggctttgagatgtgctggtgtgatttcatc 378  Q
    |||||  |||||||||||| || || |||||||| |||||| ||| |||||||||||||||    
T  27677729 acacagcaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatc 27677789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 27706217 - 27706577
Alignment:
Q  18 aaaaataggatatatgtagtgttgagtacccaggaggactatcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacct 117  Q
    ||||||||||| || |||  |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||    
T  27706217 aaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacct 27706316  T
Q  118 ctttatgttatcctcatcattttgaaaccnnnnnnnatgctcagccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacacca 217  Q
    ||  ||||| | |  ||||||||||||||       ||||||||||||||||| ||| |||||||||||| |||||||||||  || |||||| ||||||    
T  27706317 ctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttacgatgtcgcacaatagtaggttctacacca 27706416  T
Q  218 aagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaa 317  Q
    || |||||||||| ||||| ||||||||||||| ||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||| |||||||||    
T  27706417 aataaaacaggcagaacgaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcataggtgatagaaa 27706516  T
Q  318 acacaagaataaaaatcctggattcatcaatggctttgagatgtgctggtgtgatttcatc 378  Q
    ||||| ||||||||||||| || || |||||||| |||||| ||| |||||||||||||||    
T  27706517 acacaggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatc 27706577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 50 - 380
Target Start/End: Original strand, 27698341 - 27698671
Alignment:
Q  50 ggaggactatcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacctctttatgttatcctcatcattttgaaaccnnn 149  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||  ||||| | |  ||||||||||||||       
T  27698341 ggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatgtttttcggatcattttgaaacctct 27698440  T
Q  150 nnnnatgctcagccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgt 249  Q
        |||||||||||||||||| || ||||||||||||||||||| ||||| ||  ||||||||||| ||||||||||||||||||| ||||||||||||    
T  27698441 tttcatgctcagccaatgctttgccataactacctttatgatgtctcacattagttggttccacaccgaagaaaacaggcaaaacgaggcgaccctttgt 27698540  T
Q  250 cgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatg 349  Q
    |  |||||| ||||| ||||| |||||||| ||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||| ||||||||||||    
T  27698541 ctcgtagcagtgaattatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttgagagaaaacacaggaataaaaatcctagattcatcaatg 27698640  T
Q  350 gctttgagatgtgctggtgtgatttcatctc 380  Q
    || |||||  ||| |||||||||||||||||    
T  27698641 gccttgaggagtgatggtgtgatttcatctc 27698671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 26802814 - 26802452
Alignment:
Q  18 aaaaataggatatatgtagtgttgagtacccaggaggactatcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacct 117  Q
    ||||||||||| || |||  |||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  26802814 aaaaataggatttaagtaaagttgggtaccgaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctccaacct 26802715  T
Q  118 ctttatgttatcctcatcattttgaaaccnnnnnnnatgctcagccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacacca 217  Q
    ||  |||||||||| ||||||||||||||       ||||||||||||||||| ||| || |||| | ||||||| ||||||| || ||| |||||||||    
T  26802714 ctccatgttatccttatcattttgaaaccttttttcatgctcagccaatgcttcaccatagctacatgtatgatggcgcacattagtaggatccacacca 26802615  T
Q  218 aagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaa 317  Q
    ||||||| |||||| |||| ||||||||||||| | ||||||||||| |||||||||||||| ||||| |||||    ||||||||||||||||||||||    
T  26802614 aagaaaataggcaagacgaggcgaccctttgtcttatagcaatgaataatgtgaacaagttcgtccaagcaaaattttgaagaggcatagttgatagaaa 26802515  T
Q  318 acacaagaataaaaatcctggattcatcaatggctttgagatgtgctggtgtgatttcatctc 380  Q
    ||||| |||||||||| || ||||| |||||||| ||||   ||| |||||||||||||||||    
T  26802514 acacaggaataaaaattctagattcttcaatggccttgatgagtgatggtgtgatttcatctc 26802452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 52 - 380
Target Start/End: Complemental strand, 28781477 - 28781149
Alignment:
Q  52 aggactatcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacctctttatgttatcctcatcattttgaaaccnnnnn 151  Q
    |||||||  |||||||||||| ||||||||||| ||| |||||||||  |||||| | ||||||||||  |||||||||| ||||||||||||||         
T  28781477 aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttt 28781378  T
Q  152 nnatgctcagccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcg 251  Q
      |||  |||||||||||| ||| |||  |||| ||||||||||||||| || ||| |||||||||||||||||||||||||||| |||||| ||||||     
T  28781377 tcatgtccagccaatgcttcaccataaggacctgtatgatgtcgcacattagtaggatccacaccaaagaaaacaggcaaaacgaggcgaccttttgtct 28781278  T
Q  252 tgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggc 351  Q
    ||||||||||||| |||||||||||||| ||||| |||||    |||| |||||||||||||||||||||| ||||||||||||| ||||| || |||||    
T  28781277 tgtagcaatgaataatgtgaacaagttcgtccaagcaaaattttgaagtggcatagttgatagaaaacacaggaataaaaatcctagattcttcgatggc 28781178  T
Q  352 tttgagatgtgctggtgtgatttcatctc 380  Q
     |||||  ||| |||||||||||||||||    
T  28781177 cttgaggagtgatggtgtgatttcatctc 28781149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 154 - 380
Target Start/End: Original strand, 27724796 - 27725022
Alignment:
Q  154 atgctcagccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtg 253  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||||| | || ||||||||| || ||||||||||||||||||| ||||||||||||| ||    
T  27724796 atgctcagccaatgcttcaccataactacctttctgatgtcgcacgttagtaggttccacgccgaagaaaacaggcaaaacgaggcgaccctttgtcttg 27724895  T
Q  254 tagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctt 353  Q
    ||||| ||||| ||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||| |    
T  27724896 tagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaataggcatagttgatagaaaacacaggaataaaaatcctagattcatcaatggcct 27724995  T
Q  354 tgagatgtgctggtgtgatttcatctc 380  Q
    ||||  ||| |||||||||||||||||    
T  27724996 tgaggagtgatggtgtgatttcatctc 27725022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 52 - 380
Target Start/End: Complemental strand, 28786616 - 28786288
Alignment:
Q  52 aggactatcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacctctttatgttatcctcatcattttgaaaccnnnnn 151  Q
    |||||||  |||||||||||| ||||||||||| ||| |||||||||  |||||| | ||||||||||  |||||||||| ||||||||||||||         
T  28786616 aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttt 28786517  T
Q  152 nnatgctcagccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcg 251  Q
      |||| |||||||||||| ||| |||| |||| ||||||||||||||| || ||| || ||||||||||||||||||||||||| |||||| ||||||     
T  28786516 tcatgcccagccaatgcttcaccataacgacctgtatgatgtcgcacattagtaggatcgacaccaaagaaaacaggcaaaacgaggcgaccttttgtct 28786417  T
Q  252 tgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggc 351  Q
    ||||||||||||| |||||||||||||| ||||| |||||    || | ||| |||||||||||||||||| ||||||||||||| ||||| || |||||    
T  28786416 tgtagcaatgaataatgtgaacaagttcgtccaagcaaaattttgatgtggcgtagttgatagaaaacacaggaataaaaatcctagattcttcgatggc 28786317  T
Q  352 tttgagatgtgctggtgtgatttcatctc 380  Q
     |||||  ||| |||||||||||||||||    
T  28786316 cttgaggagtgatggtgtgatttcatctc 28786288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 52 - 380
Target Start/End: Complemental strand, 28792737 - 28792409
Alignment:
Q  52 aggactatcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacctctttatgttatcctcatcattttgaaaccnnnnn 151  Q
    |||||||  |||||||||||| ||||||||||| ||| |||||||||  |||||| | ||||||||||  |||||||||| ||||||||||||||         
T  28792737 aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttt 28792638  T
Q  152 nnatgctcagccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcg 251  Q
      |||| |||||||||||| ||| |||| |||| ||||||||||||||| || ||| || ||||||||||||||||||||||||| |||||| ||||||     
T  28792637 tcatgcccagccaatgcttcaccataacgacctgtatgatgtcgcacattagtaggatcgacaccaaagaaaacaggcaaaacgaggcgaccttttgtct 28792538  T
Q  252 tgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggc 351  Q
    ||||||||||||| |||||||||||||| ||||| |||||    || | ||| |||||||||||||||||| ||||||||||||| ||||| || |||||    
T  28792537 tgtagcaatgaataatgtgaacaagttcgtccaagcaaaattttgatgtggcgtagttgatagaaaacacaggaataaaaatcctagattcttcgatggc 28792438  T
Q  352 tttgagatgtgctggtgtgatttcatctc 380  Q
     |||||  ||| |||||||||||||||||    
T  28792437 cttgaggagtgatggtgtgatttcatctc 28792409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 61 - 375
Target Start/End: Complemental strand, 26884494 - 26884178
Alignment:
Q  61 atggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacctctttatgttatcctcatcattttgaaaccnnnnnnnatgctca 160  Q
    |||||||||||| ||||||||| | || |||| ||||| ||||||||||||||||||||  |||||||||| ||||||||||||||       ||| |||    
T  26884494 atggtagccggacaagttagcaacttgcctcatagccattttccatcgctgcaacctctccatgttatccttatcattttgaaaccttttttcatggtca 26884395  T
Q  161 gccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaat 260  Q
    |||||||||| ||| ||||||||| ||||||||||||||| || ||| ||||||||||  |||||||||||||||| |||||||||||||  |||||| |    
T  26884394 gccaatgcttcaccataactacctgtatgatgtcgcacatcagtaggatccacaccaacaaaaacaggcaaaacgaggcgaccctttgtctcgtagcagt 26884295  T
Q  261 gaatg--atgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgaga 358  Q
    |||||  ||||| |||||||| ||||||||||| |||||||| ||||||||| ||||||| |   |||||||||| || ||||| |||||||| ||||      
T  26884294 gaatgacatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttggtagaaaatattggaataaaaattctagattcttcaatggccttgatg 26884195  T
Q  359 tgtgctggtgtgatttc 375  Q
     ||| ||||||||||||    
T  26884194 agtgatggtgtgatttc 26884178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 58 - 348
Target Start/End: Original strand, 27427461 - 27427751
Alignment:
Q  58 atcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacctctttatgttatcctcatcattttgaaaccnnnnnnnatgc 157  Q
    ||||||||||| ||  |||||||||||| | |||||||||||||||||| ||||||||||||  ||||| | |  ||||||||||||||       ||||    
T  27427461 atcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacctattttcatgc 27427560  T
Q  158 tcagccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagc 257  Q
    ||||||||||||||||| || |||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| || |||||| ||  ||||||    
T  27427561 tcagccaatgctttaccatacctacctgtatgatgtcgcacatcagtaggttccacaccaaagaaaacaggcaaaacgaggcaacccttggttttgtagc 27427660  T
Q  258 aatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaat 348  Q
    | ||||||||||| ||||||   ||||||||| | |||||||| |||||||||  |||||| |   |||| |||||||||||||| |||||    
T  27427661 agtgaatgatgtggacaagtgtgtccaaacaagatgaagaagatgcatagttggcagaaaatatgggaatcaaaatcctggattcttcaat 27427751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 52 - 351
Target Start/End: Complemental strand, 26861951 - 26861655
Alignment:
Q  52 aggactatcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacctctttatgttatcctcatcattttgaaaccnnnnn 151  Q
    |||||||  ||||||||| || ||||||||||| ||| ||||||| |||||||||| |||||||||||  |||||||||  ||||||||||||||         
T  26861951 aggactaaaatggtagcctgacaagttagcagcttggttcagagcaactttccatctctgcaacctctccatgttatccatatcattttgaaaccttttt 26861852  T
Q  152 nnatgctcagccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcg 251  Q
      ||||| ||||||||||| ||| ||| ||||| ||||||||||||||| || ||| ||||  ||| |||||||||||||||||||||||||||||  |     
T  26861851 tcatgcttagccaatgcttcaccataaatacctctatgatgtcgcacattagtaggatccatgccatagaaaacaggcaaaacgacgcgacccttttcc- 26861753  T
Q  252 tgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggc 351  Q
      | ||| | |||||| || |||||||||||||||||||| || |||||||||||||||  |||||||||| |||| ||||| || || || ||||||||    
T  26861752 --ttgcagttaatgatttggacaagttcatccaaacaaaatgacgaagaggcatagttggcagaaaacacaggaatgaaaattctagactcttcaatggc 26861655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 200 - 380
Target Start/End: Complemental strand, 26646669 - 26646489
Alignment:
Q  200 tgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaag 299  Q
    |||| ||| ||||| ||| ||||||| ||||||||||  |||||||||||| ||||||||||||||||||| |||||||| |||||||||||   |||||    
T  26646669 tgagtaggatccacgccatagaaaacgggcaaaacgagacgaccctttgtcttgtagcaatgaatgatgtggacaagttcgtccaaacaaaatttagaag 26646570  T
Q  300 aggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatgtgctggtgtgatttcatctc 380  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| |||||||| ||||   ||| |||||||||||||||||    
T  26646569 aggcatagttgatagaaaacacaggaataaaaatcctagattcttcaatggccttgatgagtgatggtgtgatttcatctc 26646489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 200 - 380
Target Start/End: Complemental strand, 26752637 - 26752457
Alignment:
Q  200 tgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaag 299  Q
    |||| ||| ||||| ||| ||||||| ||||||||||  |||||||||||| ||||||||||||||||||| |||||||| |||||||||||   |||||    
T  26752637 tgagtaggatccacgccatagaaaacgggcaaaacgagacgaccctttgtcttgtagcaatgaatgatgtggacaagttcgtccaaacaaaatttagaag 26752538  T
Q  300 aggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatgtgctggtgtgatttcatctc 380  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| |||||||| ||||   ||| |||||||||||||||||    
T  26752537 aggcatagttgatagaaaacacaggaataaaaatcctagattcttcaatggccttgatgagtgatggtgtgatttcatctc 26752457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 74 - 380
Target Start/End: Original strand, 27531068 - 27531374
Alignment:
Q  74 aagttagcagcctggctcagagccactttccatcgctgcaacctctttatgttatcctcatcattttgaaaccnnnnnnnatgctcagccaatgctttac 173  Q
    |||||||| || |||||||||||  |||||||| ||||||||||||   ||||||||| |||||||||||||        |||| |||| ||||||| ||    
T  27531068 aagttagccgcttggctcagagcttctttccattgctgcaacctctcagtgttatccttatcattttgaaacttttttttatgcacagctaatgcttcac 27531167  T
Q  174 cgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaac 273  Q
    | || |||||| | ||||||||||||| || ||| ||||||||||  |||||||||||||| |  | |||||||||   |||||||||| ||||||||||    
T  27531168 catatctacctgtgtgatgtcgcacatcagtaggatccacaccaataaaaacaggcaaaacaagacaaccctttgtatcgtagcaatgagtgatgtgaac 27531267  T
Q  274 aagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatgtgctggtgtgatt 373  Q
    |||||| ||||||||||| |||||||| ||||||||   |||||| ||  ||||||||||||| ||||  |||||||| ||     ||| ||||||||||    
T  27531268 aagttcgtccaaacaaaatgaagaagatgcatagttttcagaaaatacgggaataaaaatcctagatttttcaatggcattttttagtgatggtgtgatt 27531367  T
Q  374 tcatctc 380  Q
    |||||||    
T  27531368 tcatctc 27531374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 154 - 378
Target Start/End: Complemental strand, 31284524 - 31284300
Alignment:
Q  154 atgctcagccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtg 253  Q
    ||||| |||||||||||  || ||||||||| |||||||||||||||||||||| ||||| ||||||||||| |||||||||| |||||| |||  | |     
T  31284524 atgcttagccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgctta 31284425  T
Q  254 tagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctt 353  Q
    ||  | ||||||||||| |||||||| |||||||||||||| |||||||||||||||  |||||||||  | ||||||||||| || || |||||||| |    
T  31284424 tacaagtgaatgatgtggacaagttcgtccaaacaaaacgacgaagaggcatagttggcagaaaacacggggataaaaatcctagactcttcaatggcat 31284325  T
Q  354 tgagatgtgctggtgtgatttcatc 378  Q
    ||    ||| |||||||||||||||    
T  31284324 tgtcgagtgatggtgtgatttcatc 31284300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 200 - 380
Target Start/End: Complemental strand, 25579909 - 25579729
Alignment:
Q  200 tgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaag 299  Q
    |||| |||||||||| || ||||||| ||||| || | || || ||||||| ||||||| ||||||||||| |||||||| ||||||||||| |||||||    
T  25579909 tgagtaggttccacatcatagaaaacgggcaatactaagcaactctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaag 25579810  T
Q  300 aggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatgtgctggtgtgatttcatctc 380  Q
    | |||||||||  |||||| |   ||||||||||||| ||||| |||||||| |||| | ||| |||||||||||||||||    
T  25579809 atgcatagttggcagaaaatatgggaataaaaatcctagattcttcaatggccttgacaagtgatggtgtgatttcatctc 25579729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 200 - 380
Target Start/End: Complemental strand, 26656179 - 26655999
Alignment:
Q  200 tgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaag 299  Q
    |||| ||| ||||||||| ||||||||||||||||    | |||||||||| | ||||||||||||||||| |||||||| ||||||||||| |||||||    
T  26656179 tgagtaggatccacaccatagaaaacaggcaaaaccgaacaaccctttgtcttatagcaatgaatgatgtggacaagttcgtccaaacaaaatgaagaag 26656080  T
Q  300 aggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatgtgctggtgtgatttcatctc 380  Q
    | |||||||||  |||||| |   ||||||||||||||||||| |||||||| || |   ||| |||||||||||||||||    
T  26656079 atgcatagttggcagaaaatatgggaataaaaatcctggattcttcaatggccttaacgagtgatggtgtgatttcatctc 26655999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 200 - 380
Target Start/End: Complemental strand, 26762150 - 26761970
Alignment:
Q  200 tgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaag 299  Q
    |||| ||| ||||||||| ||||||||||||||||    | |||||||||| | ||||||||||||||||| |||||||| ||||||||||| |||||||    
T  26762150 tgagtaggatccacaccatagaaaacaggcaaaaccgaacaaccctttgtcttatagcaatgaatgatgtggacaagttcgtccaaacaaaatgaagaag 26762051  T
Q  300 aggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatgtgctggtgtgatttcatctc 380  Q
    | |||||||||  |||||| |   ||||||||||||||||||| |||||||| || |   ||| |||||||||||||||||    
T  26762050 atgcatagttggcagaaaatatgggaataaaaatcctggattcttcaatggccttaacgagtgatggtgtgatttcatctc 26761970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 200 - 354
Target Start/End: Complemental strand, 28139731 - 28139577
Alignment:
Q  200 tgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaag 299  Q
    |||||||| ||||||||| |||||||||||||||| |  |  ||||||||  || |||| | ||||||||| |||||||| ||||| |||||||||||||    
T  28139731 tgagaaggatccacaccatagaaaacaggcaaaaccaaacatccctttgtgttgaagcagtcaatgatgtggacaagttcgtccaagcaaaacgaagaag 28139632  T
Q  300 aggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggcttt 354  Q
    ||||||||||||| ||||||||| | || |||||||| ||||| |||||||||||    
T  28139631 aggcatagttgatggaaaacacagggatgaaaatcctagattcttcaatggcttt 28139577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 176 - 380
Target Start/End: Complemental strand, 25481956 - 25481752
Alignment:
Q  176 taactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaa 275  Q
    ||||||| | ||||| |||| |||| || ||| ||||||||| ||||||| || || || | || || ||||||| ||||||| ||||||||||| ||||    
T  25481956 taactacatgtatgacgtcgaacatcagtaggatccacaccatagaaaacgggtaatactaagcaactctttgtcttgtagcagtgaatgatgtggacaa 25481857  T
Q  276 gttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatgtgctggtgtgatttc 375  Q
    |||| ||||||||||| |||||||| |||||||||  |||||| |   ||||| ||||||| ||||| |||||||| |||| | ||| ||||||||||||    
T  25481856 gttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaatacaaatcctagattcttcaatggccttgacaagtgatggtgtgatttc 25481757  T
Q  376 atctc 380  Q
    |||||    
T  25481756 atctc 25481752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 200 - 380
Target Start/End: Complemental strand, 26143055 - 26142875
Alignment:
Q  200 tgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaag 299  Q
    |||| |||||||||| || ||||||| || || || | || || ||||||| ||||||| ||||||||||| |||||||| ||||||||||| |||||||    
T  26143055 tgagtaggttccacatcatagaaaacgggaaatactaagcaactctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaag 26142956  T
Q  300 aggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatgtgctggtgtgatttcatctc 380  Q
    | |||||||||  |||||| |   ||||||||||||| ||||| |||||||| |||| | ||| |||||||||||||||||    
T  26142955 atgcatagttggcagaaaatatgggaataaaaatcctagattcttcaatggccttgacaagtgatggtgtgatttcatctc 26142875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 166 - 378
Target Start/End: Complemental strand, 28227174 - 28226962
Alignment:
Q  166 tgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatg 265  Q
    ||||||||| ||||| || || ||||||||||||||||||||||||||| || ||||||  |||||||| | ||| |  |||  | || |||||||||||    
T  28227174 tgctttaccataactgcccttgtgatgtcgcacatgagaaggttccacatcatagaaaattggcaaaacaaggcgccgattttccttgaagcaatgaatg 28227075  T
Q  266 atgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatgtgctg 365  Q
    ||||| |||||||| ||||| ||||| |||||||| ||||| |||||||| || ||| |||| |||||||| ||||| |||||| | |||| | ||| ||    
T  28227074 atgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagattcttcaatgaccttgaaaagtgatg 28226975  T
Q  366 gtgtgatttcatc 378  Q
     ||| ||||||||    
T  28226974 atgttatttcatc 28226962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 209 - 351
Target Start/End: Complemental strand, 26824021 - 26823879
Alignment:
Q  209 tccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagt 308  Q
    ||||||||| |||||||||||||||||| ||| ||||||  | |||||    |||||||||| |||||||| ||||||||||| ||||||||||||||||    
T  26824021 tccacaccatagaaaacaggcaaaacgaggcgccccttttccttgtagacgcgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagt 26823922  T
Q  309 tgatagaaaacacaagaataaaaatcctggattcatcaatggc 351  Q
    ||  |||||||||| ||||||||||||| || || ||||||||    
T  26823921 tggcagaaaacacaggaataaaaatcctagactcttcaatggc 26823879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 200 - 336
Target Start/End: Complemental strand, 26623166 - 26623030
Alignment:
Q  200 tgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaag 299  Q
    |||| ||| ||||| ||| |||| || ||||||||||  |||||||||||  ||||||| ||||||||||| |||||||||||||||||||| ||||||     
T  26623166 tgagtaggatccacgccatagaagacgggcaaaacgagacgaccctttgttttgtagcagtgaatgatgtggacaagttcatccaaacaaaatgaagaat 26623067  T
Q  300 aggcatagttgatagaaaacacaagaataaaaatcct 336  Q
    | |||||||||  |||||||||| |||||||||||||    
T  26623066 atgcatagttgggagaaaacacaggaataaaaatcct 26623030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 200 - 336
Target Start/End: Complemental strand, 26729144 - 26729008
Alignment:
Q  200 tgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaag 299  Q
    |||| ||| ||||| ||| |||| || ||||||||||  |||||||||||  ||||||| ||||||||||| |||||||||||||||||||| ||||||     
T  26729144 tgagtaggatccacgccatagaagacgggcaaaacgagacgaccctttgttttgtagcagtgaatgatgtggacaagttcatccaaacaaaatgaagaat 26729045  T
Q  300 aggcatagttgatagaaaacacaagaataaaaatcct 336  Q
    | |||||||||  |||||||||| |||||||||||||    
T  26729044 atgcatagttgggagaaaacacaggaataaaaatcct 26729008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 154 - 374
Target Start/End: Complemental strand, 28243040 - 28242820
Alignment:
Q  154 atgctcagccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtg 253  Q
    ||||||||||| ||||||||| ||||| ||  | ||||||| ||| | ||||||||||||| || ||||||  |||||||| | ||| || ||| || ||    
T  28243040 atgctcagccagtgctttaccataactgccaatctgatgtctcacgttagaaggttccacatcatagaaaattggcaaaactaggcgtccatttttcttg 28242941  T
Q  254 tagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctt 353  Q
     |||| ||||||||||| |||||||| ||||| ||||| |||||||| ||||| |||||||| || ||| |||| |||||||| || || |||||||| |    
T  28242940 cagcagtgaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggcct 28242841  T
Q  354 tgagatgtgctggtgtgattt 374  Q
    ||| | ||| |||||| ||||    
T  28242840 tgaaaagtgatggtgttattt 28242820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 166 - 374
Target Start/End: Original strand, 26341894 - 26342105
Alignment:
Q  166 tgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctt---tgtcgtgtagcaatga 262  Q
    ||||| ||||||||| ||  | ||| |||| ||||||||||||||||   || |||||||||||||||    |||||||||   || | || ||||||||    
T  26341894 tgcttcaccgtaactcccaatctgacgtcgtacatgagaaggttccatgtcatagaaaacaggcaaaattttgcgacccttctttgccttgaagcaatga 26341993  T
Q  263 atgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatgtg 362  Q
    |||||||| |||||||| |||||||||||||||||||| ||||||||||| || || |   |||| ||||||||||| || ||||||||||||| | |||    
T  26341994 atgatgtggacaagttcgtccaaacaaaacgaagaagaagcatagttgattgagaaaattggaatgaaaatcctggactcttcaatggctttgacaagtg 26342093  T
Q  363 ctggtgtgattt 374  Q
     | |||||||||    
T  26342094 attgtgtgattt 26342105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 200 - 380
Target Start/End: Complemental strand, 25538730 - 25538550
Alignment:
Q  200 tgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaag 299  Q
    |||| |||||||||| || ||||||| ||||| || | || || ||||||| ||||||| |||||||| || |||||||| ||||||||||| |||||||    
T  25538730 tgagtaggttccacatcatagaaaacgggcaatactaagcaactctttgtcttgtagcagtgaatgatctggacaagttcgtccaaacaaaatgaagaag 25538631  T
Q  300 aggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatgtgctggtgtgatttcatctc 380  Q
    | |||||||||  |||||| |   |||||||||| || ||||| || ||||| |||| | ||| |||||||||||||||||    
T  25538630 atgcatagttggcagaaaatatgggaataaaaattctagattcttcgatggccttgacaagtgatggtgtgatttcatctc 25538550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 166 - 309
Target Start/End: Complemental strand, 26848884 - 26848741
Alignment:
Q  166 tgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatg 265  Q
    ||||| ||| |||||||  || ||||||||||||||||||||||| |  ||| |||||||||| | ||| | || |||||||  | || |||||||||||    
T  26848884 tgcttcaccataactactattctgatgtcgcacatgagaaggttctatgccatagaaaacaggaataaccatgctacccttttccttggagcaatgaatg 26848785  T
Q  266 atgtgaacaagttcatccaaacaaaacgaagaagaggcatagtt 309  Q
    ||||| |||||||| ||||||||||||||||||| |||||||||    
T  26848784 atgtggacaagttcgtccaaacaaaacgaagaagtggcatagtt 26848741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 186 - 380
Target Start/End: Complemental strand, 26049049 - 26048855
Alignment:
Q  186 tatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaa 285  Q
    |||||||||| |  |||| |||||||||| || | ||||| ||||| || | || || ||||||| ||||||| ||||||||||| |||||||| |||||    
T  26049049 tatgatgtcgtatgtgagtaggttccacatcataaaaaacgggcaatactaagcaactctttgtcttgtagcagtgaatgatgtggacaagttcgtccaa 26048950  T
Q  286 acaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatgtgctggtgtgatttcatctc 380  Q
    |||||| |||||||| |||||||||  |||||| |   ||||||||||||| ||||| || ||||| |||| | ||   ||||||||||||||||    
T  26048949 acaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttccatggccttgacaagtttgggtgtgatttcatctc 26048855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 186 - 380
Target Start/End: Complemental strand, 26070218 - 26070024
Alignment:
Q  186 tatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaa 285  Q
    |||||||||| |  |||| |||||||||| || | ||||| ||||| || | || || ||||||| ||||||| ||||||||||| |||||||| |||||    
T  26070218 tatgatgtcgtatgtgagtaggttccacatcataaaaaacgggcaatactaagcaactctttgtcttgtagcagtgaatgatgtggacaagttcgtccaa 26070119  T
Q  286 acaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatgtgctggtgtgatttcatctc 380  Q
    |||||| |||||||| |||||||||  |||||| |   ||||||||||||| ||||| || ||||| |||| | ||   ||||||||||||||||    
T  26070118 acaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttccatggccttgacaagtttgggtgtgatttcatctc 26070024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 200 - 380
Target Start/End: Complemental strand, 26056116 - 26055936
Alignment:
Q  200 tgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaag 299  Q
    |||| |||||||||| || ||||||| ||||| || | || || ||||||  ||||||| ||||||||||| |||||||| ||||||||||| |||||||    
T  26056116 tgagtaggttccacatcatagaaaacgggcaatactaagcaactctttgtgttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaag 26056017  T
Q  300 aggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatgtgctggtgtgatttcatctc 380  Q
    | |||||||||  |||||| |   ||||||||||||  ||||| || ||||| |||| | ||| || ||||||||||||||    
T  26056016 atgcatagttggcagaaaatatgggaataaaaatcccagattcttcgatggccttgacaagtgatgatgtgatttcatctc 26055936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 200 - 380
Target Start/End: Complemental strand, 26076086 - 26075906
Alignment:
Q  200 tgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaag 299  Q
    |||| |||||||||| || ||||||| ||||| || | || || ||||||  ||||||| ||||||||||| |||||||| ||||||||||| |||||||    
T  26076086 tgagtaggttccacatcatagaaaacgggcaatactaagcaactctttgtgttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaag 26075987  T
Q  300 aggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatgtgctggtgtgatttcatctc 380  Q
    | |||||||||  |||||| |   ||||||||||||  ||||| || ||||| |||| | ||| || ||||||||||||||    
T  26075986 atgcatagttggcagaaaatatgggaataaaaatcccagattcttcgatggccttgacaagtgatgatgtgatttcatctc 26075906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 166 - 380
Target Start/End: Complemental strand, 28234787 - 28234574
Alignment:
Q  166 tgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatg 265  Q
    ||||||||| ||||| || || ||||||||||| ||||||||||||||| || ||||||  |||||||| | ||| |  |||  |  | ||| || ||||    
T  28234787 tgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactaggcgtctattttcctcgaagc-ataaatg 28234689  T
Q  266 atgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatgtgctg 365  Q
    ||||| |||||||| ||||| ||||| |||||||| ||||| |||||||| || ||| |||| |||||||| || || |||||||| |||| | ||| ||    
T  28234688 atgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagtgatg 28234589  T
Q  366 gtgtgatttcatctc 380  Q
    |||| ||||||||||    
T  28234588 gtgttatttcatctc 28234574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 356
Target Start/End: Complemental strand, 28325717 - 28325515
Alignment:
Q  154 atgctcagccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtg 253  Q
    |||||| |||| ||||||||| ||||| || || ||||||||||| ||||||||||||||| |  ||||||| ||| |||| | ||| || |||    ||    
T  28325717 atgctcggccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcgtagaaaactggctaaactaggcgcccattttctttg 28325618  T
Q  254 tagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctt 353  Q
     |||| ||||| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||| || | | |||| |||||||| || || |||||||| |    
T  28325617 aagcagtgaataatgtggacaagttcatccaagcaaaaggaagaagaagcataattgatagacaaaataggaatgaaaatcctagactcttcaatggcct 28325518  T
Q  354 tga 356  Q
    |||    
T  28325517 tga 28325515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 188 - 380
Target Start/End: Original strand, 27338050 - 27338242
Alignment:
Q  188 tgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaac 287  Q
    |||||||| || |||| ||| ||| ||||| ||||||||||||||||    | |||| ||||| ||||||| ||||||||||| |||||||| ||||| |    
T  27338050 tgatgtcgtacgtgagtaggatccgcaccatagaaaacaggcaaaaccgaacaaccccttgtcttgtagcagtgaatgatgtggacaagttcgtccaagc 27338149  T
Q  288 aaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatgtgctggtgtgatttcatctc 380  Q
    |||| |||||||| ||||||||   |||||| |   |||| |||||||| || || |||||||| |||| | ||| ||||||| |||||||||    
T  27338150 aaaatgaagaagatgcatagtttgcagaaaatatgggaatcaaaatcctagactcttcaatggccttgacaagtgatggtgtgctttcatctc 27338242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 188 - 380
Target Start/End: Original strand, 27398790 - 27398982
Alignment:
Q  188 tgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaac 287  Q
    |||||||| || |||| ||| ||| ||||| ||||||||||||||||    | |||| ||||| ||||||| ||||||||||| |||||||| ||||| |    
T  27398790 tgatgtcgtacgtgagtaggatccgcaccatagaaaacaggcaaaaccgaacaaccccttgtcttgtagcagtgaatgatgtggacaagttcgtccaagc 27398889  T
Q  288 aaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatgtgctggtgtgatttcatctc 380  Q
    |||| |||||||| ||||||||   |||||| |   |||| |||||||| || || |||||||| |||| | ||| ||||||| |||||||||    
T  27398890 aaaatgaagaagatgcatagtttgcagaaaatatgggaatcaaaatcctagactcttcaatggccttgacaagtgatggtgtgctttcatctc 27398982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 166 - 356
Target Start/End: Complemental strand, 28181338 - 28181148
Alignment:
Q  166 tgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatg 265  Q
    ||||||||| ||||| || || ||||||||||| ||||||||||||||| || ||||||  |||||||| |  || ||  ||  | || |||| ||||||    
T  28181338 tgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactagacgcccgctttccttgaagcagtgaatg 28181239  T
Q  266 atgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttga 356  Q
    ||||| |||||||| ||||| ||||| |||||||| ||||| |||||||| || ||  |||| |||||||| || || |||||||| ||||    
T  28181238 atgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttga 28181148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 219 - 375
Target Start/End: Complemental strand, 28150108 - 28149953
Alignment:
Q  219 agaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaa 318  Q
    |||||| ||||| ||| | || |||||||| | || |||| ||||| ||||| |||||||| ||||||||||| |||||||| | |||||||||||| ||    
T  28150108 agaaaataggcagaactaagcaaccctttgccttgaagcagtgaataatgtggacaagttcgtccaaacaaaatgaagaagaagtatagttgatagagaa 28150009  T
Q  319 cacaagaataaaaatcctggattcatcaatggctttgagatgtgctggtgtgatttc 375  Q
     |   |||| ||||||||||| || |||||||| |||||| ||| ||||||||||||    
T  28150008 gattggaatgaaaatcctggactcttcaatggccttgaga-gtgatggtgtgatttc 28149953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 356
Target Start/End: Original strand, 28098320 - 28098522
Alignment:
Q  154 atgctcagccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgt- 252  Q
    ||||| ||| ||||||| ||| ||||| ||  | ||||||||||| ||||||||||||||  || | |||| ||| ||||||| || ||||||| || |     
T  28098320 atgcttagctaatgcttcaccataactccccgtctgatgtcgcacgtgagaaggttccacgtcacaaaaaataggaaaaacgaagcaacccttt-tcttc 28098418  T
Q  253 gtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggct 352  Q
    ||| |  ||||||||||| ||||||||||||||||||||| ||||||| ||||||||  |||| || ||  |||| ||||||||||| || || |||||     
T  28098419 gtaacggtgaatgatgtggacaagttcatccaaacaaaacaaagaagaagcatagttcttagagaagaccggaattaaaatcctggactcttcgatggcc 28098518  T
Q  353 ttga 356  Q
    ||||    
T  28098519 ttga 28098522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 356
Target Start/End: Complemental strand, 28185590 - 28185400
Alignment:
Q  166 tgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatg 265  Q
    ||||||||| ||||| ||  | ||||||||||| ||||||||||||||| || ||||||  |||||||| |  || ||  ||  | || |||| | ||||    
T  28185590 tgctttaccataactgcccgtgtgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactagacgcccgctttccttgaagcagttaatg 28185491  T
Q  266 atgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttga 356  Q
    ||||| |||||||| ||||| ||||| |||||||| ||||| |||||||| || ||  |||| |||||||| || || |||||||| ||||    
T  28185490 atgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttga 28185400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 309
Target Start/End: Complemental strand, 27214618 - 27214498
Alignment:
Q  189 gatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaaca 288  Q
    |||||||||  ||||||||||| || ||| |||||||||| | ||| | |||||| |||  | || |||||||| ||||||| |||||||| ||||||||    
T  27214618 gatgtcgcaagtgagaaggttcaacgccatagaaaacaggtagaacaaggcgacctttttccttggagcaatgagtgatgtggacaagttcgtccaaaca 27214519  T
Q  289 aaacgaagaagaggcatagtt 309  Q
    ||| |||||||  ||||||||    
T  27214518 aaatgaagaagtagcatagtt 27214498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 309
Target Start/End: Original strand, 27234610 - 27234730
Alignment:
Q  189 gatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaaca 288  Q
    |||||||||  ||||||||||| || ||| |||||||||| | ||| | |||||| |||  | || |||||||| ||||||| |||||||| ||||||||    
T  27234610 gatgtcgcaagtgagaaggttcaacgccatagaaaacaggtagaacaaggcgacctttttccttggagcaatgagtgatgtggacaagttcgtccaaaca 27234709  T
Q  289 aaacgaagaagaggcatagtt 309  Q
    ||| |||||||  ||||||||    
T  27234710 aaatgaagaagtagcatagtt 27234730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 380
Target Start/End: Original strand, 25506975 - 25507086
Alignment:
Q  269 tgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatgtgctggtg 368  Q
    ||||||||||| |||||||||||    ||||||||||||||||||||||  ||  ||||||||||||| ||||| ||||||||  |||    || |||||    
T  25506975 tgaacaagttcctccaaacaaaattttgaagaggcatagttgatagaaagaaccggaataaaaatcctagattcttcaatggcgatgacgactgatggtg 25507074  T
Q  369 tgatttcatctc 380  Q
    ||||||||||||    
T  25507075 tgatttcatctc 25507086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 26635825 - 26635774
Alignment:
Q  255 agcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcata 306  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||| |||||    
T  26635825 agcaatgaatgatgtggacaagttcatccaaacaaaacaaagaagaagcata 26635774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 26741791 - 26741740
Alignment:
Q  255 agcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcata 306  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||| |||||    
T  26741791 agcaatgaatgatgtggacaagttcatccaaacaaaacaaagaagaagcata 26741740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 309
Target Start/End: Complemental strand, 26811711 - 26811590
Alignment:
Q  188 tgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaac 287  Q
    ||||||||||| |||||||||||||||||| ||||||| || | ||| | |||||| |||  | || || | | ||||||||| ||||| ||||| ||||    
T  26811711 tgatgtcgcacgtgagaaggttccacaccatagaaaactggtagaacaaggcgacctttttccttgaagtagttaatgatgtggacaagctcatctaaac 26811612  T
Q  288 aaaacgaagaagaggcatagtt 309  Q
    ||||||| ||||  ||||||||    
T  26811611 aaaacgacgaagttgcatagtt 26811590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 380
Target Start/End: Complemental strand, 26937293 - 26937104
Alignment:
Q  191 tgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaa 290  Q
    ||||| || |||||||| |||||  || |||||| ||||||||  |   |||| |||||| || |||| | || |||||| |||||||| ||||||||||    
T  26937293 tgtcgaacgtgagaaggatccacttcatagaaaataggcaaaattagatgaccttttgtcttgaagcagtcaacgatgtggacaagttcgtccaaacaaa 26937194  T
Q  291 acgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatgtgctggtgtgatttcatctc 380  Q
    | ||||||| ||||||||||||||| || ||| | ||   ||||| ||| || ||||| || |||| | ||| |||||||||||| ||||    
T  26937193 atgaagaagtggcatagttgatagagaatacaggtatggcaatcccggaatcttcaattgccttgacaagtgatggtgtgatttcttctc 26937104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 26959298 - 26959250
Alignment:
Q  258 aatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcata 306  Q
    ||||||||||||| ||||||||||||||| ||||||||||||| |||||    
T  26959298 aatgaatgatgtggacaagttcatccaaataaaacgaagaagaagcata 26959250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 188 - 336
Target Start/End: Original strand, 28297698 - 28297846
Alignment:
Q  188 tgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaac 287  Q
    ||||||||||||||||||||||||||| || | ||||  |||||||| |  || |   ||  | || |||| ||||||||||| |||||||| ||||| |    
T  28297698 tgatgtcgcacatgagaaggttccacatcataaaaaatcggcaaaactagacggctactttccttgaagcagtgaatgatgtggacaagttcgtccaagc 28297797  T
Q  288 aaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcct 336  Q
    |||| |||||||| ||||| ||| |||| || ||| |||| ||||||||    
T  28297798 aaaatgaagaagaagcataattggtagataagacaggaatgaaaatcct 28297846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 188 - 336
Target Start/End: Complemental strand, 28514375 - 28514227
Alignment:
Q  188 tgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaac 287  Q
    ||||||||||||||||||||||||||| || | ||||  |||||||| |  || |   ||  | || |||| ||||||||||| |||||||| ||||| |    
T  28514375 tgatgtcgcacatgagaaggttccacatcataaaaaatcggcaaaactagacggctactttccttgaagcagtgaatgatgtggacaagttcgtccaagc 28514276  T
Q  288 aaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcct 336  Q
    |||| |||||||| ||||| ||| |||| || ||| |||| ||||||||    
T  28514275 aaaatgaagaagaagcataattggtagataagacaggaatgaaaatcct 28514227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 308
Target Start/End: Complemental strand, 26975185 - 26975134
Alignment:
Q  257 caatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagt 308  Q
    |||||||||||||| |||||||| ||||||||||| |||||||| |||||||    
T  26975185 caatgaatgatgtggacaagttcgtccaaacaaaatgaagaagaagcatagt 26975134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 315
Target Start/End: Complemental strand, 29826229 - 29826102
Alignment:
Q  188 tgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaac 287  Q
    |||||||||||||||||||| |||||| || |||||| |||||||||||  ||||||||  || ||   || | ||  || || ||||||||||| || |    
T  29826229 tgatgtcgcacatgagaaggatccacatcatagaaaataggcaaaacgagacgacccttcctcttgacacactcaactatatgcacaagttcatctaagc 29826130  T
Q  288 aaaacgaagaagaggcatagttgataga 315  Q
    ||||||||||||| ||||| ||| ||||    
T  29826129 aaaacgaagaagaagcataattggtaga 29826102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 306
Target Start/End: Complemental strand, 26949863 - 26949745
Alignment:
Q  188 tgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaac 287  Q
    ||||||||||| ||||||||||| ||| || ||||||| |||| ||| | |||||| |||  | || || | |||||||| || |||||||| || ||||    
T  26949863 tgatgtcgcacgtgagaaggttctacatcatagaaaactggcagaacaaggcgacctttttccttgaagtagtgaatgatatggacaagttcgtctaaac 26949764  T
Q  288 aaaacgaagaagaggcata 306  Q
    |||| |||||||| |||||    
T  26949763 aaaatgaagaagaagcata 26949745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 27665169 - 27665223
Alignment:
Q  255 agcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagtt 309  Q
    |||||||||||||||| ||||||||||| |||||||| |||||||  ||||||||    
T  27665169 agcaatgaatgatgtggacaagttcatctaaacaaaatgaagaagtagcatagtt 27665223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 354
Target Start/End: Complemental strand, 2184417 - 2184324
Alignment:
Q  261 gaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggcttt 354  Q
    |||||||||| |||||||| ||||||||||| |||||||| ||||||||  | || || ||| | || ||||| ||||| || |||||||||||    
T  2184417 gaatgatgtggacaagttcgtccaaacaaaatgaagaagaagcatagttctttgagaaaacagggatgaaaattctggactcttcaatggcttt 2184324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 354
Target Start/End: Complemental strand, 2185046 - 2184934
Alignment:
Q  242 ccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggatt 341  Q
    ||||||| | || ||||| ||||||| || |||||||| ||||||||||| |||||||| |||||||   | || || ||| | || ||||| |||||||    
T  2185046 ccctttgacttggagcaacgaatgatatggacaagttcgtccaaacaaaatgaagaagaagcatagtcctttgagaaaacagggatgaaaattctggatt 2184947  T
Q  342 catcaatggcttt 354  Q
    | |||||||||||    
T  2184946 cttcaatggcttt 2184934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 380
Target Start/End: Complemental strand, 27229339 - 27229242
Alignment:
Q  283 caaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatgtgctggtgtgatttcatctc 380  Q
    ||||||||| |||||||| |||||||||  |||||| |   ||||||||||||  ||||| |||||||| ||||   ||| |||||||||||| ||||    
T  27229339 caaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatccgagattcgtcaatggccttgacgagtgatggtgtgatttcgtctc 27229242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #64
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 308
Target Start/End: Complemental strand, 25071789 - 25071741
Alignment:
Q  260 tgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagt 308  Q
    ||||||||||| |||||||| || |||||||| |||||||| |||||||    
T  25071789 tgaatgatgtggacaagttcgtctaaacaaaatgaagaagaagcatagt 25071741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 43 - 380
Target Start/End: Original strand, 3260 - 3599
Alignment:
Q  43 gtacccaggaggactatcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacctctttatgttatc-ctcatcattttg 141  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||| |  |  |||||||||    
T  3260 gtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctgcaacctctccatgttttttcggatcattttg 3359  T
Q  142 aaaccnnnnnnnatgctcagccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcga 241  Q
    |||||       ||||||||||||||||| ||| |||||||||||| |||||||||||  || ||||||||||||||| |||||||||| ||||| ||||    
T  3360 aaacctcttttcatgctcagccaatgcttcaccataactacctttacgatgtcgcacaatagtaggttccacaccaaataaaacaggcagaacgaggcga 3459  T
Q  242 ccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcata-gttgatagaaaacacaagaataaaaatcctggat 340  Q
    ||||||||| ||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||| |||    
T  3460 ccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcataggttgatagaaaacacaggaataaaaatcctagat 3559  T
Q  341 tcatcaatggctttgagatgtgctggtgtgatttcatctc 380  Q
    ||||||||||| |||||  ||| |||||||||||||||||    
T  3560 tcatcaatggccttgaggagtgatggtgtgatttcatctc 3599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 43 - 380
Target Start/End: Original strand, 14196 - 14532
Alignment:
Q  43 gtacccaggaggactatcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacctctttatgttatcctcatcattttga 142  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||  ||||| | |  ||||||||||    
T  14196 gtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatgtttttcggatcattttga 14295  T
Q  143 aaccnnnnnnnatgctcagccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgac 242  Q
    ||||       ||||||||||||||||| ||| ||||||||||| ||||||||||| | || ||||||||| || ||||||||||||||||||| |||||    
T  14296 aacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcacgttagtaggttccacgccgaagaaaacaggcaaaacgaggcgac 14395  T
Q  243 cctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattc 342  Q
    |||||||| ||||||| ||||| ||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||    
T  14396 cctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaa-aggcatagttgatagaaaacacaggaataaaaatcctagattc 14494  T
Q  343 atcaatggctttgagatgtgctggtgtgatttcatctc 380  Q
    ||||||||| |||||  ||| |||||||||||||||||    
T  14495 atcaatggccttgaggagtgatggtgtgatttcatctc 14532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 61 - 380
Target Start/End: Original strand, 4529 - 4848
Alignment:
Q  61 atggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacctctttatgttatcctcatcattttgaaaccnnnnnnnatgctca 160  Q
    |||||||||||| ||||||||||| ||| |||||||||  |||||| | ||||||||||  ||||||| || ||||||||||||||       |||||||    
T  4529 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttattcttatcattttgaaacctcttttcatgctca 4628  T
Q  161 gccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaat 260  Q
    |||||||||| ||| |||||||||||  |||||||||| | || ||||||||| || ||||||||||||||||||| ||||||||||||| ||||||| |    
T  4629 gccaatgcttcaccataactacctttcagatgtcgcacgttagtaggttccacgccgaagaaaacaggcaaaacgaggcgaccctttgtcttgtagcagt 4728  T
Q  261 gaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatg 360  Q
    |||| ||||| |||||||| |||||||||||||||||| ||||||||  ||||||||||||| ||||||||||||| |||||||||||||| ||| |  |    
T  4729 gaattatgtggacaagttcgtccaaacaaaacgaagaaaaggcatagaagatagaaaacacaggaataaaaatcctagattcatcaatggccttgcggag 4828  T
Q  361 tgctggtgtgatttcatctc 380  Q
     | |||||||||||||||||    
T  4829 ggatggtgtgatttcatctc 4848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 61 - 380
Target Start/End: Original strand, 13490 - 13809
Alignment:
Q  61 atggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacctctttatgttatcctcatcattttgaaaccnnnnnnnatgctca 160  Q
    |||||||||||| ||||||||||| ||| |||||||||  |||||| | ||||| | ||  ||||||| || ||||||||||||||       |||  ||    
T  13490 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaacctcttttcatgtcca 13589  T
Q  161 gccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaat 260  Q
    |||||||||| ||| |||| |||| ||||||||||||||| || ||| |||||||||||||||||||||||||||| |||||| |||||| |||||||||    
T  13590 gccaatgcttcaccataacgacctgtatgatgtcgcacattagtaggatccacaccaaagaaaacaggcaaaacgaggcgaccttttgtcttgtagcaat 13689  T
Q  261 gaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatg 360  Q
    |||| |||||||||||||| ||||| |||||    |||| ||| |||||||||||||||||| ||||||||||||| ||||| || ||||| |||||  |    
T  13690 gaataatgtgaacaagttcgtccaagcaaaattttgaagtggcgtagttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggag 13789  T
Q  361 tgctggtgtgatttcatctc 380  Q
    || |||||||||||||||||    
T  13790 tgatggtgtgatttcatctc 13809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 61 - 380
Target Start/End: Complemental strand, 7854 - 7535
Alignment:
Q  61 atggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacctctttatgttatcctcatcattttgaaaccnnnnnnnatgctca 160  Q
    |||||||||||| ||||||||||| ||| |||||||||  |||||| | ||||| | ||  ||||||| || ||||||||||||||       |||  ||    
T  7854 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaacctcttttcatgtcca 7755  T
Q  161 gccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaat 260  Q
    |||||||||| ||| |||| |||| ||||||||||||||| || ||| |||||||||||||||||||||||||||| |||||| | |||| |||||||||    
T  7754 gccaatgcttcaccataacgacctgtatgatgtcgcacattagtaggatccacaccaaagaaaacaggcaaaacgaggcgaccttctgtcttgtagcaat 7655  T
Q  261 gaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatg 360  Q
    |||| |||||||||||||| ||||| |||||    |||| ||| |||||||||||||||||| ||||||||||||| ||||| || ||||| |||||  |    
T  7654 gaataatgtgaacaagttcgtccaagcaaaattttgaagtggcgtagttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggag 7555  T
Q  361 tgctggtgtgatttcatctc 380  Q
    || |||||||||||||||||    
T  7554 tgatggtgtgatttcatctc 7535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 58 - 348
Target Start/End: Complemental strand, 59902 - 59612
Alignment:
Q  58 atcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacctctttatgttatcctcatcattttgaaaccnnnnnnnatgc 157  Q
    ||||||||||| ||  |||||||||||| | |||||||||||||||||| ||||||||||||  ||||| | |  ||||||||||||||       ||||    
T  59902 atcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacctattttcatgc 59803  T
Q  158 tcagccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagc 257  Q
    ||||||||||||||||| || |||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| || |||||| ||  ||||||    
T  59802 tcagccaatgctttaccatacctacctgtatgatgtcgcacatcagtaggttccacaccaaagaaaacaggcaaaacgaggcaacccttggttttgtagc 59703  T
Q  258 aatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaat 348  Q
    | ||||||||||| ||||||   ||||||||| | |||||||| |||||||||  |||||| |   |||| |||||||||||||| |||||    
T  59702 agtgaatgatgtggacaagtgtgtccaaacaagatgaagaagatgcatagttggcagaaaatatgggaatcaaaatcctggattcttcaat 59612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 58 - 348
Target Start/End: Complemental strand, 18074094 - 18073804
Alignment:
Q  58 atcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacctctttatgttatcctcatcattttgaaaccnnnnnnnatgc 157  Q
    ||||||||||| ||  |||||||||||| | |||||||||||||||||| ||||||||||||  ||||| | |  ||||||||||||||       ||||    
T  18074094 atcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacctattttcatgc 18073995  T
Q  158 tcagccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagc 257  Q
    ||||||||||||||||| || |||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| || |||||| ||  ||||||    
T  18073994 tcagccaatgctttaccatacctacctgtatgatgtcgcacatcagtaggttccacaccaaagaaaacaggcaaaacgaggcaacccttggttttgtagc 18073895  T
Q  258 aatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaat 348  Q
    | ||||||||||| ||||||   ||||||||| | |||||||| |||||||||  |||||| |   |||| |||||||||||||| |||||    
T  18073894 agtgaatgatgtggacaagtgtgtccaaacaagatgaagaagatgcatagttggcagaaaatatgggaatcaaaatcctggattcttcaat 18073804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 219 - 351
Target Start/End: Original strand, 18699403 - 18699535
Alignment:
Q  219 agaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaa 318  Q
    ||||||||||||||||||  ||||| |||||| ||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  18699403 agaaaacaggcaaaacgagacgaccttttgtcttgtagcagtgaatgatgtgaacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaa 18699502  T
Q  319 cacaagaataaaaatcctggattcatcaatggc 351  Q
    |||| |||| || ||||| || || ||||||||    
T  18699503 cacaggaatgaagatcctagactcttcaatggc 18699535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 200 - 336
Target Start/End: Original strand, 18655461 - 18655597
Alignment:
Q  200 tgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaag 299  Q
    |||| ||| ||||| ||| |||||||||| |||||||  |||||||||||| ||||||| ||||||||| | |||||||| ||||||||||| |||||||    
T  18655461 tgagtaggatccacgccatagaaaacaggaaaaacgagacgaccctttgtcttgtagcagtgaatgatgcggacaagttcgtccaaacaaaatgaagaag 18655560  T
Q  300 aggcatagttgatagaaaacacaagaataaaaatcct 336  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  18655561 aggcatagttgatagaaaacacaggaataaagatcct 18655597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 219 - 351
Target Start/End: Original strand, 18679570 - 18679702
Alignment:
Q  219 agaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaa 318  Q
    |||||||||||||||| |  |||||||||||| ||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||    
T  18679570 agaaaacaggcaaaacaagacgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaa 18679669  T
Q  319 cacaagaataaaaatcctggattcatcaatggc 351  Q
    |||| |||| || ||||| || || ||||||||    
T  18679670 cacaggaatgaagatcctagactcttcaatggc 18679702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 209 - 351
Target Start/End: Original strand, 18731497 - 18731639
Alignment:
Q  209 tccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagt 308  Q
    ||||| ||| |||||||||||||||| |  |||||||||||| ||||||| || |||||||| |||||||| ||||||||||| ||||||||||||||||    
T  18731497 tccacgccatagaaaacaggcaaaacaagacgaccctttgtcttgtagcagtgcatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagt 18731596  T
Q  309 tgatagaaaacacaagaataaaaatcctggattcatcaatggc 351  Q
    |||||||||||||| |||| || ||||| || || ||||||||    
T  18731597 tgatagaaaacacaggaatgaagatcctagactcttcaatggc 18731639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 209 - 351
Target Start/End: Original strand, 18724078 - 18724220
Alignment:
Q  209 tccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagt 308  Q
    ||||| ||| |||||||||||||||| |  |||||||||||| ||||||| || |||||||| |||||||| | ||||||||| ||||||||||||||||    
T  18724078 tccacgccatagaaaacaggcaaaacaagacgaccctttgtcttgtagcagtgcatgatgtggacaagttcgttcaaacaaaatgaagaagaggcatagt 18724177  T
Q  309 tgatagaaaacacaagaataaaaatcctggattcatcaatggc 351  Q
    |||||||||||||| |||| || ||||| || || ||||||||    
T  18724178 tgatagaaaacacaggaatgaagatcctagactcttcaatggc 18724220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 308
Target Start/End: Original strand, 5090905 - 5091059
Alignment:
Q  154 atgctcagccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtg 253  Q
    ||||||||| | ||||| ||| ||||| ||  | |||| ||||||||||||||||||||||||| |||||| ||||||||| | || ||| |||  | ||    
T  5090905 atgctcagcaagtgcttcaccataacttccagtctgatatcgcacatgagaaggttccacaccatagaaaataggcaaaaccaggcaaccattttccttg 5091004  T
Q  254 tagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagt 308  Q
     |||| ||||| || || ||||||||||| ||||||||||||||||| |||||||    
T  5091005 gagcagtgaataatatggacaagttcatctaaacaaaacgaagaagaagcatagt 5091059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 179 - 348
Target Start/End: Original strand, 17989019 - 17989185
Alignment:
Q  179 ctacctttatgatgtcgcacatgagaaggttccacaccaaagaaaac-aggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagt 277  Q
    |||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||| |  ||||  ||   ||||||| ||||||||||| ||||||    
T  17989019 ctacctgtatgatgtcgcacatcaga-ggttccacaccaaagaaaacaaggcaaaacga-ggaaccc--tggtttgtagcagtgaatgatgtggacaagt 17989114  T
Q  278 tcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaat 348  Q
       ||||||||| | |||||||| |||||||||  |||||| |   |||| |||||||||||||| |||||    
T  17989115 gtgtccaaacaagatgaagaagatgcatagttggcagaaaatatgggaatcaaaatcctggattcttcaat 17989185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 6e-47; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 176 - 351
Target Start/End: Original strand, 28127639 - 28127814
Alignment:
Q  176 taactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaa 275  Q
    ||||| ||| |||||| |||||||| || ||| ||||| |||||||||||||||||||| | ||||||||||||| ||||||| ||||||||||| ||||    
T  28127639 taactccctgtatgatatcgcacatcagtaggatccacgccaaagaaaacaggcaaaactaggcgaccctttgtcttgtagcagtgaatgatgtgcacaa 28127738  T
Q  276 gttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggc 351  Q
    |||| ||||||||||| |||||||||||||||||| ||||||| ||| |||||||||| || ||||| ||||||||    
T  28127739 gttcgtccaaacaaaatgaagaagaggcatagttggtagaaaatacaggaataaaaattctagattcttcaatggc 28127814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 176 - 333
Target Start/End: Original strand, 28164323 - 28164479
Alignment:
Q  176 taactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaa 275  Q
    ||||| ||| ||||||||||||||| || ||| ||||| |||| ||||||||||||||| | ||||||||||||| ||||||| ||||||||||| ||||    
T  28164323 taactccctgtatgatgtcgcacatcagtaggatccacgccaa-gaaaacaggcaaaactaggcgaccctttgtcttgtagcagtgaatgatgtggacaa 28164421  T
Q  276 gttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaat 333  Q
    |||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||||||    
T  28164422 gttcgtccaaacaaaatgaagaagaggcatagttgatagataacacaggaataaaaat 28164479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 200 - 351
Target Start/End: Original strand, 268341 - 268492
Alignment:
Q  200 tgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaag 299  Q
    |||| ||| ||||| ||| |||| || ||||||| ||  ||||||||| || ||||||| ||||||||||| |||||||| ||||||||||| |||||||    
T  268341 tgagtaggatccacgccatagaagacgggcaaaatgagacgaccctttttcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaag 268440  T
Q  300 aggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggc 351  Q
    ||||||||||||||||||||||| ||||||||||||| || || ||||||||    
T  268441 aggcatagttgatagaaaacacaggaataaaaatcctagactcttcaatggc 268492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 200 - 333
Target Start/End: Original strand, 29273767 - 29273900
Alignment:
Q  200 tgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaag 299  Q
    |||| ||| ||||| ||| |||| |||||||||| ||  |||||||||||| ||||||| ||||||||||| |||||||| ||||||||||| |||||||    
T  29273767 tgagtaggatccacgccatagaagacaggcaaaatgagacgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaag 29273866  T
Q  300 aggcatagttgatagaaaacacaagaataaaaat 333  Q
    ||||||||||||||||||||||| ||||||||||    
T  29273867 aggcatagttgatagaaaacacaggaataaaaat 29273900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 69; Significance: 7e-31; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 166 - 378
Target Start/End: Complemental strand, 27672 - 27460
Alignment:
Q  166 tgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatg 265  Q
    ||||||||| ||||| || || ||||||||||||||||||||||||||| || ||||||  |||||||| | ||| |  |||  | || |||||||||||    
T  27672 tgctttaccataactgcccttgtgatgtcgcacatgagaaggttccacatcatagaaaattggcaaaacaaggcgccgattttccttgaagcaatgaatg 27573  T
Q  266 atgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatgtgctg 365  Q
    ||||| |||||||| ||||| ||||| |||||||| ||||| |||||||| || ||| |||| |||||||| ||||| |||||| | |||| | ||| ||    
T  27572 atgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagattcttcaatgaccttgaaaagtgatg 27473  T
Q  366 gtgtgatttcatc 378  Q
     ||| ||||||||    
T  27472 atgttatttcatc 27460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 154 - 374
Target Start/End: Complemental strand, 43202 - 42982
Alignment:
Q  154 atgctcagccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtg 253  Q
    ||||||||||| ||||||||| ||||| ||  | ||||||| ||| | ||||||||||||| || ||||||  |||||||| | ||| || ||| || ||    
T  43202 atgctcagccagtgctttaccataactgccaatctgatgtctcacgttagaaggttccacatcatagaaaattggcaaaactaggcgtccatttttcttg 43103  T
Q  254 tagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctt 353  Q
     |||| ||||||||||| |||||||| ||||| ||||| |||||||| ||||| |||||||| || ||| |||| |||||||| || || |||||||| |    
T  43102 cagcagtgaatgatgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggcct 43003  T
Q  354 tgagatgtgctggtgtgattt 374  Q
    ||| | ||| |||||| ||||    
T  43002 tgaaaagtgatggtgttattt 42982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 166 - 380
Target Start/End: Complemental strand, 34949 - 34735
Alignment:
Q  166 tgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatg 265  Q
    ||||||||| ||||| || || ||||||||||| ||||||||||||||| || ||||||  |||||||| |  || ||  ||  | || |||| ||||||    
T  34949 tgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactagacgcccgctttccttgaagcagtgaatg 34850  T
Q  266 atgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatgtgctg 365  Q
    ||||| |||||||| ||||| ||||| |||||||| ||||| |||||||| || ||| |||| |||||||| || || |||||||| |||| | ||| ||    
T  34849 atgtggacaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagtgatg 34750  T
Q  366 gtgtgatttcatctc 380  Q
    |||| ||||||||||    
T  34749 gtgttatttcatctc 34735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 356
Target Start/End: Complemental strand, 117032 - 116830
Alignment:
Q  154 atgctcagccaatgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtg 253  Q
    |||||| |||| ||||||||| ||||| || || ||||||||||| ||||||||||||||| |  ||||||| ||| |||| | ||| || |||    ||    
T  117032 atgctcggccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcgtagaaaactggctaaactaggcgcccattttctttg 116933  T
Q  254 tagcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctt 353  Q
     |||| ||||| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||| || | | |||| |||||||| || || |||||||| |    
T  116932 aagcagtgaataatgtggacaagttcatccaagcaaaaggaagaagaagcataattgatagacaaaataggaatgaaaatcctagactcttcaatggcct 116833  T
Q  354 tga 356  Q
    |||    
T  116832 tga 116830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 255 - 378
Target Start/End: Complemental strand, 3279823 - 3279700
Alignment:
Q  255 agcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggcttt 354  Q
    |||||||||||||||| |||||||| |||||||||||   |||||| |||||||||||||| || ||  ||||||||||| |||| || || ||||| ||    
T  3279823 agcaatgaatgatgtggacaagttcgtccaaacaaaatatagaagaagcatagttgatagagaagaccggaataaaaatcatggactcttcgatggcctt 3279724  T
Q  355 gagatgtgctggtgtgatttcatc 378  Q
    || | ||| | |||||||||||||    
T  3279723 gacaagtgattgtgtgatttcatc 3279700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 17993736 - 17993789
Alignment:
Q  255 agcaatgaatgatgtgaacaagttcatccaaacaaaacgaagaagaggcatagt 308  Q
    |||| ||||||||||| |||||||| || |||||||| |||||||| |||||||    
T  17993736 agcattgaatgatgtggacaagttcgtctaaacaaaatgaagaagaagcatagt 17993789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 380
Target Start/End: Original strand, 10 - 94
Alignment:
Q  296 gaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatgtgctggtgtgatttcatctc 380  Q
    |||| ||| |||||||||||||||||| ||||||||||||| ||||| || ||||| |||||  ||| |||||||||||||||||    
T  10 gaagtggcgtagttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctc 94  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 166 - 375
Target Start/End: Original strand, 58245 - 58454
Alignment:
Q  166 tgctttaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatg 265  Q
    ||||||||| ||||| || |  ||||||||||| ||||||||||||||  || ||||||  |||||||| | ||| || | |  |  | |||| ||||||    
T  58245 tgctttaccataacttccatcttgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattcctcgaagcagtgaatg 58344  T
Q  266 atgtgaacaagttcatccaaacaaaacgaagaagaggcatagttgatagaaaacacaagaataaaaatcctggattcatcaatggctttgagatgtgctg 365  Q
    ||||| |||||||| | ||| ||||| |||||||| |||||||||||||| || ||  |||| |||||||| || || | |||||| |||| | ||| ||    
T  58345 atgtggacaagttcgttcaagcaaaatgaagaagaagcatagttgatagacaagacgggaatgaaaatcctagactctttaatggccttgaaaagtgatg 58444  T
Q  366 gtgtgatttc 375  Q
    |||| |||||    
T  58445 gtgttatttc 58454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 188 - 321
Target Start/End: Complemental strand, 16689213 - 16689080
Alignment:
Q  188 tgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtgtagcaatgaatgatgtgaacaagttcatccaaac 287  Q
    ||||||| |||||| ||||| |||||  || |||||||||||||||| |  ||||| ||||   || ||| || ||||||||  ||||||||||||||||    
T  16689213 tgatgtctcacatgcgaaggatccacgtcatagaaaacaggcaaaactagccgaccttttgcactgaagccatcaatgatgttgacaagttcatccaaac 16689114  T
Q  288 aaaacgaagaagaggcatagttgatagaaaacac 321  Q
    ||||||| ||| | ||||||||  ||||||||||    
T  16689113 aaaacgaggaaaatgcatagttcttagaaaacac 16689080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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