View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7038_high_9 (Length: 389)
Name: NF7038_high_9
Description: NF7038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7038_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 4176250 - 4176608
Alignment:
| Q |
18 |
agaccgaacaccaagcctgaaaattaaacaatgaataaagtgttatcattaaagtgatgatggtggataaataatagattgaggaactagagttgaaacc |
117 |
Q |
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| T |
4176250 |
agaccgaacaccaagcctggaaattaaacaatgaataaagtgttatcattagagtgatgatggtggataaataatagattgaggaactagagttgaaacc |
4176349 |
T |
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| Q |
118 |
tgtgaagggatagtgcagttgcaaggcctgctatcccaccacccacgattacaacatgttcctttctgacatcagaagattgagccttgattgttaattt |
217 |
Q |
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| T |
4176350 |
tgtgaagggatagtgcagttgcaaggcctgctatcccaccacccacgattacaacatgttcctttctgacatcagaagattgagccttgattgttaattt |
4176449 |
T |
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| Q |
218 |
ggaatatctgagggatccaattctggcacgacaaggcgatgatgtaagaattcgtttaagaaacataaaagacgaagttgttgtagccatgatgttcaat |
317 |
Q |
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| T |
4176450 |
ggaatatctgagggatccaattctggcacgacaaggcgatgatgtaagaattcgtttaagaaacataaaagacgaagttgttgtagccatgatgttcaat |
4176549 |
T |
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| Q |
318 |
tctgtttgtgtttgataggagtataacgttgagttgtagagtgatcgtgtgttgtgtgt |
376 |
Q |
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| T |
4176550 |
tctgtttgtgtttgataggagtataacgttgagttgtagagtgatcgtgtgttgcgtgt |
4176608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 104 - 252
Target Start/End: Original strand, 4172199 - 4172341
Alignment:
| Q |
104 |
ctagagttgaaacctgtgaagggatagtgcagttgcaaggcctgctatcccaccacccacgattacaacatgttcctttctgacatcagaagattgagcc |
203 |
Q |
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| T |
4172199 |
ctagagttgaaacctgtgaagggatagagcagttgcaaggcctgcaatgccaccacccacaatgacaacatgttccttttgga---ctgaagattgaacc |
4172295 |
T |
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| Q |
204 |
ttgattgttaatttggaatatctgagggatccaattctggcacgacaag |
252 |
Q |
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| T |
4172296 |
ttga---ttaatttggaacttctgagagatccaattctggtatgacaag |
4172341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 4172358 - 4172413
Alignment:
| Q |
281 |
cataaaagacgaagttgttgtagccatg---atgttcaattctgtttgtgtttgat |
333 |
Q |
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| T |
4172358 |
cataaaagacgaggttgttgtagccatggacatgttcaattcagattgtgtttgat |
4172413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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