View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7037_high_1 (Length: 382)
Name: NF7037_high_1
Description: NF7037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7037_high_1 |
 | |
|
| [»] scaffold0042 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 14878043 - 14877692
Alignment:
| Q |
18 |
gaaagctgtttatggaggaccagctaaaggaggggatggtgctcttcctggtcaagctgtctttcatattccttttacaaatgataaaggagagaaaggt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14878043 |
gaaagctgtttatggaggaccagctaaaggaggggatggtgctcttcctggtcaagctgtctttcatattccatttacaaatgataaaggagagaaaggt |
14877944 |
T |
|
| Q |
118 |
ttggttataccagnnnnnnngccaactcaagtcatggagaggttggttaaagagttggatagtgttcttaagaacaacattaaccagcctagtaagggtg |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14877943 |
ttggttataccagtttttttgccaactcaagtcatggagaggttggttaaagagttggatagtgttcttaagaacaacattaaccagcctactaagggtg |
14877844 |
T |
|
| Q |
218 |
atcacaaatttggcattattaaatcttcgttgtagtcctttaaaaatgtttttgttgaatttgctttgtatcgaatagggttatgtttggtgtgattata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
14877843 |
atcacaaatttggcattattaaatcttcgttgtagtcctttaaatatgtttttgttgaatttgctttttatcg---agggttatgtttggtgtgattata |
14877747 |
T |
|
| Q |
318 |
tgtatacacactactagatgttgcaaaagaaaaattaccttgatcaaagcaacacca |
374 |
Q |
| |
|
| | || |||| ||||||||||| |||||||| ||||||||| |||||||||||| |
|
|
| T |
14877746 |
tatgtatacac--ctagatgttgcgcaagaaaaaataccttgattaaagcaacacca |
14877692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 28 - 263
Target Start/End: Complemental strand, 14786178 - 14785943
Alignment:
| Q |
28 |
tatggaggaccagctaaaggaggggatggtgctcttcctggtcaagctgtctttcatattccttttacaaatgataaaggagagaaaggtttggttatac |
127 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| | ||||||||| ||| ||||||||| ||||| | ||||| |||||||||| ||||||||||||||| |
|
|
| T |
14786178 |
tatggaggaccagctagaggagcagatggtgatattcctggtcttgctagctttcatatacctttcaaaaatgctaaaggagaggaaggtttggttatac |
14786079 |
T |
|
| Q |
128 |
cagnnnnnnngccaactcaagtcatggagaggttggttaaagagttggatagtgttcttaagaacaacattaaccagcctagtaagggtgatcacaaatt |
227 |
Q |
| |
|
|| |||| |||||||||||||||||| |||||||| |||||||||| ||||||| |||| |||| |||||| |||| ||||| | |||| |
|
|
| T |
14786078 |
cattttattttccaaatcaagtcatggagaggtttgttaaagaaatggatagtgtgcttaagagtaacactaacaagcctactaagtgtgataaaaaatc |
14785979 |
T |
|
| Q |
228 |
tggcattattaaatcttcgttgtagtcctttaaaaa |
263 |
Q |
| |
|
|| || ||| ||||| ||||||||||||||||| |
|
|
| T |
14785978 |
cggtatcattgtttcttcattgtagtcctttaaaaa |
14785943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 14767104 - 14766915
Alignment:
| Q |
19 |
aaagctgtttatggaggaccagctaaaggaggggatggtgctcttcctggtcaagctgtctttcatattccttttacaaatgataaaggagagaaaggtt |
118 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| | ||||||| | |||||| ||| |||| |||| ||||| | ||||| |||||||||| |||||| |
|
|
| T |
14767104 |
aaagctgtatatggtggaccagctaaaggaggagttggtgctatacctggtgttgctagcttttatatacctttcaaaaatgctaaaggagaggaaggtt |
14767005 |
T |
|
| Q |
119 |
tggttataccagnnnnnnngccaactcaagtcatggagaggttggttaaagagttggatagtgttcttaagaacaacattaaccagccta |
208 |
Q |
| |
|
||||||||||| ||| |||||| |||||||| ||| ||||||||||| |||||||| |||||||||||||| ||||| |||| |
|
|
| T |
14767004 |
tggttataccactttgtttaccagctcaagccatggagaagttcgttaaagagttagatagtgtgcttaagaacaacatcaaccaaccta |
14766915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 14759697 - 14759852
Alignment:
| Q |
18 |
gaaagctgtttatggaggaccagctaaaggaggggatggtgctcttcctggtcaagctgtctttcatattccttttacaaatgataaaggagagaaaggt |
117 |
Q |
| |
|
||||||| | ||||||||| ||||||||||| |||| |||| |||||||||||||||| |||||||| ||||| | ||||| ||||||||| ||||| |
|
|
| T |
14759697 |
gaaagctctctatggaggaatggctaaaggaggtgatgttgctattcctggtcaagctgtatttcatatacctttcaaaaatgctaaaggagaagaaggt |
14759796 |
T |
|
| Q |
118 |
ttggttataccagnnnnnnngccaactcaagtcatggagaggttggttaaagagtt |
173 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14759797 |
ttggttataccgtttttcttgcctgctcaagtcatggagaggttggttaaagagtt |
14759852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 113 - 217
Target Start/End: Complemental strand, 14873217 - 14873113
Alignment:
| Q |
113 |
aaggtttggttataccagnnnnnnngccaactcaagtcatggagaggttggttaaagagttggatagtgttcttaagaacaacattaaccagcctagtaa |
212 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| |||||||||||| |||||||||||||| |||| ||||||||||| |||||||| |||| || |
|
|
| T |
14873217 |
aaggtttggttataccagtttgtttgccaactaaagccatggagaggttcattaaagagttggatggtgtgcttaagaacaaaattaaccaacctactat |
14873118 |
T |
|
| Q |
213 |
gggtg |
217 |
Q |
| |
|
||||| |
|
|
| T |
14873117 |
gggtg |
14873113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 84103 - 83864
Alignment:
| Q |
18 |
gaaagctgtttatggaggaccagctaaaggaggggatggtgctcttcctggtcaagctgtctttcatattccttttacaaatgataaaggagagaaaggt |
117 |
Q |
| |
|
||||||||||||||||||| ||||| || ||| |||||| || ||||||| || | || |||| ||||||| ||||| |||||||||| ||||| |
|
|
| T |
84103 |
gaaagctgtttatggaggattagctagagcaggagatggtactaatcctggtatttctaccatttatataccttttaaaaatgctaaaggagaggaaggt |
84004 |
T |
|
| Q |
118 |
ttggttataccagnnnnnnngccaactcaagtcatggagaggttggttaaagagttggatagtgttcttaagaacaacattaaccagcctagtaagggtg |
217 |
Q |
| |
|
|| |||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| || ||||| |
|
|
| T |
84003 |
tttgttataccagttttttttccaactcaagtcatcgagaggttggttaaagagttggataaagttcttaagaacaacattaactcgcctactatgggtg |
83904 |
T |
|
| Q |
218 |
atcacaaatttggcattattaaatcttcgttgtagtcctt |
257 |
Q |
| |
|
|| |||| ||| || ||||| ||||||||||||||||| |
|
|
| T |
83903 |
atagaaaatctggaatcattaattcttcgttgtagtcctt |
83864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 11999695 - 11999596
Alignment:
| Q |
18 |
gaaagctgtttatggaggaccagctaaaggaggggatggtgctcttcctggtcaagctgtctttcatattccttttacaaatgataaaggagagaaaggt |
117 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||| || |||||| ||| |||| ||| ||||| ||| |||||| ||||| |||||||||| ||||| |
|
|
| T |
11999695 |
gaaacctgtgtatggaggaccagctaaaggaggagacggtgctaatcccggtcttgcttgctttcgtatagcttttaaaaatgttaaaggagaggaaggt |
11999596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University