View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7038_low_18 (Length: 269)
Name: NF7038_low_18
Description: NF7038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7038_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 53351783 - 53352010
Alignment:
| Q |
24 |
gcaattgtagaaggatagataaatatttcaaataaaacaaaaagaaaagaagtaaagcatgaagataaaacctcttgagccagcttagaccatttgaatt |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53351783 |
gcaattgtagaaggatagataaatatttcaaataaaacaaaaagaaaagaagtaaagcatgaagataaaacctcttgagccagcttagaccatttgaatt |
53351882 |
T |
|
| Q |
124 |
caccaaagttgttaaagaactgaaagactttggttttttcttcttcactaaacggccccttcttcacatctggtcgaaggtgattataccatcttagacg |
223 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53351883 |
caccaaagttgttaaagaaccgaaagactttggttttttcttcttcactaaacggccccttcttcacatctggtcgaaggtgattataccatcttagacg |
53351982 |
T |
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| Q |
224 |
acaacttttaccgcaacgtataagcccc |
251 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
53351983 |
acaacttttaccgcaacgtataagcccc |
53352010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 37 - 250
Target Start/End: Original strand, 26033391 - 26033606
Alignment:
| Q |
37 |
gatagataaatatttcaaataaaacaaaaagaaaagaagtaaagcatgaagataaaa---cctcttgagccagcttagaccatttgaattcaccaaagtt |
133 |
Q |
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||||||| |||||||||||| ||| ||| ||||||||||||||||||| | ||| |||| | |||||||||||||||||||||||||||| | || |
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| T |
26033391 |
gatagatcaatatttcaaattaaagaaagt-aaaagaagtaaagcatgaataagaaattacctcctcagccagcttagaccatttgaattcaccatactt |
26033489 |
T |
|
| Q |
134 |
gttaaagaactgaaagactttggttttttcttcttcactaaacggccccttcttcacatctggtcgaaggtgattataccatcttagacgacaactttta |
233 |
Q |
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||| ||||| ||| ||||| |||| ||||||||||||||| || ||||| |||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
26033490 |
tttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcacatctggttgcaggtgattataccatcttagacgacaactttta |
26033589 |
T |
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| Q |
234 |
ccgcaacgtataagccc |
250 |
Q |
| |
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||||||||||||||||| |
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| T |
26033590 |
ccgcaacgtataagccc |
26033606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 93 - 251
Target Start/End: Complemental strand, 38180807 - 38180649
Alignment:
| Q |
93 |
acctcttgagccagcttagaccatttgaattcaccaaagttgttaaagaactgaaagactttggttttttcttcttcactaaacggccccttcttcacat |
192 |
Q |
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||||| |||||||||||||||||||||||||||||| | || || |||||| ||| ||||| | |||||||||||||||||| || ||||| ||||||| |
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| T |
38180807 |
acctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacat |
38180708 |
T |
|
| Q |
193 |
ctggtcgaaggtgattataccatcttagacgacaacttttaccgcaacgtataagcccc |
251 |
Q |
| |
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||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38180707 |
ctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagcccc |
38180649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 93 - 251
Target Start/End: Original strand, 38190324 - 38190482
Alignment:
| Q |
93 |
acctcttgagccagcttagaccatttgaattcaccaaagttgttaaagaactgaaagactttggttttttcttcttcactaaacggccccttcttcacat |
192 |
Q |
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||||| |||||||||||||||||||||||||||||| | || || |||||| ||| ||||| | |||||||||||||||||| || ||||| ||||||| |
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| T |
38190324 |
acctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacat |
38190423 |
T |
|
| Q |
193 |
ctggtcgaaggtgattataccatcttagacgacaacttttaccgcaacgtataagcccc |
251 |
Q |
| |
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||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38190424 |
ctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagcccc |
38190482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 93 - 251
Target Start/End: Complemental strand, 38208031 - 38207873
Alignment:
| Q |
93 |
acctcttgagccagcttagaccatttgaattcaccaaagttgttaaagaactgaaagactttggttttttcttcttcactaaacggccccttcttcacat |
192 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| | || || |||||| ||| ||||| | |||||||||||||||||| || ||||| ||||||| |
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| T |
38208031 |
acctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacat |
38207932 |
T |
|
| Q |
193 |
ctggtcgaaggtgattataccatcttagacgacaacttttaccgcaacgtataagcccc |
251 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38207931 |
ctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagcccc |
38207873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 93 - 251
Target Start/End: Original strand, 38217549 - 38217707
Alignment:
| Q |
93 |
acctcttgagccagcttagaccatttgaattcaccaaagttgttaaagaactgaaagactttggttttttcttcttcactaaacggccccttcttcacat |
192 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| | || || |||||| ||| ||||| | |||||||||||||||||| || ||||| ||||||| |
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| T |
38217549 |
acctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacat |
38217648 |
T |
|
| Q |
193 |
ctggtcgaaggtgattataccatcttagacgacaacttttaccgcaacgtataagcccc |
251 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38217649 |
ctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagcccc |
38217707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 93 - 251
Target Start/End: Complemental strand, 38456167 - 38456009
Alignment:
| Q |
93 |
acctcttgagccagcttagaccatttgaattcaccaaagttgttaaagaactgaaagactttggttttttcttcttcactaaacggccccttcttcacat |
192 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| | || || |||||| ||| ||||| | |||||||||||||||||| || ||||| ||||||| |
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|
| T |
38456167 |
acctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcacat |
38456068 |
T |
|
| Q |
193 |
ctggtcgaaggtgattataccatcttagacgacaacttttaccgcaacgtataagcccc |
251 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38456067 |
ctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagcccc |
38456009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 230
Target Start/End: Complemental strand, 38447258 - 38447136
Alignment:
| Q |
108 |
ttagaccatttgaattcaccaaagttgttaaagaactgaaagactttggttttttcttcttcactaaacggccccttcttcacatctggtcgaaggtgat |
207 |
Q |
| |
|
||||||||||||||| ||||||| || ||| |||||||||||||| ||| |||||||| |||||| || ||||| || ||| | |||| |||| || |
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| T |
38447258 |
ttagaccatttgaatccaccaaacttcttacgtaactgaaagactttattttcttcttctttactaaatggacccttttttacaccaggtcttaggttat |
38447159 |
T |
|
| Q |
208 |
tataccatcttagacgacaactt |
230 |
Q |
| |
|
|||||||||| | ||| |||||| |
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|
| T |
38447158 |
tataccatctaaaacggcaactt |
38447136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 38342621 - 38342533
Alignment:
| Q |
49 |
tttcaaataaaacaaaaagaaaag----aagtaaagcatgaagataaa---acctcttgagccagcttagaccatttgaattcaccaaa |
130 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| | ||| ||||| |||||| ||||||||||||||| |||||||| |
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| T |
38342621 |
tttcaaataaaagaaaaagaaaaggaagaagtaaagcatgaacaaaaatatacctcgagagccatcttagaccatttgaactcaccaaa |
38342533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 38446814 - 38446726
Alignment:
| Q |
49 |
tttcaaataaaacaaaaagaaaag----aagtaaagcatgaagataaa---acctcttgagccagcttagaccatttgaattcaccaaa |
130 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| | ||| ||||| |||||| ||||||||||||||| |||||||| |
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|
| T |
38446814 |
tttcaaataaaagaaaaagaaaaggaagaagtaaagcatgaacaaaaatatacctcgagagccatcttagaccatttgaactcaccaaa |
38446726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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