View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7038_low_4 (Length: 671)
Name: NF7038_low_4
Description: NF7038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7038_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 511; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 70 - 652
Target Start/End: Original strand, 12736422 - 12737003
Alignment:
| Q |
70 |
gacataattaaataaatgtatacccgtttagccctagcaagaagaatactagaatatccaggatcaatgtttctgaatgcaatggatgatgccgcaagcc |
169 |
Q |
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| T |
12736422 |
gacataattaaataaatgtatacccgtttagccctagcaagaagaatcctagaatatccacgattaatgtttctgaaagcaatggatgacgccgcaagcg |
12736521 |
T |
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| Q |
170 |
cggctgcaatctcggctgaaacctccgaaccaggtctcgtcgcggacaaataataggttgtcctagaagtgtccatgtcttctggcctttcccaacaatc |
269 |
Q |
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| T |
12736522 |
cggctgcaatctcggctgaaacctccgaaccaggtcttgtcgcggacaaataataggttgtcctagaagtgtccatgtcttctggtctttcccaacaatc |
12736621 |
T |
|
| Q |
270 |
atgatcactaatgggatcgccaacttgtgctacaacaatatttgatctttttgttgctttgaggaaataatcagttccccaacgaattgcttccaatgca |
369 |
Q |
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| T |
12736622 |
atggtcactaatgggatcgccaacttgtgctacaacaatatttggtctttttgttgctttgaggaaataatcagttccccaacgaattgcttccaatgca |
12736721 |
T |
|
| Q |
370 |
tgttgcaaatccggatccatgagttctccaaattccaccacactccaagccagcatggtggttgtatatgccattgggaaattgaattttacattgtcac |
469 |
Q |
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| T |
12736722 |
tgttgcaaatccggacccatgagttctccaaattccaccacactccaagccagcatggtggttgtatatgccattgggaaattgaattttacattgtcac |
12736821 |
T |
|
| Q |
470 |
cagcgtcatagtaaccaccaaccatgttcatctgggtttggaatacaagtcaagattagcaaaatcaaatatttgattaacatattaaatcaaggaataa |
569 |
Q |
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| T |
12736822 |
cagcatcatagtaaccaccaaccatgttcatctgggtttggaatacaagtcaagattagc-aaatcaaatatttgactaacatattaaatcaaggaataa |
12736920 |
T |
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| Q |
570 |
atatagagaattaaagcgtgaaccatcaaaatttatatataacggttcagataaataactccttaatattttaatgcataatc |
652 |
Q |
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| T |
12736921 |
atatagagaattaaaccgtgaaccatcaaaatttatatataacggttcagatcaataactccttaaaattttaatgcataatc |
12737003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 76 - 514
Target Start/End: Original strand, 12765719 - 12766157
Alignment:
| Q |
76 |
attaaataaatgtatacccgtttagccctagcaagaagaatactagaatatccaggatcaatgtttctgaatgcaatggatgatgccgcaagcccggctg |
175 |
Q |
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| T |
12765719 |
attaaataaatatatacctgtttagccctagcaagaaggacattagaatattgatcatcaatttttctaaatgcaatggatgacgccgcaagtgcggccg |
12765818 |
T |
|
| Q |
176 |
caatctcggctgaaacctccgaaccaggtctcgtcgcggacaaataataggttgtcctagaagtgtccatgtcttctggcctttcccaacaatcatgatc |
275 |
Q |
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| T |
12765819 |
caatctcggctgaaacctccgaacctggcctattttcggacacataataggttgttctagaagtgtccatgtcttctggtctttcccaacaatcatggtc |
12765918 |
T |
|
| Q |
276 |
actaatgggatcgccaacttgtgctacaacaatatttgatctttttgttgctttgaggaaataatcagttccccaacgaattgcttccaatgcatgttgc |
375 |
Q |
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| T |
12765919 |
actaatagggttgccaacttgtgcaacaacaatatttggctttgttgtggctttgaggaaataatcagttccccaacggattgattctaatgcatgttgc |
12766018 |
T |
|
| Q |
376 |
aaatccggatccatgagttctccaaattccaccacactccaagccagcatggtggttgtatatgccattgggaaattgaattttacattgtcaccagcgt |
475 |
Q |
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| T |
12766019 |
aaatccggacccatgagttctccaaattccaccacactccaagccagcatggtggttgtatatgccatagggaaattgaattttacattgtcaccggcat |
12766118 |
T |
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| Q |
476 |
catagtaaccaccaaccatgttcatctgggtttggaata |
514 |
Q |
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| T |
12766119 |
catagtaaccaccaaccaaatccatctgtgtttggaata |
12766157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 437 - 493
Target Start/End: Original strand, 12797102 - 12797158
Alignment:
| Q |
437 |
atgccattgggaaattgaattttacattgtcaccagcgtcatagtaaccaccaacca |
493 |
Q |
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| T |
12797102 |
atgccattggaaaattgaatttcacattgtcaccagcatcatagtaaccaccaacca |
12797158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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