View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7038_low_19 (Length: 231)
Name: NF7038_low_19
Description: NF7038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7038_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 73 - 215
Target Start/End: Original strand, 17517666 - 17517808
Alignment:
| Q |
73 |
tcttcattagataaaacttcattaaattcggctaggtgtgaataacattacctccctcttagttctcttgtcttctgaattatttgacatgccatcatcc |
172 |
Q |
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| T |
17517666 |
tcttcattagataaaacttcattaaattcagctaggtgtcaataacattacctccctcttagttctcttgtcttctgaattaggtgacatgccatcatcc |
17517765 |
T |
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| Q |
173 |
atcatagattgatcactactagtgttggtagtaacaggattgg |
215 |
Q |
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| T |
17517766 |
atcatagattgatcactactagtattggtagtaacaggattgg |
17517808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 90 - 215
Target Start/End: Original strand, 17532753 - 17532881
Alignment:
| Q |
90 |
ttcattaaattcggctaggtgtgaataacattacctcc---ctcttagttctcttgtcttctgaattatttgacatgccatcatccatcatagattgatc |
186 |
Q |
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| T |
17532753 |
ttcattaaattatgttaggcgttaataacattacctccgtactcttagttctcttctcttttgaattgggtgacatgccatcatccatcatagattgatc |
17532852 |
T |
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| Q |
187 |
actactagtgttggtagtaacaggattgg |
215 |
Q |
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| T |
17532853 |
actactagtattggtagtaataggattgg |
17532881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 90 - 215
Target Start/End: Original strand, 16859800 - 16859925
Alignment:
| Q |
90 |
ttcattaaattcggctaggtgtgaataacattacctccctcttagttctcttgtcttctgaattatttgacatgccatcatccatcatagattgatcact |
189 |
Q |
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| T |
16859800 |
ttcattaagtttagctaggtgttaataacattacctccctcttgaattttttgtcttctaaattaggtggcatgtcatcatccatcaaagattgatcact |
16859899 |
T |
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| Q |
190 |
actagtgttggtagtaacaggattgg |
215 |
Q |
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| T |
16859900 |
actagtattggtagtaacaggattgg |
16859925 |
T |
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