View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7038_low_20 (Length: 217)
Name: NF7038_low_20
Description: NF7038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7038_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 4027326 - 4027147
Alignment:
| Q |
18 |
ataattaacacattgtaaagagaaatatttattcttccattgaattctcatcgcagatttcagaagtattcaccaccatcattcaagatgccctctaatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4027326 |
ataattaacacattgtaaagagaaatatttattcttccattgaattctcatcgcagatttcagaagtattcaccaccatcattcaagatgccctctaatt |
4027227 |
T |
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| Q |
118 |
tgaattccctccacaaccagccaatgtgctaccgtcactaaaactaatacatctcatctttattagtccactttttctct |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4027226 |
tgaattccctccacaaccagccaatgtgctaccgtcactaaaactaatacatctcatctttattagtccactttttctct |
4027147 |
T |
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Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 13962033 - 13962212
Alignment:
| Q |
18 |
ataattaacacattgtaaagagaaatatttattcttccattgaattctcatcgcagatttcagaagtattcaccaccatcattcaagatgccctctaatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13962033 |
ataattaacacattgtaaagagaaatatttattcttccattgaattctcatcgcagatttcagaagtattcaccaccatcattcaagatgccctctaatt |
13962132 |
T |
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| Q |
118 |
tgaattccctccacaaccagccaatgtgctaccgtcactaaaactaatacatctcatctttattagtccactttttctct |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13962133 |
tgaattccctccacaaccagccaatgtgctaccgtcactaaaactaatacatctcatctttattagtccactttttctct |
13962212 |
T |
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