View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7037_high_2 (Length: 268)
Name: NF7037_high_2
Description: NF7037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7037_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 24 - 252
Target Start/End: Complemental strand, 50423450 - 50423222
Alignment:
| Q |
24 |
agattaccttcacctcctccacaaactccactcttaagtctaaactatggcacaataagttctattcatgataatttcacaagatcacacaatcaaatac |
123 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
50423450 |
agattaccttggcctcctccacaaactccactcttaagtctaaactaaggcacaataagttctattcacgataatttcacaagatcacacaatcaaatac |
50423351 |
T |
|
| Q |
124 |
acatttcacataacattcaataattataattgtcacggtatagataaacactaataataatacgtcgttgcacgttgcaatacattgtttcttgtatttg |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
50423350 |
acatttcacataacattcaataattataattgtcacggtatagataaacactaataataatacgtcattgcacgttgcaatacattgtttcttgtatttg |
50423251 |
T |
|
| Q |
224 |
tacattttaaatttttgcatatgttcctt |
252 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
50423250 |
tacattttaaatttttgcatatgttcctt |
50423222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 14425825 - 14425772
Alignment:
| Q |
94 |
ataatttcacaagatcacacaatcaaatacacat--ttcacataacattcaata |
145 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || ||||||||| |||||||| |
|
|
| T |
14425825 |
ataatttcacaagatcacacaattaaatacatatacttcacataatattcaata |
14425772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University