View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7038_low_3 (Length: 693)
Name: NF7038_low_3
Description: NF7038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7038_low_3 |
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| [»] scaffold0163 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 87 - 349
Target Start/End: Original strand, 7725183 - 7725445
Alignment:
| Q |
87 |
cttgacgggatcaccaaaacaatagctatctatctatgtatagtccagccctatcatatcagagatagaaatatactattacactgtatgaaaccaaaac |
186 |
Q |
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| T |
7725183 |
cttgacgggatcaccaaaacaatagctatctatctatgtatagtccagccctatcatatcagagatagaaatatactattacactgtatgaaaccaaaac |
7725282 |
T |
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| Q |
187 |
atcagcaagttggagtcaatcctatctcatcaaattatacaatacttttgaagatttatggttgtctctcatgtgatatctaacacatcaaagtaacaag |
286 |
Q |
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| T |
7725283 |
atcagcaagttggagtcaatcctatttcatcaaattatacaatacttttgaagatttatggttgtctctcatgtgatatctaacacatcaaagtaacaag |
7725382 |
T |
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| Q |
287 |
actcaacatgactaatatcaaagaaatcaaaactgcatgtgtagtgtcttcatagagtaagaa |
349 |
Q |
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| T |
7725383 |
actcaacatgactaatatcaaagaaatcaaaactgcatgtgtagtgtcttcatagagtaagaa |
7725445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 392 - 673
Target Start/End: Original strand, 7725594 - 7725871
Alignment:
| Q |
392 |
ataatggcaagatgtatgaacaagagtgaaagcttct-gcattttaatatt-acaatttacaaacactctgccatnnnnnnnnnnnnnntgaatgcaata |
489 |
Q |
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| T |
7725594 |
ataatggtaagatgtatgaacaagagtgaaagcttcttgcatttttatatttacaatttacaaacactctgccataaaaaaaaat----tgaatgcaata |
7725689 |
T |
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| Q |
490 |
atgataactatcatctatcaaccatgatctatgaagtgttcatctgattaacaaacacatcatacctacataatatgcatatattggaaatgtgac--nn |
587 |
Q |
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| T |
7725690 |
atgataactatcatttatcaaccatgatctatgaagt--tcatctgattaacaaacacatcatacctacttaatatgcatatattggaaatgcgactttt |
7725787 |
T |
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| Q |
588 |
nnnnnnngaagaagcaaaaatggtatatatattcacactagcagaagacataccaaaaaggaccctcaaaaatacagagttgctgt |
673 |
Q |
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| T |
7725788 |
ttttttttaaaaagcaaaaatgatatatatattcacactagcagaagacataccaaagaggacgctcaaaaat--agagttgctgt |
7725871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 392 - 464
Target Start/End: Original strand, 7736200 - 7736273
Alignment:
| Q |
392 |
ataatggcaagatgtatgaacaagagtgaaagcttc-tgcattttaatattacaatttacaaacactctgccat |
464 |
Q |
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| T |
7736200 |
ataatggcaagatgtatgaacaagagtgaatgtttcttgcattttaatattacaatttacaagtactctgccat |
7736273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 481 - 585
Target Start/End: Original strand, 7736284 - 7736393
Alignment:
| Q |
481 |
aatgcaataatgataactatcatctatcaaccatgatctatgaagtgttcatctgattaacaaacacatcatacctac-------ataatatgcatatat |
573 |
Q |
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| T |
7736284 |
aatgcaagaatgaaaactatcatttctcaactatgatctatgaa--gttcatctgattaagcaacacatcataactgctattgcattaatatgcatatat |
7736381 |
T |
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| Q |
574 |
tggaaatgtgac |
585 |
Q |
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| T |
7736382 |
tggaaatgtgac |
7736393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0163 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 736 - 775
Alignment:
| Q |
248 |
ttgtctctcatgtgatatctaacacatcaaagtaacaaga |
287 |
Q |
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| T |
736 |
ttgtctttcatgtgatatctaacacatcaaagtaacaaga |
775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 15098119 - 15098158
Alignment:
| Q |
248 |
ttgtctctcatgtgatatctaacacatcaaagtaacaaga |
287 |
Q |
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| T |
15098119 |
ttgtctttcatgtgatatctaacacatcaaagtaacaaga |
15098158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 596 - 625
Target Start/End: Complemental strand, 21394073 - 21394044
Alignment:
| Q |
596 |
aagaagcaaaaatggtatatatattcacac |
625 |
Q |
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| T |
21394073 |
aagaagcaaaaatggtatatatattcacac |
21394044 |
T |
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