View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7038_low_6 (Length: 486)

Name: NF7038_low_6
Description: NF7038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7038_low_6
NF7038_low_6
[»] chr4 (3 HSPs)
chr4 (296-467)||(53239926-53240097)
chr4 (1-142)||(53239653-53239795)
chr4 (221-274)||(53239874-53239927)
[»] chr1 (11 HSPs)
chr1 (233-367)||(2170927-2171061)
chr1 (1-142)||(28851753-28851894)
chr1 (221-351)||(28851973-28852103)
chr1 (223-366)||(39481993-39482136)
chr1 (1-142)||(21401732-21401873)
chr1 (55-142)||(39482217-39482305)
chr1 (223-290)||(21401582-21401649)
chr1 (254-352)||(6843530-6843628)
chr1 (1-42)||(2170769-2170810)
chr1 (104-142)||(2170793-2170831)
chr1 (300-352)||(21401076-21401127)
[»] chr6 (2 HSPs)
chr6 (223-366)||(10461568-10461711)
chr6 (55-142)||(10461400-10461488)
[»] chr7 (10 HSPs)
chr7 (225-366)||(37502694-37502834)
chr7 (223-342)||(32248241-32248360)
chr7 (225-328)||(47814731-47814834)
chr7 (225-342)||(33427277-33427390)
chr7 (55-142)||(32248441-32248529)
chr7 (258-311)||(8655850-8655903)
chr7 (90-142)||(37502917-37502969)
chr7 (15-65)||(37502975-37503025)
chr7 (71-142)||(33427123-33427194)
chr7 (71-126)||(47814939-47814994)
[»] chr2 (3 HSPs)
chr2 (225-367)||(18747771-18747913)
chr2 (15-104)||(18748931-18749022)
chr2 (254-352)||(4867406-4867503)
[»] chr8 (5 HSPs)
chr8 (227-366)||(34872079-34872218)
chr8 (55-141)||(31371662-31371749)
chr8 (254-366)||(31371439-31371551)
chr8 (97-141)||(34872304-34872348)
chr8 (1-69)||(34872363-34872427)


Alignment Details
Target: chr4 (Bit Score: 160; Significance: 5e-85; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 296 - 467
Target Start/End: Original strand, 53239926 - 53240097
Alignment:
Q  296 attattctattggttaaacatttgagagtaccaaaacactcaattttatttggagtatcaaagaaattgcctaatcataatttgatcatgtgtgttgaag 395  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  53239926 attattctattgattaaacatttgagagtaccaaaacactcaattttatttggagtatcatagaaattgcctaatcataatttgatcgtgtgtgttgaag 53240025  T
Q  396 gaatacattttaagagatgagcatgtaactaaacaatgggatagtttgaattttgtgttgcaacttcgattt 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53240026 gaatacattttaagagatgagcatgtaactaaacaatgggatagtttgaattttgtgttgcaacttcgattt 53240097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 53239653 - 53239795
Alignment:
Q  1 tattaaaggaagccttgttcaaagatgtttgagacaaaattggtacatatatgaagttttgtgttcccag-aagaaaaagaggaggctacgtttcagatg 99  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  53239653 tattaaaggaaaccttgttcaaagatgtttgagacaaaattggtacatatatgaagttttgtgttcccagaaagaaaaagaggaggctacgtttcagatg 53239752  T
Q  100 atgaatgttggagagaaaattgtgatggtggttaatgatttgg 142  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  53239753 atgaatgttggagagaaaattgtgacggtggttaatgatttgg 53239795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 53239874 - 53239927
Alignment:
Q  221 atagaagtgtaccaaaactctttctcttaagttaatctttaataatgttgacat 274  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  53239874 atagaagtgtaccaaaactctttctcttaagtcaatctttaataatgttgacat 53239927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 233 - 367
Target Start/End: Original strand, 2170927 - 2171061
Alignment:
Q  233 caaaactctttctcttaagttaatctttaataatgttgacatagatcatttaattgaaatgatattattctattggttaaacatttgagagtaccaaaac 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2170927 caaaactctttctcttaagttaatctttaataatgttgacatagatcatttaattgaaatgacattattctattggttaaacatttgagagtaccaaaac 2171026  T
Q  333 actcaattttatttggagtatcaaagaaattgcct 367  Q
    ||||||||||||||||||||||| |||||||||||    
T  2171027 actcaattttatttggagtatcatagaaattgcct 2171061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 28851753 - 28851894
Alignment:
Q  1 tattaaaggaagccttgttcaaagatgtttgagacaaaattggtacatatatgaagttttgtgttccc-agaagaaaaagaggaggctacgtttcagatg 99  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||  ||||||||| |||    
T  28851753 tattaaaggaagccttgtttaaagatgtttgagataaaattggtacatatatgaagttttgtgttcccaaaaagaaaaagaggagtttacgtttca-atg 28851851  T
Q  100 atgaatgttggagagaaaattgtgatggtggttaatgatttgg 142  Q
    || ||||||||||||||||||||||| ||||||||||||||||    
T  28851852 ataaatgttggagagaaaattgtgatagtggttaatgatttgg 28851894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 221 - 351
Target Start/End: Original strand, 28851973 - 28852103
Alignment:
Q  221 atagaagtgtaccaaaactctttctcttaagttaatctttaataatgttgacatagatcatttaattgaaatgatattattctattggttaaacatttga 320  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||| ||||||| |||||||||||| |||||| ||||||||||| ||||||||||| |    
T  28851973 atagaagtgtaccaaaactctttttcttaagtcaatctttaataatattgacatggatcatttaattaaaatgacattattctattagttaaacatttaa 28852072  T
Q  321 gagtaccaaaacactcaattttatttggagt 351  Q
    |||||||||||||||||||||||||| ||||    
T  28852073 gagtaccaaaacactcaattttatttagagt 28852103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 223 - 366
Target Start/End: Complemental strand, 39482136 - 39481993
Alignment:
Q  223 agaagtgtaccaaaactctttctcttaagttaatctttaataatgttgacatagatcatttaattgaaatgatattattctattggttaaacatttgaga 322  Q
    |||||||||||||||||||||| ||| | | ||||||||||||||||||||  ||||||||||||||||||| | | ||||||| |||||||||||||||    
T  39482136 agaagtgtaccaaaactctttcccttcaatcaatctttaataatgttgacaaggatcatttaattgaaatgacacttttctattagttaaacatttgaga 39482037  T
Q  323 gtaccaaaacactcaattttatttggagtatcaaagaaattgcc 366  Q
    ||||||||||||| |||||| | | ||||| || ||||||||||    
T  39482036 gtaccaaaacacttaattttgtctagagtaccatagaaattgcc 39481993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 21401873 - 21401732
Alignment:
Q  1 tattaaaggaagccttgttcaaagatgtttgagacaaaattggtacatatatgaagttttgtgttcccagaa--gaaaaagaggaggctacgtttcagat 98  Q
    ||||||||||||| |||| |||| ||||||||||||||||| |||  || ||||||||||||||||| | ||  ||||||||||| | ||| ||| ||||    
T  21401873 tattaaaggaagctttgtacaaatatgtttgagacaaaattcgta--tagatgaagttttgtgttcctaaaaaggaaaaagaggaagttacatttaagat 21401776  T
Q  99 gatgaatgttggagagaaaattgtgatggtggttaatgatttgg 142  Q
    |||||| |||||| ||||||||||||||   |||||||||||||    
T  21401775 gatgaaggttggaaagaaaattgtgatgacagttaatgatttgg 21401732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 55 - 142
Target Start/End: Complemental strand, 39482305 - 39482217
Alignment:
Q  55 agttttgtgttcccagaa-gaaaaagaggaggctacgtttcagatgatgaatgttggagagaaaattgtgatggtggttaatgatttgg 142  Q
    |||||||||||| ||||| |||||||| |||| || || ||||||| |||||| || |||||||||||| |||||||||||||||||||    
T  39482305 agttttgtgttcgcagaaagaaaaagatgaggttaagtctcagatgttgaatgatgaagagaaaattgtaatggtggttaatgatttgg 39482217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 223 - 290
Target Start/End: Complemental strand, 21401649 - 21401582
Alignment:
Q  223 agaagtgtaccaaaactctttctcttaagttaatctttaataatgttgacatagatcatttaattgaa 290  Q
    |||||||||||||||||||||  ||||||||| |||||||||||  |||||| |||||||||||||||    
T  21401649 agaagtgtaccaaaactcttttccttaagttagtctttaataatcctgacattgatcatttaattgaa 21401582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 6843628 - 6843530
Alignment:
Q  254 aatctttaataatgttgacatagatcatttaattgaaatgatattattctattggttaaacatttgagagtaccaaaacactcaattttatttggagta 352  Q
    ||||| |||||||| |||||| ||||||||||||||||||    | || ||||| | ||||||||||||||||| |||||||||||||| ||| |||||    
T  6843628 aatctctaataatgctgacatggatcatttaattgaaatgtcgctcttttattgatcaaacatttgagagtaccgaaacactcaattttgtttagagta 6843530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2170769 - 2170810
Alignment:
Q  1 tattaaaggaagccttgttcaaagatgtttgagacaaaattg 42  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  2170769 tattaaaggaagccttgttcaaagatgtttgagagaaaattg 2170810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 2170793 - 2170831
Alignment:
Q  104 atgttggagagaaaattgtgatggtggttaatgatttgg 142  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  2170793 atgtttgagagaaaattgtgatggtggttaatgatttgg 2170831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 352
Target Start/End: Complemental strand, 21401127 - 21401076
Alignment:
Q  300 ttctattggttaaacatttgagagtaccaaaacactcaattttatttggagta 352  Q
    |||||||||||||| ||| ||| ||| |||||||||||||||| |||||||||    
T  21401127 ttctattggttaaatattcgag-gtatcaaaacactcaattttgtttggagta 21401076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 223 - 366
Target Start/End: Original strand, 10461568 - 10461711
Alignment:
Q  223 agaagtgtaccaaaactctttctcttaagttaatctttaataatgttgacatagatcatttaattgaaatgatattattctattggttaaacatttgaga 322  Q
    |||||||||||||||||||||| ||||| | ||||||||||||||||||||| ||||||||||||||||||| | | |||||||||||||| ||||||||    
T  10461568 agaagtgtaccaaaactctttcccttaaatcaatctttaataatgttgacatggatcatttaattgaaatgacacttttctattggttaaatatttgaga 10461667  T
Q  323 gtaccaaaacactcaattttatttggagtatcaaagaaattgcc 366  Q
    |||||||||||||||||||| ||||||||| ||  |||||||||    
T  10461668 gtaccaaaacactcaattttgtttggagtaccatggaaattgcc 10461711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 55 - 142
Target Start/End: Original strand, 10461400 - 10461488
Alignment:
Q  55 agttttgtgttcccagaa-gaaaaagaggaggctacgtttcagatgatgaatgttggagagaaaattgtgatggtggttaatgatttgg 142  Q
    |||||||||||||||||| ||||||||||||| || ||||||||||||| ||| || |||||||||||| |||||||||||||||||||    
T  10461400 agttttgtgttcccagaaagaaaaagaggaggttaagtttcagatgatgtatgatgaagagaaaattgtaatggtggttaatgatttgg 10461488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 225 - 366
Target Start/End: Complemental strand, 37502834 - 37502694
Alignment:
Q  225 aagtgtaccaaaactctttctcttaagttaatctttaataatgttgacatagatcatttaattgaaatga-tattattctattggttaaacatttgagag 323  Q
    ||||||||||||||||||| || ||||| ||| |||||||||| |||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  37502834 aagtgtaccaaaactcttt-tcataagtcaatatttaataatgctgacatggatcatttaattgaaatgactatt-ttctattggttaaacatttgagag 37502737  T
Q  324 taccaaaacactcaattttatttggagtatcaaagaaattgcc 366  Q
    ||||||||||||||||||| ||||||||| || ||||||||||    
T  37502736 taccaaaacactcaattttgtttggagtaccatagaaattgcc 37502694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 223 - 342
Target Start/End: Complemental strand, 32248360 - 32248241
Alignment:
Q  223 agaagtgtaccaaaactctttctcttaagttaatctttaataatgttgacatagatcatttaattgaaatgatattattctattggttaaacatttgaga 322  Q
    ||||||||||||||||||||||  |||| | ||||||||||||||||||||| |||| || ||||||||| | | | |||||||||||||||||||||||    
T  32248360 agaagtgtaccaaaactctttcctttaaatcaatctttaataatgttgacatggatctttgaattgaaataacacttttctattggttaaacatttgaga 32248261  T
Q  323 gtaccaaaacactcaatttt 342  Q
    ||||||||||||||||||||    
T  32248260 gtaccaaaacactcaatttt 32248241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 225 - 328
Target Start/End: Complemental strand, 47814834 - 47814731
Alignment:
Q  225 aagtgtaccaaaactctttctcttaagttaatctttaataatgttgacatagatcatttaattgaaatgatattattctattggttaaacatttgagagt 324  Q
    |||||||| ||||||||||| || |||| |||||||||||||||| |||| ||||||||||||||||||| | |||||||||||||||||||||||||||    
T  47814834 aagtgtacaaaaactctttccctcaagtcaatctttaataatgttaacatggatcatttaattgaaatgacactattctattggttaaacatttgagagt 47814735  T
Q  325 acca 328  Q
    ||||    
T  47814734 acca 47814731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 225 - 342
Target Start/End: Original strand, 33427277 - 33427390
Alignment:
Q  225 aagtgtaccaaaactctttctcttaagttaatctttaataatgttgacatagatcatttaattgaaatgatattattctattggttaaacatttgagagt 324  Q
    |||||||||||||||||||| || |||| |||| |||||||||||| ||| ||||||||||||||||||   ||||  ||||||||||| ||||||||||    
T  33427277 aagtgtaccaaaactctttccctcaagtcaatccttaataatgttggcattgatcatttaattgaaatg--gttat--tattggttaaatatttgagagt 33427372  T
Q  325 accaaaacactcaatttt 342  Q
    ||||||||||||||||||    
T  33427373 accaaaacactcaatttt 33427390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 142
Target Start/End: Complemental strand, 32248529 - 32248441
Alignment:
Q  55 agttttgtgttcccagaa-gaaaaagaggaggctacgtttcagatgatgaatgttggagagaaaattgtgatggtggttaatgatttgg 142  Q
    ||||||||||||| |||| ||||||||||| | || ||||||||||||||||| || |||||||||||| |||||||||||||||||||    
T  32248529 agttttgtgttcctagaaagaaaaagaggaagttaagtttcagatgatgaatgatgaagagaaaattgtaatggtggttaatgatttgg 32248441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 8655903 - 8655850
Alignment:
Q  258 tttaataatgttgacatagatcatttaattgaaatgatattattctattggtta 311  Q
    |||||||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  8655903 tttaataatgctgacatagatcatttaattgaaatggcattattctattggtta 8655850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 37502969 - 37502917
Alignment:
Q  90 gtttcagatgatgaatgttggagagaaaattgtgatggtggttaatgatttgg 142  Q
    |||| |||||||||| |||||||||||||||||||||| ||||||||||||||    
T  37502969 gtttgagatgatgaaggttggagagaaaattgtgatggcggttaatgatttgg 37502917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 37503025 - 37502975
Alignment:
Q  15 ttgttcaaagatgtttgagacaaaattggtacatatatgaagttttgtgtt 65  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||||||||    
T  37503025 ttgttcaaagatgtttgagatgaaattggtacatagatgaagttttgtgtt 37502975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 33427123 - 33427194
Alignment:
Q  71 aagaaaaagaggaggctacgtttcagatgatgaatgttggagagaaaattgtgatggtggttaatgatttgg 142  Q
    ||||||||||| ||  ||||||| ||| ||||||||||||||||||||||| ||||   |||||||||||||    
T  33427123 aagaaaaagagaagattacgtttgagaagatgaatgttggagagaaaattgcgatgaccgttaatgatttgg 33427194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 47814994 - 47814939
Alignment:
Q  71 aagaaaaagaggaggctacgtttcagatgatgaatgttggagagaaaattgtgatg 126  Q
    ||||||||||| ||| ||||||| ||| ||||||||||||||||||||||| ||||    
T  47814994 aagaaaaagagaaggttacgtttgagaagatgaatgttggagagaaaattgcgatg 47814939  T

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Target: chr2 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 225 - 367
Target Start/End: Complemental strand, 18747913 - 18747771
Alignment:
Q  225 aagtgtaccaaaactctttctcttaagttaatctttaataatgttgacatagatcatttaattgaaatgatattattctattggttaaacatttgagagt 324  Q
    ||||||||||||||| | |||||||||| ||| |||||||||| |||||| ||| ||||||||||||||| | | |||||||||||||||||||||||||    
T  18747913 aagtgtaccaaaactatctctcttaagtcaatatttaataatgctgacatggataatttaattgaaatgacacttttctattggttaaacatttgagagt 18747814  T
Q  325 accaaaacactcaattttatttggagtatcaaagaaattgcct 367  Q
    |||||||||||| ||||| |||||||||  | |||||||||||    
T  18747813 accaaaacactcgattttgtttggagtactatagaaattgcct 18747771  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 18749022 - 18748931
Alignment:
Q  15 ttgttcaaagatgtttgagacaaaattggtacatatatgaagttttgtgttcccagaa--gaaaaagaggaggctacgtttcagatgatgaa 104  Q
    ||||| ||||||||||||||  |||||||||||||  |||||| |||||||||| |||  |||||||| |||| ||| ||| ||||||||||    
T  18749022 ttgtttaaagatgtttgagatgaaattggtacataggtgaagtcttgtgttcccggaaaggaaaaagaagaggttacttttgagatgatgaa 18748931  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 4867503 - 4867406
Alignment:
Q  254 aatctttaataatgttgacatagatcatttaattgaaatgatattattctattggttaaacatttgagagtaccaaaacactcaattttatttggagta 352  Q
    ||||| |||||||| ||| || ||||||||||||||||| || || || | ||||| ||| ||| | ||||| | ||||||||||||||||||||||||    
T  4867503 aatctctaataatgctgatatggatcatttaattgaaat-atctttttttgttggtcaaatattagggagtatcgaaacactcaattttatttggagta 4867406  T

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Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 227 - 366
Target Start/End: Complemental strand, 34872218 - 34872079
Alignment:
Q  227 gtgtaccaaaactctttctcttaagttaatctttaataatgttgacatagatcatttaattgaaatgatattattctattggttaaacatttgagagtac 326  Q
    ||||||||||||| |||  ||||||| ||| |||||||||| |||||| |||| |||||||||||||| | | ||||||| ||||||||||||||||||     
T  34872218 gtgtaccaaaactattttccttaagtcaatttttaataatgctgacatcgatcgtttaattgaaatgacactcttctattagttaaacatttgagagtaa 34872119  T
Q  327 caaaacactcaattttatttggagtatcaaagaaattgcc 366  Q
    ||||||||||||||||  |||||||| || | ||||||||    
T  34872118 caaaacactcaattttggttggagtaccataaaaattgcc 34872079  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 55 - 141
Target Start/End: Complemental strand, 31371749 - 31371662
Alignment:
Q  55 agttttgtgttcccag-aagaaaaagaggaggctacgtttcagatgatgaatgttggagagaaaattgtgatggtggttaatgatttg 141  Q
    |||||||||||||||| |||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31371749 agttttgtgttcccagcaagaaaaaaaggaggttaccttacagatgatgaatgttggagagaaaattgtgatggtggttaatgatttg 31371662  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 254 - 366
Target Start/End: Complemental strand, 31371551 - 31371439
Alignment:
Q  254 aatctttaataatgttgacatagatcatttaattgaaatgatattattctattggttaaacatttgagagtaccaaaacactcaattttatttggagtat 353  Q
    |||||||||||||| | ||||  || ||||||||||||||| | | || ||||||||||| ||||||||||| ||||||||||||||||||||| ||||     
T  31371551 aatctttaataatgctaacatgaattatttaattgaaatgacacttttatattggttaaatatttgagagtatcaaaacactcaattttatttgaagtac 31371452  T
Q  354 caaagaaattgcc 366  Q
    || ||||||||||    
T  31371451 catagaaattgcc 31371439  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 34872348 - 34872304
Alignment:
Q  97 atgatgaatgttggagagaaaattgtgatggtggttaatgatttg 141  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  34872348 atgatgaatgttggagagaaaattgtgatggcggttaatgatttg 34872304  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 34872427 - 34872363
Alignment:
Q  1 tattaaaggaagccttgttcaaagatgtttgagacaaaattggtacatatatgaagttttgtgttccca 69  Q
    |||||||||||   |||||||||||||||||||||||||||| ||||     |||||||||||||||||    
T  34872427 tattaaaggaaattttgttcaaagatgtttgagacaaaattgatacaa----gaagttttgtgttccca 34872363  T

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